[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 85 items for (author: sokol & p)

EMDB-41986:
Human retinal variant phosphomimetic IMPDH1(595)-S477D free octamer bound by GTP, ATP, IMP, and NAD+
Method: single particle / : Calise SJ, Kollman JM

EMDB-41989:
Human retinal variant phosphomimetic IMPDH1(546)-S477D filament bound by GTP, ATP, IMP, and NAD+, octamer-centered
Method: single particle / : Calise SJ, Kollman JM

EMDB-42012:
Human retinal variant phosphomimetic IMPDH1(546)-S477D filament bound by GTP, ATP, IMP, and NAD+, interface-centered
Method: single particle / : Calise SJ, Kollman JM

EMDB-42026:
Human retinal variant phosphomimetic IMPDH1(546)-S477D filament bound by ATP, IMP, and NAD+, octamer-centered
Method: single particle / : Calise SJ, Kollman JM

EMDB-42029:
Human retinal variant phosphomimetic IMPDH1(546)-S477D filament bound by ATP, IMP, and NAD+, interface-centered
Method: single particle / : Calise SJ, Kollman JM

PDB-8u7m:
Human retinal variant phosphomimetic IMPDH1(595)-S477D free octamer bound by GTP, ATP, IMP, and NAD+
Method: single particle / : Calise SJ, Kollman JM

PDB-8u7q:
Human retinal variant phosphomimetic IMPDH1(546)-S477D filament bound by GTP, ATP, IMP, and NAD+, octamer-centered
Method: single particle / : Calise SJ, Kollman JM

PDB-8u7v:
Human retinal variant phosphomimetic IMPDH1(546)-S477D filament bound by GTP, ATP, IMP, and NAD+, interface-centered
Method: single particle / : Calise SJ, Kollman JM

PDB-8u8o:
Human retinal variant phosphomimetic IMPDH1(546)-S477D filament bound by ATP, IMP, and NAD+, octamer-centered
Method: single particle / : Calise SJ, Kollman JM

PDB-8u8y:
Human retinal variant phosphomimetic IMPDH1(546)-S477D filament bound by ATP, IMP, and NAD+, interface-centered
Method: single particle / : Calise SJ, Kollman JM

EMDB-34920:
Capsid of DT57C bacteriophage in the full state
Method: single particle / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-34949:
Capsid of DT57C bacteriophage in the empty state
Method: single particle / : Ayala R, Moiseenko AV, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-34952:
Neck of DT57C bacteriophage in the full state
Method: single particle / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-34955:
Baseplate of DT57C bacteriophage in the full state
Method: single particle / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-34968:
Straight fiber of DT57C bacteriophage in the full state
Method: single particle / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-34972:
Tail tube of DT57C bacteriophage in the full state
Method: helical / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-34973:
Curved tail segment of the DT57C bacteriophage in the full state
Method: single particle / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-35003:
Focused refinement of the TTrP region of the neck of the DT57C bacteriophage in the full state
Method: single particle / : Ayala R, Moiseenko AV, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-35006:
Map of the neck of the DT57C bacteriophage in the full state with C12 symmetry
Method: single particle / : Ayala R, Moiseenko AV, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-35099:
Consensus refinement for the baseplate of DT57C bacteriophage
Method: single particle / : Ayala R, Moiseenko AV, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-35100:
Focused refinement of the baseplate of DT57C focused around its core region
Method: single particle / : Ayala R, Moiseenko AV, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-35101:
Focused refinement of the baseplate of DT57C focused around the baseplate hub protein
Method: single particle / : Ayala R, Moiseenko AV, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-37449:
Focused map for the TMP N-terminus of DT57C
Method: single particle / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-37518:
Tomogram of DT57C bacteriophage (1 of 9)
Method: electron tomography / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-37519:
Tomogram of DT57C bacteriophage (2 out of 9)
Method: electron tomography / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-37521:
Tomogram of DT57C bacteriophage (3 out of 9)
Method: electron tomography / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-37531:
Tomogram of DT57C bacteriophage (4 out of 9)
Method: electron tomography / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-37534:
Tomogram of DT57C bacteriophage (5 out of 9)
Method: electron tomography / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-37536:
Tomogram of DT57C bacteriophage (6 out of 9)
Method: electron tomography / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-37539:
Tomogram of DT57C bacteriophage (7 out of 9)
Method: electron tomography / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-37543:
Tomogram of DT57C bacteriophage (8 out of 9)
Method: electron tomography / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-37544:
Tomogram of DT57C bacteriophage (9 out of 9)
Method: electron tomography / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

PDB-8ho3:
Capsid of DT57C bacteriophage in the full state
Method: single particle / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

PDB-8hqk:
Capsid of DT57C bacteriophage in the empty state
Method: single particle / : Ayala R, Moiseenko AV, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

PDB-8hqo:
Neck of DT57C bacteriophage in the full state
Method: single particle / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

PDB-8hqz:
Baseplate of DT57C bacteriophage in the full state
Method: single particle / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

PDB-8hre:
Straight fiber of DT57C bacteriophage in the full state
Method: single particle / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

PDB-8hrg:
Tail tube of DT57C bacteriophage in the full state
Method: helical / : Ayala R, Moiseenko AV, Chen TH, Kulikov EE, Golomidova AK, Orekhov PS, Street MA, Sokolova OS, Letarov AV, Wolf M

EMDB-27221:
Cryo-EM map of human LIF signaling complex with full extracellular domains
Method: single particle / : Zhou Y, Franklin MC

EMDB-27227:
Cryo-EM map of human CNTF signaling complex with full extracellular domains: refined from selected full particle dataset, with better resolution in the interaction core region
Method: single particle / : Zhou Y, Franklin MC

EMDB-27228:
Cryo-EM structure of human CNTFR alpha in complex with the Fab fragments of two antibodies
Method: single particle / : Zhou Y, Franklin MC

EMDB-27229:
Cryo-EM map of human CNTF signaling complex with full extracellular domains: refined from a particle subset, with lower global resolution but improved LIFR D6-D8 density
Method: single particle / : Zhou Y, Franklin MC

EMDB-27230:
Cryo-EM structure of human CLCF1 in complex with CRLF1 and CNTFR alpha
Method: single particle / : Zhou Y, Franklin MC

EMDB-27231:
Cryo-EM map of human CLCF1 signaling complex with full extracellular domains
Method: single particle / : Zhou Y, Franklin MC

EMDB-27244:
Cryo-EM map of detergent-solubilized human IL-6 signaling complex with full extracellular domains
Method: single particle / : Zhou Y, Franklin MC

EMDB-27246:
Cryo-EM map of human IL-27 signaling complex with full extracellular domains
Method: single particle / : Zhou Y, Franklin MC

EMDB-27247:
Cryo-EM map of human IL-27 signaling complex: focused refinement on the interaction core region
Method: single particle / : Zhou Y, Franklin MC

PDB-8d6a:
Cryo-EM structure of human LIF signaling complex: model containing the interaction core region
Method: single particle / : Zhou Y, Franklin MC

PDB-8d74:
Cryo-EM structure of human CNTF signaling complex: model containing the interaction core region
Method: single particle / : Zhou Y, Franklin MC

PDB-8d7e:
Cryo-EM structure of human CNTFR alpha in complex with the Fab fragments of two antibodies
Method: single particle / : Zhou Y, Franklin MC

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more