[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 64 items for (author: schmid & sl)

EMDB-29530:
SARS-CoV-2 XBB.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-29531:
SARS-CoV-2 BQ.1.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-40240:
SARS-CoV-2 BN.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8fxb:
SARS-CoV-2 XBB.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8fxc:
SARS-CoV-2 BQ.1.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8s9g:
SARS-CoV-2 BN.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-29207:
CryoET tomogram of mitochondria in BACHD mouse model neuron
Method: electron tomography / : Wu GH, Galaz-Montoya JG, Gu Y, Mitchell PG, Wu C, Chiu W

EMDB-29208:
CryoET tomogram of BACHD mouse model neuron showing sheet aggregates
Method: electron tomography / : Wu GH, Galaz-Montoya JG, Gu Y, Mitchell PG, Wu C, Chiu W

EMDB-29210:
CryoET tomogram of purified mitochondria from HD patient iPSC-derived neuron (Q109)
Method: electron tomography / : Wu GH, Smith-Geater C, Galaz-Montoya JG, Mitchell PG, Thompson LM, Chiu W

EMDB-29211:
CryoET tomogram of HD patient iPSC-derived neuron (Q66) with PIAS1 hetKO treatment
Method: electron tomography / : Wu GH, Smith-Geater C, Galaz-Montoya JG, Mitchell PG, Thompson LM, Chiu W

EMDB-28668:
CryoET tomogram of iPSC-derived control non-HD neuron (Q18)
Method: electron tomography / : Wu GH, Smith-Geater C, Galaz-Montoya JG, Mitchell PG, Thompson LM, Chiu W

EMDB-28944:
CryoET tomogram of iPSC-derived control non-HD neuron (Q20)
Method: electron tomography / : Wu GH, Smith-Geater C, Galaz-Montoya JG, Mitchell PG, Thompson LM, Chiu W

EMDB-28946:
CryoET tomogram of HD patient iPSC-derived neuron (Q53)
Method: electron tomography / : Wu GH, Smith-Geater C, Galaz-Montoya JG, Mitchell PG, Thompson LM, Chiu W

EMDB-29074:
CryoET tomogram of HD patient iPSC-derived neuron (Q66)
Method: electron tomography / : Wu GH, Smith-Geater C, Galaz-Montoya JG, Mitchell PG, Thompson LM, Chiu W

EMDB-29075:
CryoET tomogram of HD patient iPSC-derived neuron (Q77)
Method: electron tomography / : Wu GH, Smith-Geater C, Galaz-Montoya JG, Mitchell PG, Thompson LM, Chiu W

EMDB-29076:
CryoET tomogram of HD patient iPSC-derived neuron (Q109)
Method: electron tomography / : Wu GH, Smith-Geater C, Galaz-Montoya JG, Mitchell PG, Thompson LM, Chiu W

EMDB-29079:
CryoET tomogram of HD patient iPSC-derived neuron (Q66) showing sheet aggregate
Method: electron tomography / : Wu GH, Smith-Geater C, Galaz-Montoya JG, Mitchell PG, Thompson LM, Chiu W

EMDB-29080:
CryoET tomogram of HD patient iPSC-derived neuron (Q66) with PIAS1 hetKO treatment
Method: electron tomography / : Wu GH, Smith-Geater C, Galaz-Montoya JG, Mitchell PG, Thompson LM, Chiu W

EMDB-29081:
CryoET tomogram of HD patient iPSC-derived neuron (Q66) with GRSF1 KD treatment
Method: electron tomography / : Wu GH, Smith-Geater C, Galaz-Montoya JG, Mitchell PG, Thompson LM, Chiu W

EMDB-29083:
CryoET tomogram of mitochondria in WT mouse neuron
Method: electron tomography / : Wu GH, Galaz-Montoya JG, Gu Y, Mitchell PG, Wu C, Chiu W

EMDB-29084:
CryoET tomogram of mitochondria in BACHD-dN17 mouse model neuron
Method: electron tomography / : Wu GH, Galaz-Montoya JG, Gu Y, Mitchell PG, Wu C, Chiu W

EMDB-28558:
SARS-CoV-2 BA.1 spike ectodomain trimer in complex with the S2X324 neutralizing antibody Fab fragment (local refinement of the RBD and S2X324)
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-28559:
SARS-CoV-2 Omicron BA.1 spike ectodomain trimer in complex with the S2X324 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8erq:
SARS-CoV-2 BA.1 spike ectodomain trimer in complex with the S2X324 neutralizing antibody Fab fragment (local refinement of the RBD and S2X324)
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8err:
SARS-CoV-2 Omicron BA.1 spike ectodomain trimer in complex with the S2X324 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-24894:
Ab16 Fab in complex with SARS-CoV-2 Spike (6P)
Method: single particle / : Windsor IW, Hauser BM, Schmidt AG

EMDB-24895:
Ab20 in complex with SARS-CoV-2 spike (6P)
Method: single particle / : Windsor IW, Hauser BM, Schmidt AG

EMDB-24347:
SARS-CoV-2 S glycoprotein in complex with S2X259 Fab
Method: single particle / : Veesler D, Tortorici MA, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-24365:
SARS-CoV-2 S bound to S2X259 Fab (local refinement of the RBD/S2X259 variable domains)
Method: single particle / : Veesler D, Tortorici MA, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-7ra8:
SARS-CoV-2 S glycoprotein in complex with S2X259 Fab
Method: single particle / : Veesler D, Tortorici MA, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-7ral:
SARS-CoV-2 S bound to S2X259 Fab (local refinement of the RBD/S2X259 variable domains)
Method: single particle / : Veesler D, Tortorici MA, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-23914:
Cryo-EM structure of SARS-CoV-2 spike in complex with neutralizing antibody B1-182.1 that targets the receptor-binding domain
Method: single particle / : Zhou T, Tsybovsky T, Kwong PD

EMDB-23915:
Cryo-EM structure of SARS-CoV-2 spike in complex with neutralizing antibody B1-182.1 that targets the receptor-binding domain
Method: single particle / : Zhou T, Tsybovsky T, Kwong PD

PDB-7mlz:
Cryo-EM structure of SARS-CoV-2 spike in complex with neutralizing antibody B1-182.1 that targets the receptor-binding domain
Method: single particle / : Zhou T, Tsybovsky T, Kwong PD

PDB-7mm0:
Cryo-EM structure of SARS-CoV-2 spike in complex with neutralizing antibody B1-182.1 that targets the receptor-binding domain
Method: single particle / : Zhou T, Tsybovsky T, Kwong PD

EMDB-23498:
Cryo-EM structure of SARS-CoV-2 spike in complex with neutralizing antibody A23-58.1 that targets the receptor-binding domain
Method: single particle / : Zhou T, Tsybovsky Y

EMDB-23499:
Cryo-EM structure of SARS-CoV-2 spike in complex with neutralizing antibody A23-58.1 that targets the receptor-binding domain
Method: single particle / : Zhou T, Tsybovsky T

PDB-7lrs:
Cryo-EM structure of SARS-CoV-2 spike in complex with neutralizing antibody A23-58.1 that targets the receptor-binding domain
Method: single particle / : Zhou T, Tsybovsky Y

PDB-7lrt:
Cryo-EM structure of SARS-CoV-2 spike in complex with neutralizing antibody A23-58.1 that targets the receptor-binding domain
Method: single particle / : Zhou T, Tsybovsky T

EMDB-24279:
Cryo-EM map of SARS-CoV-2 HexaPro Spike in complex with Ab090 Fab
Method: single particle / : Altomare CG, Feldman J, Schmidt AG, Bajic G

EMDB-24077:
CryoEM structure of neutralizing nanobody Nb30 in complex with SARS-CoV2 spike
Method: single particle / : Xu K, Kwong PD

EMDB-24078:
CryoEM structure of neutralizing nanobody Nb12 in complex with SARS-CoV2 spike
Method: single particle / : Xu K, Kwong PD

PDB-7my2:
CryoEM structure of neutralizing nanobody Nb30 in complex with SARS-CoV2 spike
Method: single particle / : Xu K, Kwong PD

PDB-7my3:
CryoEM structure of neutralizing nanobody Nb12 in complex with SARS-CoV2 spike
Method: single particle / : Xu K, Kwong PD

EMDB-22659:
SARS-CoV-2 spike in complex with the S2M11 neutralizing antibody Fab fragment
Method: single particle / : Tortorici MA, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-22660:
SARS-CoV-2 spike in complex with the S2E12 neutralizing antibody Fab fragment (local refinement of the RBD and Fab variable domains)
Method: single particle / : Tortorici MA, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

EMDB-22668:
SARS-CoV-2 spike in complex with the S2E12 neutralizing antibody Fab fragment
Method: single particle / : Tortorici M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-7k43:
SARS-CoV-2 spike in complex with the S2M11 neutralizing antibody Fab fragment
Method: single particle / : Tortorici MA, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-7k45:
SARS-CoV-2 spike in complex with the S2E12 neutralizing antibody Fab fragment (local refinement of the RBD and Fab variable domains)
Method: single particle / : Tortorici MA, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

PDB-7k4n:
SARS-CoV-2 spike in complex with the S2E12 neutralizing antibody Fab fragment
Method: single particle / : Tortorici M, Veesler D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more