[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 28 items for (author: slotboom & dj)

EMDB-16120:
Cryo-EM structure of the folate-specific ECF transporter complex in MSP2N2 lipid nanodiscs bound to ATP and ADP
Method: single particle / : Thangaratnarajah C, Rheinberger J, Paulino C, Slotboom DJ

EMDB-16121:
Cryo-EM structure of the folate-specific ECF transporter complex in MSP2N2 lipid nanodiscs bound to AMP-PNP
Method: single particle / : Thangaratnarajah C, Rheinberger J, Paulino C, Slotboom DJ

EMDB-16122:
Cryo-EM structure of the wild-type solitary ECF module in MSP2N2 lipid nanodiscs in the ATPase open and nucleotide-free conformation
Method: single particle / : Thangaratnarajah C, Rheinberger J, Paulino C, Slotboom DJ

EMDB-16123:
Cryo-EM structure of the wild-type solitary ECF module in DDM micelles in the ATPase open and nucleotide-free conformation
Method: single particle / : Thangaratnarajah C, Rheinberger J, Paulino C, Slotboom DJ

EMDB-16124:
Cryo-EM structure of the mutant solitary ECF module 2EQ in MSP2N2 lipid nanodiscs in the ATPase closed and ATP-bound conformation
Method: single particle / : Thangaratnarajah C, Rheinberger J, Paulino C, Slotboom DJ

EMDB-15393:
Cryo-EM structure of a substrate-bound glutamate transporter homologue GltTk encapsulated within a nanodisc
Method: single particle / : Whittaker JJ, Guskov A

EMDB-12142:
ASCT2 in the presence of the inhibitor Lc-BPE in the outward-open conformation.
Method: single particle / : Garibsingh RA, Ndaru E, Garaeva AA, Shi Y, Zielewicz L, Bonomi M, Slotboom DJ, Paulino C, Grewer C, Schlessinger A

EMDB-12143:
ASCT2 in the presence of the inhibitor ERA-21 in the outward-open conformation.
Method: single particle / : Garibsingh RA, Ndaru E, Garaeva AA, Shi Y, Zielewicz L, Bonomi M, Slotboom DJ, Paulino C, Grewer C, Schlessinger A

EMDB-12314:
Structure of glutamate transporter homologue in complex with Sybody
Method: single particle / : Arkhipova V, Slotboom DJ, Guskov A

EMDB-12483:
Cryo-EM structure of the folate-specific ECF transporter complex in DDM micelles
Method: single particle / : Thangaratnarajah C, Rheinberger J, Paulino C, Slotboom DJ

EMDB-12484:
Cryo-EM structure of the folate-specific ECF transporter complex in MSP2N2 lipid nanodiscs
Method: single particle / : Thangaratnarajah C, Rheinberger J, Paulino C, Slotboom DJ

EMDB-12082:
Cryo-EM map of the SARS-CoV-2 spike protein in complex with sybody#15 and sybody#68 in a 3up conformation.
Method: single particle / : Walter JD, Hutter CAJ, Garaeva AA, Scherer M, Zimmermann I, Wyss M, Rheinberger J, Ruedin Y, Earp JC, Egloff P, Sorgenfrei M, Huerlimann LM, Gonda I, Meier G, Remm S, Thavarasah S, Zimmer G, Slotboom DJ, Paulino C, Plattet P, Seeger MA

EMDB-12083:
Cryo-EM map of the SARS-CoV-2 spike protein in complex with sybody#15 and sybody#68 in a 1up/1up-out/1down conformation.
Method: single particle / : Walter JD, Hutter CAJ, Garaeva AA, Scherer M, Zimmermann I, Wyss M, Rheinberger J, Ruedin Y, Earp JC, Egloff P, Sorgenfrei M, Huerlimann LM, Gonda I, Meier G, Remm S, Thavarasah S, Zimmer G, Slotboom DJ, Paulino C, Plattet P, Seeger MA

EMDB-12084:
Cryo-EM map of the SARS-CoV-2 spike protein in complex with sybody#15 in a 1up/1up-out/1down conformation.
Method: single particle / : Walter JD, Hutter CAJ, Garaeva AA, Scherer M, Zimmermann I, Wyss M, Rheinberger J, Ruedin Y, Earp JC, Egloff P, Sorgenfrei M, Huerlimann LM, Gonda I, Meier G, Remm S, Thavarasah S, Zimmer G, Slotboom DJ, Paulino C, Plattet P, Seeger MA

EMDB-12085:
Cryo-EM map of the SARS-CoV-2 spike protein in complex with sybody#68 in a 2up/1flexible conformation.
Method: single particle / : Walter JD, Hutter CAJ, Garaeva AA, Scherer M, Zimmermann I, Wyss M, Rheinberger J, Ruedin Y, Earp JC, Egloff P, Sorgenfrei M, Huerlimann LM, Gonda I, Meier G, Remm S, Thavarasah S, Zimmer G, Slotboom DJ, Paulino C, Plattet P, Seeger MA

EMDB-12086:
Cryo-EM map of the SARS-CoV-2 spike protein in complex with sybody#68 in a 1up/2down conformation.
Method: single particle / : Walter JD, Hutter CAJ, Garaeva AA, Scherer M, Zimmermann I, Wyss M, Rheinberger J, Ruedin Y, Earp JC, Egloff P, Sorgenfrei M, Huerlimann LM, Gonda I, Meier G, Remm S, Thavarasah S, Zimmer G, Slotboom DJ, Paulino C, Plattet P, Seeger MA

EMDB-10549:
The structure of ABC transporter Rv1819c without addition of substrate
Method: single particle / : Rempel S, Gati C

EMDB-10550:
The structure of ABC transporter Rv1819c in AMP-PNP bound state
Method: single particle / : Rempel S, Gati C

EMDB-10632:
Structure of glutamate transporter homologue GltTk in the presence of TBOA inhibitor
Method: single particle / : Arkhipova V, Slotboom DJ

EMDB-10633:
Structure of glutamate transporter homologue GltTk in the unsaturated conditions - inward-inward-outward configuration
Method: single particle / : Arkhipova V, Slotboom DJ

EMDB-10634:
Structure of glutamate transporter homologue GltTk in unsaturated conditions - outward-outward-inward configuration
Method: single particle / : Arkhipova V, Slotboom DJ

EMDB-10635:
Structure of glutamate transporter homologue GltTk in the saturated conditions
Method: single particle / : Arkhipova V, Slotboom DJ

EMDB-10636:
Structure of glutamate transporter homologue GltTk in sodium only condition
Method: single particle / : Arkhipova V, Slotboom DJ

EMDB-10016:
Inward-open structure of the ASCT2 (SLC1A5) mutant C467R in presence of TBOA
Method: single particle / : Garaeva AA, Guskov A

EMDB-10017:
Inward-open structure of the ASCT2 (SLC1A5) in absence of substrate
Method: single particle / : Garaeva AA, Guskov A, Slotboom DJ, Paulino C

EMDB-10018:
Inward-open structure of the ASCT2 (SLC1A5) mutant C467R in absence of substrate
Method: single particle / : Garaeva AA, Guskov A

EMDB-4386:
cryo-EM structure of the human neutral amino acid transporter ASCT2
Method: single particle / : Garaeva AA, Oostergetel GT

EMDB-3605:
The full-length structure of ZntB
Method: single particle / : Cornelius G, Stetsenko A, Scheres SHW, Slotboom DJ, Guskov A

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more