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Showing 1 - 50 of 427 items for (author: shima & s)

EMDB-16776:
Human arginylated beta-actin
Method: single particle / : Pinto CS, Bakker SE, Suchenko A, Hussain H, Hatano T, Sampath K, Chinthalapudi K, Mishima M, Balasubramanian M

PDB-8cog:
Human arginylated beta-actin
Method: single particle / : Pinto CS, Bakker SE, Suchenko A, Hussain H, Hatano T, Sampath K, Chinthalapudi K, Mishima M, Balasubramanian M

EMDB-38291:
Cryo-EM structure of human XKR8-basigin complex in lipid nanodisc
Method: single particle / : Sakuragi TS, Kanai RK, Kikkawa MK, Toyoshima CT, Nagata SN

PDB-8xej:
Cryo-EM structure of human XKR8-basigin complex in lipid nanodisc
Method: single particle / : Sakuragi TS, Kanai RK, Kikkawa MK, Toyoshima CT, Nagata SN

EMDB-37480:
PSI-LHCI of the red alga Cyanidium caldarium RK-1 (NIES-2137)
Method: single particle / : Kato K, Hamaguchi T, Nakajima Y, Kawakami K, Yonekura K, Shen JR, Nagao R

PDB-8wey:
PSI-LHCI of the red alga Cyanidium caldarium RK-1 (NIES-2137)
Method: single particle / : Kato K, Hamaguchi T, Nakajima Y, Kawakami K, Yonekura K, Shen JR, Nagao R

EMDB-35448:
Overlapping tri-nucleosome
Method: single particle / : Nishimura M, Fujii T, Tanaka H, Maehara K, Nozawa K, Takizawa Y, Ohkawa Y, Kurumizaka H

PDB-8ihl:
Overlapping tri-nucleosome
Method: single particle / : Nishimura M, Fujii T, Tanaka H, Maehara K, Nozawa K, Takizawa Y, Ohkawa Y, Kurumizaka H

EMDB-36724:
Structure of the SARS-CoV-2 XBB.1.5 spike glycoprotein (closed state 1)
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Sasaki J, Sasaki-Tabata K, Maenaka K, Hashiguchi T

EMDB-36726:
Structure of the SARS-CoV-2 XBB.1.5 spike glycoprotein (closed state 2)
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Sasaki J, Sasaki-Tabata K, Maenaka K, Hashiguchi T

EMDB-36727:
Structure of SARS-CoV-2 XBB.1.5 spike glycoprotein in complex with ACE2 (1-up state)
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Sasaki J, Sasaki-Tabata K, Maenaka K, Hashiguchi T

EMDB-36728:
Structure of SARS-CoV-2 XBB.1.5 spike glycoprotein in complex with ACE2 (2-up state)
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Sasaki J, Sasaki-Tabata K, Maenaka K, Hashiguchi T

EMDB-36729:
Structure of SARS-CoV-2 XBB.1.5 spike RBD in complex with ACE2
Method: single particle / : Yajima H, Anraku Y, Kita S, Kimura K, Sasaki J, Sasaki-Tabata K, Maenaka K, Hashiguchi T

EMDB-36178:
Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Suzuki T

EMDB-36179:
Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Suzuki T

EMDB-36180:
Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Suzuki T

EMDB-36181:
Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Suzuki T

PDB-8jdj:
Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Suzuki T

PDB-8jdk:
Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Suzuki T

PDB-8jdl:
Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Suzuki T

PDB-8jdm:
Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Suzuki T

EMDB-36251:
RNA polymerase II elongation complex bound with Elf1, Spt4/5 and foreign DNA, stalled at SHL(-1) of the nucleosome
Method: single particle / : Akatsu M, Fujita R, Ogasawara M, Ehara H, Kujirai T, Takizawa Y, Sekine S, Kurumizaka H

EMDB-36252:
RNA polymerase II elongation complex containing 40 bp upstream DNA loop, stalled at SHL(-1) of the nucleosome
Method: single particle / : Akatsu M, Fujita R, Ogasawara M, Ehara H, Kujirai T, Takizawa Y, Sekine S, Kurumizaka H

EMDB-36253:
RNA polymerase II elongation complex containing 60 bp upstream DNA loop, stalled at SHL(-1) of the nucleosome
Method: single particle / : Akatsu M, Fujita R, Ogasawara M, Ehara H, Kujirai T, Takizawa Y, Sekine S, Kurumizaka H

EMDB-37848:
RNA polymerase II elongation complex bound with Elf1, Spt4/5 and foreign DNA, stalled at SHL(0) of the nucleosome
Method: single particle / : Akatsu M, Fujita R, Ogasawara M, Ehara H, Kujirai T, Takizawa Y, Sekine S, Kurumizaka H

PDB-8jh2:
RNA polymerase II elongation complex bound with Elf1, Spt4/5 and foreign DNA, stalled at SHL(-1) of the nucleosome
Method: single particle / : Akatsu M, Fujita R, Ogasawara M, Ehara H, Kujirai T, Takizawa Y, Sekine S, Kurumizaka H

PDB-8jh3:
RNA polymerase II elongation complex containing 40 bp upstream DNA loop, stalled at SHL(-1) of the nucleosome
Method: single particle / : Akatsu M, Fujita R, Ogasawara M, Ehara H, Kujirai T, Takizawa Y, Sekine S, Kurumizaka H

PDB-8jh4:
RNA polymerase II elongation complex containing 60 bp upstream DNA loop, stalled at SHL(-1) of the nucleosome
Method: single particle / : Akatsu M, Fujita R, Ogasawara M, Ehara H, Kujirai T, Takizawa Y, Sekine S, Kurumizaka H

EMDB-40969:
Uncrosslinked nNOS-CaM oxygenase homodimer
Method: single particle / : Lee K, Pospiech TH, Southworth D

EMDB-40970:
DSBU crosslinked nNOS-CaM oxygenase homodimer
Method: single particle / : Lee K, Pospiech TH, Southworth D

PDB-8t1j:
Uncrosslinked nNOS-CaM oxygenase homodimer
Method: single particle / : Lee K, Pospiech TH, Southworth D

PDB-8t1k:
DSBU crosslinked nNOS-CaM oxygenase homodimer
Method: single particle / : Lee K, Pospiech TH, Southworth D

EMDB-33660:
Structure of the Bacterial Ribosome with human tRNA Asp(G34) and mRNA(GAU)
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Suzuki T

EMDB-33661:
Structure of the Bacterial Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Suzuki T

EMDB-33662:
Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Suzuki T

EMDB-33663:
Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAC)
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Suzuki T

EMDB-33664:
Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU)
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Suzuki T

EMDB-33665:
Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAC)
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Suzuki T

PDB-7y7c:
Structure of the Bacterial Ribosome with human tRNA Asp(G34) and mRNA(GAU)
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Suzuki T

PDB-7y7d:
Structure of the Bacterial Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Suzuki T

PDB-7y7e:
Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Suzuki T

PDB-7y7f:
Structure of the Bacterial Ribosome with human tRNA Asp(ManQ34) and mRNA(GAC)
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Suzuki T

PDB-7y7g:
Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU)
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Suzuki T

PDB-7y7h:
Structure of the Bacterial Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAC)
Method: single particle / : Ishiguro K, Yokoyama T, Shirouzu M, Suzuki T

EMDB-34742:
SARS-CoV-2 spike in complex with neutralizing antibody NIV-11 focused on RBD and NIV-11 interface
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y

PDB-8hgl:
SARS-CoV-2 spike in complex with neutralizing antibody NIV-11
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y

PDB-8hgm:
Structure of SARS-CoV-2 spike RBD in complex with neutralizing antibody NIV-11
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y

EMDB-37070:
Cryo-EM structure of the human nucleosome containing H3.8
Method: single particle / : Hirai H, Kujirai T, Takizawa Y, Kurumizaka H

PDB-8kb5:
Cryo-EM structure of the human nucleosome containing H3.8
Method: single particle / : Hirai H, Kujirai T, Takizawa Y, Kurumizaka H

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Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
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Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

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Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

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