[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 41 items for (author: sakata & e)

EMDB-16781:
NTD focused cryo-EM map of p97/VCP in ADP.Pi state
Method: single particle / : Cheng TC, Sakata E, Schuetz AK

EMDB-17016:
Full composite cryo-EM map of p97/VCP in ADP.Pi state
Method: single particle / : Cheng TC, Sakata E, Schuetz AK

EMDB-17024:
D1-D2 ring focused cryo-EM map of p97/VCP in ADP.Pi state
Method: single particle / : Cheng TC, Sakata E, Schuetz AK

EMDB-17128:
Consensus cryo-EM map of p97/VCP in ADP.Pi state
Method: single particle / : Cheng TC, Sakata E, Schuetz AK

PDB-8ooi:
Full composite cryo-EM map of p97/VCP in ADP.Pi state
Method: single particle / : Cheng TC, Sakata E, Schuetz AK

EMDB-14083:
26S proteasome WT-Ubp6-UbVS complex in the si state (ATPases, Rpn1, Ubp6, and UbVS)
Method: single particle / : Hung KYS, Klumpe S, Eisele MR, Elsasser S, Geng TT, Cheng C, Joshi T, Rudack T, Sakata E, Finley D

PDB-7qo4:
26S proteasome WT-Ubp6-UbVS complex in the si state (ATPases, Rpn1, Ubp6, and UbVS)
Method: single particle / : Hung KYS, Klumpe S, Eisele MR, Elsasser S, Geng TT, Cheng C, Joshi T, Rudack T, Sakata E, Finley D

EMDB-14082:
Structure of the 26S proteasome-Ubp6 complex in the si state (Core Particle and Lid)
Method: single particle / : Hung KYS, Klumpe S, Eisele MR, Elsasser S, Geng TT, Cheng TC, Joshi T, Rudack T, Sakata E, Finley D

PDB-7qo3:
Structure of the 26S proteasome-Ubp6 complex in the si state (Core Particle and Lid)
Method: single particle / : Hung KYS, Klumpe S, Eisele MR, Elsasser S, Geng TT, Cheng TC, Joshi T, Rudack T, Sakata E, Finley D

EMDB-14084:
26S proteasome Rpt1-RK -Ubp6-UbVS complex in the si state
Method: single particle / : Hung KYS, Klumpe S, Eisele MR, Elsasser S, Geng TT, Cheng TC, Joshi T, Rudack T, Sakata E, Finley D

EMDB-14085:
26S proteasome Rpt1-RK -Ubp6-UbVS complex in the s2 state
Method: single particle / : Hung KYS, Klumpe S, Eisele MR, Elsasser S, Geng TT, Cheng TC, Joshi T, Rudack T, Sakata E, Finley D

PDB-7qo5:
26S proteasome Rpt1-RK -Ubp6-UbVS complex in the si state
Method: single particle / : Hung KYS, Klumpe S, Eisele MR, Elsasser S, Geng TT, Cheng TC, Joshi T, Rudack T, Sakata E, Finley D

PDB-7qo6:
26S proteasome Rpt1-RK -Ubp6-UbVS complex in the s2 state
Method: single particle / : Hung KYS, Klumpe S, Eisele MR, Elsasser S, Geng TT, Cheng TC, Joshi T, Rudack T, Sakata E, Finley D

EMDB-4322:
26S proteasome, s4 state
Method: single particle / : Eisele MR, Reed RG, Rudack T, Schweitzer A, Beck F, Nagy I, Pfeifer G, Plitzko JM, Baumeister W, Tomko RJ, Sakata E

PDB-6fvw:
26S proteasome, s4 state
Method: single particle / : Eisele MR, Reed RG, Rudack T, Schweitzer A, Beck F, Nagy I, Pfeifer G, Plitzko JM, Baumeister W, Tomko RJ, Sakata E

EMDB-4321:
26S proteasome, s3 state
Method: single particle / : Eisele MR, Reed RG, Rudack T, Schweitzer A, Beck F, Nagy I, Pfeifer G, Plitzko JM, Baumeister W, Tomko RJ, Sakata E

EMDB-4323:
26S proteasome, s5 state
Method: single particle / : Eisele MR, Reed RG, Rudack T, Schweitzer A, Beck F, Nagy I, Pfeifer G, Plitzko JM, Baumeister W, Tomko RJ, Sakata E

EMDB-4324:
26S proteasome, s6 state
Method: single particle / : Eisele MR, Reed RG, Rudack T, Schweitzer A, Beck F, Nagy I, Pfeifer G, Plitzko JM, Baumeister W, Tomko RJ, Sakata E

PDB-6fvt:
26S proteasome, s1 state
Method: single particle / : Eisele MR, Reed RG, Rudack T, Schweitzer A, Beck F, Nagy I, Pfeifer G, Plitzko JM, Baumeister W, Tomko RJ, Sakata E

PDB-6fvu:
26S proteasome, s2 state
Method: single particle / : Eisele MR, Reed RG, Rudack T, Schweitzer A, Beck F, Nagy I, Pfeifer G, Plitzko JM, Baumeister W, Tomko RJ, Sakata E

PDB-6fvv:
26S proteasome, s3 state
Method: single particle / : Eisele MR, Reed RG, Rudack T, Schweitzer A, Beck F, Nagy I, Pfeifer G, Plitzko JM, Baumeister W, Tomko RJ, Sakata E

PDB-6fvx:
26S proteasome, s5 state
Method: single particle / : Eisele MR, Reed RG, Rudack T, Schweitzer A, Beck F, Nagy I, Pfeifer G, Plitzko JM, Baumeister W, Tomko RJ, Sakata E

PDB-6fvy:
26S proteasome, s6 state
Method: single particle / : Eisele MR, Reed RG, Rudack T, Schweitzer A, Beck F, Nagy I, Pfeifer G, Plitzko JM, Baumeister W, Tomko RJ, Sakata E

EMDB-4089:
The human 26S Proteasome at 6.8 Ang.
Method: single particle / : Schweitzer A, Beck F, Sakata E, Unverdorben P

PDB-5ln3:
The human 26S Proteasome at 6.8 Ang.
Method: single particle / : Schweitzer A, Beck F, Sakata E, Unverdorben P

EMDB-3534:
26S proteasome in presence of ATP (s1)
Method: single particle / : Wehmer M, Rudack T, Beck F, Aufderheide A, Pfeifer G, Plitzko JM, Foerster F, Schulten K, Baumeister W, Sakata E

EMDB-3535:
26S proteasome in presence of ATP (s2)
Method: single particle / : Wehmer M, Rudack T, Beck F, Aufderheide A, Pfeifer G, Plitzko JM, Foerster F, Schulten K, Baumeister W, Sakata E

EMDB-3536:
26S proteasome in presence of AMP-PNP (s3)
Method: single particle / : Wehmer M, Rudack T, Beck F, Aufderheide A, Pfeifer G, Plitzko JM, Foerster F, Schulten K, Baumeister W, Sakata E

EMDB-3537:
26S proteasome in presence of BeFx (s4)
Method: single particle / : Wehmer M, Rudack T, Beck F, Aufderheide A, Pfeifer G, Plitzko JM, Foerster F, Schulten K, Baumeister W, Sakata E

PDB-5mp9:
26S proteasome in presence of ATP (s1)
Method: single particle / : Wehmer M, Rudack T, Beck F, Aufderheide A, Pfeifer G, Plitzko JM, Foerster F, Schulten K, Baumeister W, Sakata E

PDB-5mpa:
26S proteasome in presence of ATP (s2)
Method: single particle / : Wehmer M, Rudack T, Beck F, Aufderheide A, Pfeifer G, Plitzko JM, Foerster F, Schulten K, Baumeister W, Sakata E

PDB-5mpb:
26S proteasome in presence of AMP-PNP (s3)
Method: single particle / : Wehmer M, Rudack T, Beck F, Aufderheide A, Pfeifer G, Plitzko JM, Foerster F, Schulten K, Baumeister W, Sakata E

PDB-5mpc:
26S proteasome in presence of BeFx (s4)
Method: single particle / : Wehmer M, Rudack T, Beck F, Aufderheide A, Pfeifer G, Plitzko JM, Foerster F, Schulten K, Baumeister W, Sakata E

PDB-5mpd:
26S proteasome in presence of ATP (s1)
Method: single particle / : Wehmer M, Rudack T, Beck F, Aufderheide A, Pfeifer G, Plitzko JM, Foerster F, Schulten K, Baumeister W, Sakata E

PDB-5mpe:
26S proteasome in presence of ATP (s2)
Method: single particle / : Wehmer M, Rudack T, Beck F, Aufderheide A, Pfeifer G, Plitzko JM, Foerster F, Schulten K, Baumeister W, Sakata E

PDB-5l4g:
The human 26S proteasome at 3.9 A
Method: single particle / : Schweitzer A, Aufderheide A, Rudack T, Beck F

PDB-5l4k:
The human 26S proteasome lid
Method: single particle / : Schweitzer A, Aufderheide A, Rudack T, Beck F

EMDB-4002:
The human 26S proteasome at 3.9
Method: single particle / : Schweitzer A, Aufderheide A, Rudack T, Beck F

PDB-5a5b:
Structure of the 26S proteasome-Ubp6 complex
Method: single particle / : Aufderheide A, Beck F, Stengel F, Hartwig M, Schweitzer A, Pfeifer G, Goldberg AL, Sakata E, Baumeister W, Foerster F

EMDB-3034:
Structure of the 26S proteasome-Ubp6 complex
Method: single particle / : Aufderheide A, Beck F, Stengel F, Hartwig M, Schweitzer A, Pfeifer G, Goldberg AL, Sakata E, Baumeister W, Foerster F

EMDB-2165:
Cryo-EM reconstruction of the yeast 26S proteasome
Method: single particle / : Beck F, Unverdorben P, Bohn S, Schweitzer A, Pfeifer G, Sakata E, Nickell S, Plitzko JM, Villa E, Baumeister W, Forster F

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more