[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 148 items for (author: schafer & t)

EMDB-18329:
yeast cytoplasmic exosome-Ski2 complex degrading a RNA substrate
Method: single particle / : Keidel A, Koegel A, Reichelt P, Kowalinski E, Schaefer IB, Conti E

EMDB-16953:
MurineArc type I Abeta fibril from tg-APPArcSwe mouse
Method: helical / : Zielinski M, Peralta Reyes FS, Gremer L, Schemmert S, Frieg B, Willuweit A, Donner L, Elvers M, Nilsson LNG, Syvanen S, Sehlin D, Ingelsson M, Willbold D, Schroeder GF

EMDB-18288:
CryoEM structure of a S. Cerevisiae Ski238 complex bound to RNA
Method: single particle / : Keidel A, Koegel A, Reichelt P, Kowalinski E, Schaefer IB, Conti E

EMDB-18326:
CryoEM structure of a S. Cerevisiae Ski2387 complex in the closed state bound to RNA
Method: single particle / : Keidel A, Koegel A, Reichelt P, Kowalinski E, Schaefer IB, Conti E

EMDB-18327:
CryoEM structure of a S. Cerevisiae Ski2387 complex in an intermediate state bound to RNA
Method: single particle / : Keidel A, Koegel A, Reichelt P, Kowalinski E, Schaefer IB, Conti E

EMDB-18328:
CryoEM structure of a S. Cerevisiae Ski2387 complex in the open state
Method: single particle / : Keidel A, Koegel A, Reichelt P, Kowalinski E, Schaefer IB, Conti E

EMDB-17787:
4.0 angstrom map of outward-facing MFS transporter MHAS2168, a homologue of M. tuberculosis Rv1410, in complex with a megabody
Method: single particle / : Remm S, Gonda I, Seeger MA

EMDB-16467:
Cryo-EM structure of the yeast SPT-Orm1-Monomer complex
Method: single particle / : Schaefer J, Koerner C, Parey K, Januliene D, Moeller A, Froehlich F

EMDB-16468:
Cryo-EM structure of the yeast SPT-Orm1-Sac1 complex
Method: single particle / : Schaefer J, Koerner C, Parey K, Januliene D, Moeller A, Froehlich F

EMDB-16469:
Cryo-EM structure of the yeast SPT-Orm1-Dimer complex
Method: single particle / : Schaefer J, Koerner C, Parey K, Januliene D, Moeller A, Froehlich F

EMDB-16485:
Cryo-EM structure of the yeast SPT-Orm1-Dimer complex, local refinement of a monomer
Method: single particle / : Schaefer J, Koerner C, Parey K, Januliene D, Moeller A, Froehlich F

EMDB-40272:
BtCoV-422 in complex with neutralizing antibody JC57-11
Method: single particle / : McFadden E, McLellan JS

EMDB-40306:
BtCoV-422 spike in complex with JC57-11 Fab, global map
Method: single particle / : McFadden E, McLellan JS

EMDB-40310:
BtCoV-422 spike in complex with JC57-11 Fab, local map
Method: single particle / : McFadden E, McLellan JS

EMDB-27703:
Structure of RBD directed antibody DH1047 in complex with SARS-CoV-2 spike: Local refinement of RBD-Fab interace
Method: single particle / : May AJ, Manne K, Acharya P

EMDB-16841:
S.cerevisiae THO complex from endogenous nuclear mRNPs
Method: single particle / : Bonneau F, Schaefer IB, Conti E

EMDB-16457:
Drosophila melanogaster Rab7 GEF complex Mon1-Ccz1-Bulli
Method: single particle / : Schaefer J, Herrmann E, Kuemmel D, Moeller A

EMDB-16462:
MCB complex from drosophila melanogaster, local refinement map of the bottom part of the complex
Method: single particle / : Schaefer J, Herrmann E, Kuemmel D, Moeller A

EMDB-16463:
MCB complex from drosophila melanogaster, local refinement map of the MCB core
Method: single particle / : Schaefer J, Herrmann E, Kuemmel D, Moeller A

EMDB-16464:
MCB complex from drosophila melanogaster, consensus refinement
Method: single particle / : Schaefer J, Herrmann E, Kuemmel D, Moeller A

EMDB-25618:
SARS-CoV-2 VFLIP spike boung to 2 Ab12 Fab fragments
Method: single particle / : Olmedillas E, Ollmann-Saphire E

EMDB-13404:
Nanodisc reconstituted MsbA in complex with nanobodies, spin-labeled at position A60C
Method: single particle / : Januliene D, Parey K, Galazzo L, Meier G, Vecchis D, Striednig B, Hilbi H, Schaefer LV, Kuprov I, Bordignon E, Seeger MA, Moeller A

EMDB-13405:
AMP-PNP bound nanodisc reconstituted MsbA with nanobodies, spin-labeled at position A60C
Method: single particle / : Januliene D, Parey K, Galazzo L, Meier G, Vecchis D, Striednig B, Hilbi H, Schaefer LV, Kuprov I, Bordignon E, Seeger MA, Moeller A

EMDB-13406:
AMP-PNP bound nanodisc reconstituted MsbA with nanobodies, spin-labeled at position T68C
Method: single particle / : Januliene D, Parey K, Galazzo L, Meier G, Vecchis D, Striednig B, Hilbi H, Schaefer LV, Kuprov I, Bordignon E, Seeger MA, Moeller A

EMDB-13409:
Nanodisc reconstituted MsbA in complex with nanobodies, spin-labeled at position T68C
Method: single particle / : Januliene D, Parey K, Galazzo L, Meier G, Vecchis D, Striednig B, Hilbi H, Schaefer LV, Kuprov I, Bordignon E, Seeger MA, Moeller A

EMDB-25663:
SARS-CoV-2 S (Spike Glycoprotein) D614G with Three (3) RBDs Up, Bound to Antibody 2-7 scFv, composite map
Method: single particle / : Byrne PO, McLellan JS

EMDB-25689:
SARS-CoV-2 S (Spike Glycoprotein) D614G with Three (3) RBDs Up, Bound to Antibody 2-7 scFv, global map with poorly-resolved RBDs and scFvs
Method: single particle / : Byrne PO, McLellan JS

EMDB-25690:
SARS-CoV-2 S (Spike Glycoprotein) D614G with Three (3) RBDs Up, Bound to Antibody 2-7 scFv, local refinement map
Method: single particle / : Byrne PO, McLellan JS

EMDB-25711:
SARS-CoV-2 S (Spike Glycoprotein) D614G with One(1) RBD Up
Method: single particle / : Byrne PO, McLellan JS

EMDB-27438:
Cryo-EM structure of SARS-CoV-2 Beta (B.1.351) spike protein in complex with VH domain F6
Method: single particle / : Zhu X, Saville JW, Mannar D, Berezuk AM, Subramaniam S

EMDB-27439:
Cryo-EM structure of SARS-CoV-2 Beta (B.1.351) spike protein in complex with VH domain F6 (focused refinement of RBD and VH F6)
Method: single particle / : Zhu X, Saville JW, Mannar D, Berezuk AM, Subramaniam S

EMDB-25171:
Cryo-EM structure of ACKR3 in complex with CXCL12, an intracellular Fab, and an extracellular Fab
Method: single particle / : Yen YC, Schafer CT, Gustavsson M, Handel TM, Tesmer JJG

EMDB-25172:
Cryo-EM structure of ACKR3 in complex with chemokine N-terminal mutant CXCL12_LRHQ, an intracellular Fab, and an extracellular Fab
Method: single particle / : Yen YC, Schafer CT, Gustavsson M, Handel TM, Tesmer JJG

EMDB-25173:
Cryo-EM structure of ACKR3 in complex with CXCL12 and an intracellular Fab
Method: single particle / : Yen YC, Schafer CT, Gustavsson M, Handel TM, Tesmer JJG

EMDB-25174:
Cryo-EM structure of human ACKR3 in complex with chemokine N-terminal mutant CXCL12_LRHQ and an intracellular Fab
Method: single particle / : Yen YC, Schafer CT, Gustavsson M, Handel TM, Tesmer JJG

EMDB-25175:
Cryo-EM structure of human ACKR3 in complex with CXCL12, a small molecule partial agonist CCX662, and an extracellular Fab
Method: single particle / : Yen YC, Schafer CT, Gustavsson M, Handel TM, Tesmer JJG

EMDB-25176:
Cryo-EM structure of human ACKR3 in complex with CXCL12, a small molecule partial agonist CCX662, an extracellular Fab, and an intracellular Fab
Method: single particle / : Yen YC, Schafer CT, Gustavsson M, Handel TM, Tesmer JJG

EMDB-25177:
Cryo-EM structure of human ACKR3 in complex with a small molecule partial agonist CCX662, and an intracellular Fab
Method: single particle / : Yen YC, Schafer CT, Gustavsson M, Handel TM, Tesmer JJG

PDB-7sk3:
Cryo-EM structure of ACKR3 in complex with CXCL12, an intracellular Fab, and an extracellular Fab
Method: single particle / : Yen YC, Schafer CT, Gustavsson M, Handel TM, Tesmer JJG

PDB-7sk4:
Cryo-EM structure of ACKR3 in complex with chemokine N-terminal mutant CXCL12_LRHQ, an intracellular Fab, and an extracellular Fab
Method: single particle / : Yen YC, Schafer CT, Gustavsson M, Handel TM, Tesmer JJG

PDB-7sk5:
Cryo-EM structure of ACKR3 in complex with CXCL12 and an intracellular Fab
Method: single particle / : Yen YC, Schafer CT, Gustavsson M, Handel TM, Tesmer JJG

PDB-7sk6:
Cryo-EM structure of human ACKR3 in complex with chemokine N-terminal mutant CXCL12_LRHQ and an intracellular Fab
Method: single particle / : Yen YC, Schafer CT, Gustavsson M, Handel TM, Tesmer JJG

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more