[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 103 items for (author: s. & m. & lok)

PDB-8vxq:
Cryo-EM structure of phage DEV ejection proteins gp72:gp73
Method: single particle / : Iglesias SM, Cingolani G

PDB-8tvu:
In situ cryo-EM structure of bacteriophage P22 portal protein: head-to-tail protein complex at 3.0A resolution
Method: single particle / : Iglesias SM, Cingolani G, Feng-Hou C

PDB-8u1o:
In situ cryo-EM structure of bacteriophage P22 tailspike protein complex at 3.4A resolution
Method: single particle / : Iglesias SM, Feng-Hou C, Cingolani G

PDB-7y71:
SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7
Method: single particle / : Chia WN, Tan CW, Tan AWK, Young B, Starr TN, Lopez E, Fibriansah G, Barr J, Cheng S, Yeoh AYY, Yap WC, Lim BL, Ng TS, Sia WR, Zhu F, Chen S, Zhang J, Greaney AJ, Chen M, Au GG, Paradkar P, Peiris M, Chung AW, Bloom JD, Lye D, Lok SM, Wang LF

PDB-7y72:
SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7 (focused refinement on Fab-RBD interface)
Method: single particle / : Chia WN, Tan CW, Tan AWK, Young B, Starr TN, Lopez E, Fibriansah G, Barr J, Cheng S, Yeoh AYY, Yap WC, Lim BL, Ng TS, Sia WR, Zhu F, Chen S, Zhang J, Greaney AJ, Chen M, Au GG, Paradkar P, Peiris M, Chung AW, Bloom JD, Lye D, Lok SM, Wang LF

PDB-8fu7:
Structure of Covid Spike variant deltaN135 in fully closed form
Method: single particle / : Yu X, Juraszek J, Rutten L, Bakkers MJG, Blokland S, Van den Broek NJF, Verwilligen AYW, Abeywickrema P, Vingerhoets J, Neefs J, Bakhash SAM, Roychoudhury P, Greninger A, Sharma S, Langedijk JPM

PDB-8fu8:
Structure of Covid Spike variant deltaN135 with one erect RBD
Method: single particle / : Yu X, Juraszek J, Rutten L, Bakkers MJG, Blokland S, Van den Broek NJF, Verwilligen AYW, Abeywickrema P, Vingerhoets J, Neefs J, Bakhash SAM, Roychoudhury P, Greninger A, Sharma S, Langedijk JPM

PDB-8fu9:
Structure of Covid Spike variant deltaN25 with one erect RBD
Method: single particle / : Yu X, Juraszek J, Rutten L, Bakkers MJG, Blokland S, Van den Broek NJF, Verwilligen AYW, Abeywickrema P, Vingerhoets J, Neefs J, Bakhash SAM, Roychoudhury P, Greninger A, Sharma S, Langedijk JPM

PDB-8g86:
Human Oct4 bound to nucleosome with human nMatn1 sequence (focused refinement of nucleosome)
Method: single particle / : Sinha KK, Bilokapic S, Du Y, Malik D, Halic M

PDB-8g87:
Human Oct4 bound to nucleosome with human nMatn1 sequence (focused refinement of Oct4 bound region)
Method: single particle / : Sinha KK, Bilokapic S, Du Y, Malik D, Halic M

PDB-8g88:
Human Oct4 bound to nucleosome with human nMatn1 sequence
Method: single particle / : Sinha KK, Bilokapic S, Du Y, Malik D, Halic M

PDB-8g8b:
Nucleosome with human nMatn1 sequence in complex with Human Oct4
Method: single particle / : Sinha KK, Bilokapic S, Du Y, Malik D, Halic M

PDB-8g8e:
Human Oct4 bound to nucleosome with human LIN28B sequence
Method: single particle / : Sinha KK, Bilokapic S, Du Y, Malik D, Halic M

PDB-8g8g:
Interaction of H3 tail in LIN28B nucleosome with Oct4
Method: single particle / : Sinha KK, Bilokapic S, Du Y, Malik D, Halic M

PDB-7wur:
CryoEM structure of sNS1 complexed with Fab5E3
Method: single particle / : Shu B, Lok SM

PDB-7wus:
CryoEM structure of a dimer of loose sNS1 tetramer
Method: single particle / : Shu B, Lok SM

PDB-7wut:
CryoEM structure of stable sNS1 tetramer
Method: single particle / : Shu B, Ooi JSG, Lok SM

PDB-7wuu:
CryoEM structure of loose sNS1 tetramer
Method: single particle / : Shu B, Lok SM

PDB-7wuv:
CryoEM structure of sNS1 hexamer
Method: single particle / : Shu B, Ooi JSG, Lok SM

PDB-8esq:
Ytm1 associated nascent 60S ribosome State 2
Method: single particle / : Zhou X, Bilokapic S, Deshmukh AA, Halic M

PDB-8esr:
Ytm1 associated nascent 60S ribosome (-fkbp39) State 2
Method: single particle / : Zhou X, Bilokapic S, Deshmukh AA, Halic M

PDB-8etc:
Fkbp39 associated nascent 60S ribosome State 4
Method: single particle / : Zhou X, Bilokapic S, Deshmukh AA, Halic M

PDB-8etg:
Fkbp39 associated 60S nascent ribosome State 3
Method: single particle / : Zhou X, Bilokapic S, Deshmukh AA, Halic M

PDB-8eth:
Ytm1 associated 60S nascent ribosome State 1B
Method: single particle / : Zhou X, Bilokapic S, Deshmukh AA, Halic M

PDB-8eti:
Fkbp39 associated 60S nascent ribosome State 1
Method: single particle / : Zhou X, Bilokapic S, Deshmukh AA, Halic M

PDB-8etj:
Fkbp39 associated 60S nascent ribosome State 2
Method: single particle / : Zhou X, Bilokapic S, Deshmukh AA, Halic M

PDB-8eug:
Ytm1 associated nascent 60S ribosome State 3
Method: single particle / : Zhou X, Bilokapic S, Deshmukh AA, Halic M

PDB-8eui:
Ytm1 associated nascent 60S ribosome (-fkbp39) State 3
Method: single particle / : Zhou X, Bilokapic S, Deshmukh AA, Halic M

PDB-8eup:
Ytm1 associated 60S nascent ribosome State 1A
Method: single particle / : Zhou X, Bilokapic S, Deshmukh AA, Halic M

PDB-8euy:
Ytm1 associated nascent 60S ribosome (-fkbp39) State 1A
Method: single particle / : Zhou X, Bilokapic S, Deshmukh AA, Halic M

PDB-8ev3:
Ytm1 associated 60S nascent ribosome (-Fkbp39) State 1B
Method: single particle / : Zhou X, Bilokapic S, Deshmukh AA, Halic M

PDB-7v3f:
DENV2_NGC_Fab_C10 28degree (1Fab:3E)
Method: single particle / : Shu B, Zhang S, Victor AK, Ng TS, Lok SM

PDB-7v3g:
DENV2_NGC_Fab_C10 28degrees (2Fab:3E)
Method: single particle / : Shu B, Zhang S, Victor AK, Ng TS, Lok SM

PDB-7v3h:
DENV2_NGC_Fab_C10 28degrees (3Fab:3E)
Method: single particle / : Shu B, Zhang S, Victor AK, Ng TS, Lok SM

PDB-7v3i:
DENV2_NGC_Fab_C10 4degrees (3Fab:3E)
Method: single particle / : Shu B, Zhang S, Victor AK, Ng TS, Lok SM

PDB-7v3j:
DENV2:F(ab')2-local
Method: single particle / : Shu B, Zhang S, Victor AK, Ng TS, Lok SM

PDB-7p9u:
Cryo EM structure of System XC- in complex with glutamate
Method: single particle / : Parker JL, Deme JC, Lea SM, Newstead S

PDB-7p9v:
Cryo EM structure of System XC-
Method: single particle / : Parker JL, Deme JC, Lea SM, Newstead S

PDB-7dwt:
Cryo-EM structure of Dengue virus serotype 1 strain WestPac 74 in complex with human antibody 1C19 Fab at 37 deg C (Class 1 particle)
Method: single particle / : Fibriansah G, Ng TS, Kostyuchenko VA, Shi J, Lok SM

PDB-7dwu:
Cryo-EM structure of Dengue virus serotype 1 strain WestPac 74 in complex with human antibody 1C19 Fab at 37 deg C (Class 2 particle)
Method: single particle / : Fibriansah G, Ng TS, Kostyuchenko VA, Shi J, Lok SM

PDB-7cvy:
Cryo-EM structure of Chikungunya virus in complex with Fab fragments of mAb CHK-124
Method: single particle / : Zhou QF, Fox JM, Earnest JT, Ng TS, Kim AS, Fibriansah G, Kostyuchenko VA, Shu B, Diamond MS, Lok SM

PDB-7cvz:
Cryo-EM structure of Chikungunya virus in complex with Fab fragments of mAb CHK-263
Method: single particle / : Zhou QF, Fox JM, Earnest JT, Ng TS, Kim AS, Fibriansah G, Kostyuchenko VA, Shu B, Diamond MS, Lok SM

PDB-7cw0:
Cryo-EM structure of Chikungunya virus in complex with mAb CHK-263 IgG
Method: single particle / : Zhou QF, Fox JM, Earnest JT, Ng TS, Kim AS, Fibriansah G, Kostyuchenko VA, Shu B, Diamond MS, Lok SM

PDB-7cw2:
Cryo-EM structure of Chikungunya virus in complex with Fab fragments of mAb CHK-263 (subregion around icosahedral 5-fold vertex)
Method: single particle / : Zhou QF, Fox JM, Earnest JT, Ng TS, Kim AS, Fibriansah G, Kostyuchenko VA, Shu B, Diamond MS, Lok SM

PDB-7cw3:
Cryo-EM structure of Chikungunya virus in complex with mAb CHK-263 IgG (subregion around icosahedral 2-fold vertex)
Method: single particle / : Zhou QF, Fox JM, Earnest JT, Ng TS, Kim AS, Fibriansah G, Kostyuchenko VA, Shu B, Diamond MS, Lok SM

PDB-6wz5:
Bridging of double-strand DNA break activates PARP2/HPF1 to modify chromatin
Method: single particle / : Halic M, Bilokapic S

PDB-6wz9:
Bridging of double-strand DNA break activates PARP2/HPF1 to modify chromatin
Method: single particle / : Halic M, Bilokapic S

PDB-6x0l:
Bridging of double-strand DNA break activates PARP2/HPF1 to modify chromatin
Method: single particle / : Halic M, Bilokapic S

PDB-6x0m:
Bridging of double-strand DNA break activates PARP2/HPF1 to modify chromatin
Method: single particle / : Halic M, Bilokapic S

PDB-6x0n:
Bridging of double-strand DNA break activates PARP2/HPF1 to modify chromatin
Method: single particle / : Halic M, Bilokapic S

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more