[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 6,628 items for (author: shi & l)

EMDB-18214:
Structure of CUL9-RBX1 ubiquitin E3 ligase complex - hexameric assembly
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

EMDB-18216:
Structure of CUL9-RBX1 ubiquitin E3 ligase complex in unneddylated and neddylated conformation - focused cullin dimer
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

EMDB-18217:
Structure of CUL9-RBX1 ubiquitin E3 ligase complex in unneddylated and neddylated conformation - focused on E2-like density
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

EMDB-18218:
Structure of CUL9-RBX1 ubiquitin E3 ligase complex in unneddylated and neddylated conformation - focused dimeric core
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

EMDB-18220:
Structure of the hexameric CUL9-RBX1 complex with deletion of CUL9 CPH domain
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

EMDB-18221:
Structure of the hexameric CUL9-RBX1 complex with deletion of CUL9 DOC domain
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

EMDB-18222:
Structure of the hexameric CUL9-RBX1 complex with deletion of CUL9 ARM9 domain
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

EMDB-18223:
Structure of the hexameric CUL9-RBX1 complex with deletion of CUL9 ARIH-RBR element
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

EMDB-19179:
Structure of CUL9-RBX1 ubiquitin E3 ligase complex in unneddylated conformation - symmetry expanded unneddylated dimer
Method: single particle / : Hopf LVM, Horn-Ghetko D, Prabu JR, Schulman BA

PDB-8q7e:
Structure of CUL9-RBX1 ubiquitin E3 ligase complex - hexameric assembly
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

PDB-8q7h:
Structure of CUL9-RBX1 ubiquitin E3 ligase complex in unneddylated and neddylated conformation - focused cullin dimer
Method: single particle / : Hopf LVM, Horn-Ghetko D, Schulman BA

PDB-8rhz:
Structure of CUL9-RBX1 ubiquitin E3 ligase complex in unneddylated conformation - symmetry expanded unneddylated dimer
Method: single particle / : Hopf LVM, Horn-Ghetko D, Prabu JR, Schulman BA

EMDB-37320:
CryoEM structure of NaDC1 with Citrate
Method: single particle / : Chi X, Chen Y, Li Y, Dai L, Zhang Y, Shen Y, Shi T, Yang H, Wang Z, Yan R

EMDB-37321:
CryoEM structure of NaDC1 in apo state
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Wang Z, Yan R

EMDB-37322:
NaDC1 with inhibitor ACA
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Wang Z, Yan R

EMDB-37323:
NaS1 with sulfate - IN/IN state
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Wang Z, Yan R

EMDB-37329:
NaS1 with sulfate in IN/OUT state
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Wang Z, Yan R

EMDB-37330:
NaS1 in IN/IN state
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Wang Z, Yan R

EMDB-37332:
NaS1 in IN/OUT state
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Wang Z, Yan R

PDB-8w6c:
CryoEM structure of NaDC1 with Citrate
Method: single particle / : Chi X, Chen Y, Li Y, Dai L, Zhang Y, Shen Y, Chen Y, Shi T, Yang H, Wang Z, Yan R

PDB-8w6d:
CryoEM structure of NaDC1 in apo state
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Chen Y, Wang Z, Yan R

PDB-8w6g:
NaDC1 with inhibitor ACA
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Chen Y, Wang Z, Yan R

PDB-8w6h:
NaS1 with sulfate - IN/IN state
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Chen Y, Wang Z, Yan R

PDB-8w6n:
NaS1 with sulfate in IN/OUT state
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Chen Y, Wang Z, Yan R

PDB-8w6o:
NaS1 in IN/IN state
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Chen Y, Wang Z, Yan R

PDB-8w6t:
NaS1 in IN/OUT state
Method: single particle / : Chi X, Chen Y, Li Y, Zhang Y, Shen Y, Chen Y, Wang Z, Yan R

EMDB-38999:
Focused refinement map of BRR2 region of the human minor pre-B complex
Method: single particle / : Bai R, Yuan M, Zhang P, Luo T, Shi Y, Wan R

EMDB-37529:
Structure of DDM1-nucleosome complex in the apo state
Method: single particle / : Liu Y, Zhang Z, Du J

EMDB-37533:
Structure of DDM1-nucleosome complex in ADP state
Method: single particle / : Liu Y, Zhang Z, Du J

EMDB-37535:
Structure of DDM1-nucleosome complex in ADP-BeFx state
Method: single particle / : Liu Y, Zhang Z, Du J

EMDB-37537:
Structure of DDM1-nucleosome complex in the ADP-BeFx state with DDM1 bound to SHL2 and SHL-2
Method: single particle / : Liu Y, Zhang Z, Du J

EMDB-37538:
Structure of nucleosome core particle of Arabidopsis thaliana
Method: single particle / : Liu Y, Zhang Z, Du J

PDB-8wh5:
Structure of DDM1-nucleosome complex in the apo state
Method: single particle / : Liu Y, Zhang Z, Du J

PDB-8wh8:
Structure of DDM1-nucleosome complex in ADP state
Method: single particle / : Liu Y, Zhang Z, Du J

PDB-8wh9:
Structure of DDM1-nucleosome complex in ADP-BeFx state
Method: single particle / : Liu Y, Zhang Z, Du J

PDB-8wha:
Structure of DDM1-nucleosome complex in the ADP-BeFx state with DDM1 bound to SHL2 and SHL-2
Method: single particle / : Liu Y, Zhang Z, Du J

PDB-8whb:
Structure of nucleosome core particle of Arabidopsis thaliana
Method: single particle / : Liu Y, Zhang Z, Du J

EMDB-17835:
Consensus cryo-EM structure of Dynein-Dynactin-JIP3(1-185)-LIS1
Method: single particle / : Singh K, Lau CK, Manigrasso G, Gassmann R, Carter AP

EMDB-17836:
Consensus cryo-EM structure of Dynein-dynactin-JIP3(1-560)-LIS1
Method: single particle / : Singh K, Lau CK, Manigrasso G, Gassmann R, Carter AP

EMDB-38994:
Structure of the auto-inhibited Dark monomer
Method: single particle / : Tian L, Li Y, Shi Y

PDB-8y6p:
Structure of the auto-inhibited Dark monomer
Method: single particle / : Tian L, Li Y, Shi Y

EMDB-37104:
96-nm axonemal repeat with RS1/2/3
Method: subtomogram averaging / : Cong X, Yao C

EMDB-37111:
48-nm repeat DMT
Method: subtomogram averaging / : Cong X, Yao C

EMDB-37114:
Radial Spoke 1 (RS1)
Method: subtomogram averaging / : Cong X, Yao C

EMDB-37116:
RS1 refined with head mask
Method: subtomogram averaging / : Cong X, Yao C

EMDB-37117:
Radial Spoke 2 (RS2)
Method: subtomogram averaging / : Cong X, Yao C

EMDB-37118:
Radial Spoke 2 (RS2) head
Method: subtomogram averaging / : Cong X, Yao C

EMDB-37119:
Radial Spoke 3
Method: subtomogram averaging / : Cong X, Yao C

EMDB-37120:
Radial Spoke 3 head
Method: subtomogram averaging / : Cong X, Yao C

EMDB-43647:
CryoEM structure of Gi-coupled TAS2R14 with cholesterol and an intracellular tastant
Method: single particle / : Kim Y, Gumpper RH, Roth BL

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more