[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 66 items for (author: rizo & j)

EMDB-27971:
V-K CAST Transpososome from Scytonema hofmanni, major configuration
Method: single particle / : Rizo AN, Park JU, Tsai AW, Kellogg EH

EMDB-27972:
V-K CAST Transpososome from Scytonema hofmanni, minor configuration
Method: single particle / : Rizo AR, Park JU, Tsai AW, Kellogg EK

PDB-8ea3:
V-K CAST Transpososome from Scytonema hofmanni, major configuration
Method: single particle / : Rizo AN, Park JU, Tsai AW, Kellogg EH

PDB-8ea4:
V-K CAST Transpososome from Scytonema hofmanni, minor configuration
Method: single particle / : Rizo AR, Park JU, Tsai AW, Kellogg EK

EMDB-25453:
TnsBctd-TnsC-TniQ complex
Method: single particle / : Park J, Tsai AWT, Kellogg EH

PDB-7svu:
TnsBctd-TnsC-TniQ complex
Method: single particle / : Park J, Tsai AWT, Kellogg EH

EMDB-26121:
Skd3_ATPyS_FITC-casein Hexamer, AAA+ only
Method: single particle / : Rizo AN

EMDB-26122:
Skd3, hexamer, filtered
Method: single particle / : Rizo AN, Cupo RR

PDB-7ttr:
Skd3_ATPyS_FITC-casein Hexamer, AAA+ only
Method: single particle / : Rizo AN

PDB-7tts:
Skd3, hexamer, filtered
Method: single particle / : Rizo AN, Cupo RR

EMDB-27730:
SARS-CoV-2 Wuhan-hu-1-Spike-RBD bound to linker variant of affinity matured ACE2 mimetic CVD432
Method: single particle / : QCRG Structural Biology Consortium, Remesh SG, Merz GE, Brilot AF, Chio U, Verba KA

EMDB-27731:
SARS-CoV-2 Wuhan-hu-1-Spike-RBD bound to computationally engineered ACE2 mimetic CVD293
Method: single particle / : QCRG Structural Biology Consortium, Remesh SG, Merz GE, Brilot AF, Chio U, Verba KA

PDB-8dv1:
SARS-CoV-2 Wuhan-hu-1-Spike-RBD bound to linker variant of affinity matured ACE2 mimetic CVD432
Method: single particle / : QCRG Structural Biology Consortium, Remesh SG, Merz GE, Brilot AF, Chio U, Verba KA

PDB-8dv2:
SARS-CoV-2 Wuhan-hu-1-Spike-RBD bound to computationally engineered ACE2 mimetic CVD293
Method: single particle / : QCRG Structural Biology Consortium, Remesh SG, Merz GE, Brilot AF, Chio U, Verba KA

EMDB-26455:
Cryo-EM structure of a synaptobrevin-Munc18-1-syntaxin-1 complex class 2
Method: single particle / : Rizo J, Bai X, Stepien KP, Xu J, Zhang X

EMDB-26456:
cryo-EM structures of a synaptobrevin-Munc18-1-syntaxin-1 complex class1
Method: single particle / : Rizo J, Bai X, Stepien KP, Xu J, Zhang X

PDB-7udb:
Cryo-EM structure of a synaptobrevin-Munc18-1-syntaxin-1 complex class 2
Method: single particle / : Rizo J, Bai X, Stepien KP, Xu J, Zhang X

PDB-7udc:
cryo-EM structures of a synaptobrevin-Munc18-1-syntaxin-1 complex class1
Method: single particle / : Rizo J, Bai X, Stepien KP, Xu J, Zhang X

EMDB-23970:
Full length SARS-CoV-2 Nsp2
Method: single particle / : QCRG Structural Biology Consortium

EMDB-23971:
SARS-CoV-2 Nsp2
Method: single particle / : QCRG Structural Biology Consortium

PDB-7msw:
Full length SARS-CoV-2 Nsp2
Method: single particle / : QCRG Structural Biology Consortium

PDB-7msx:
SARS-CoV-2 Nsp2
Method: single particle / : QCRG Structural Biology Consortium

EMDB-22907:
SARS-CoV-2 Spike bound to Nb6 in closed conformation
Method: single particle / : Schoof MS, Faust BF, Saunders RA, Sangwan S, Rezelj V, Hoppe N, Boone M, Billesboelle CB, Puchades C, Azumaya CM, Kratochvil HT, Zimanyi M, Desphande I, Liang J, Dickinson S, Nguyen HC, Chio CM, Merz GE, Thompson MC, Diwanji D, Schaefer K, Anand AA, Dobzinski N, Zha BS, Simoneau CR, Leon K, White KM, Chio US, Gupta M, Jin M, Li F, Liu Y, Zhang K, Bulkley D, Sun M, Smith AM, Rizo AN, Moss F, Brilot AF, Pourmal S, Trenker R, Pospiech T, Gupta S, Barsi-Rhyne B, Belyy V, Barile-Hill AW, Nock S, Krogan NJ, Ralston CY, Swaney DL, Garcia-Sastre A, Ott M, Vignuzzi M, Walter P, Manglik A, QCRG Structural Biology Consortium

EMDB-22908:
SARS-CoV-2 Spike bound to Nb6 in open conformation
Method: single particle / : Schoof MS, Faust BF, Saunders RA, Sangwan S, Rezelj V, Hoppe N, Boone M, Billesboelle CB, Puchades C, Azumaya CM, Kratochvil HT, Zimanyi M, Desphande I, Liang J, Dickinson S, Nguyen HC, Chio CM, Merz GE, Thompson MC, Diwanji D, Schaefer K, Anand AA, Dobzinski N, Zha BS, Simoneau CR, Leon K, White KM, Chio US, Gupta M, Jin M, Li F, Liu Y, Zhang K, Bulkley D, Sun M, Smith AM, Rizo AN, Moss F, Brilot AF, Pourmal S, Trenker R, Pospiech T, Gupta S, Barsi-Rhyne B, Belyy V, Barile-Hill AW, Nock S, Krogan NJ, Ralston CY, Swaney DL, Garcia-Sastre A, Ott M, Vignuzzi M, Walter P, Manglik A, QCRG Structural Biology Consortium

EMDB-22909:
SARS-CoV-2 Spike bound to Nb11 in closed conformation
Method: single particle / : Schoof MS, Faust BF, Saunders RA, Sangwan S, Rezelj V, Hoppe N, Boone M, Billesboelle CB, Puchades C, Azumaya CM, Kratochvil HT, Zimanyi M, Desphande I, Liang J, Dickinson S, Nguyen HC, Chio CM, Merz GE, Thompson MC, Diwanji D, Schaefer K, Anand AA, Dobzinski N, Zha BS, Simoneau CR, Leon K, White KM, Chio US, Gupta M, Jin M, Li F, Liu Y, Zhang K, Bulkley D, Sun M, Smith AM, Rizo AN, Moss F, Brilot AF, Pourmal S, Trenker R, Pospiech T, Gupta S, Barsi-Rhyne B, Belyy V, Barile-Hill AW, Nock S, Krogan NJ, Ralston CY, Swaney DL, Garcia-Sastre A, Ott M, Vignuzzi M, Walter P, Manglik A, QCRG Structural Biology Consortium

EMDB-22910:
SARS-CoV-2 Spike bound to mNb6 in closed conformation
Method: single particle / : Schoof MS, Faust BF, Saunders RA, Sangwan S, Rezelj V, Hoppe N, Boone M, Billesboelle CB, Puchades C, Azumaya CM, Kratochvil HT, Zimanyi M, Desphande I, Liang J, Dickinson S, Nguyen HC, Chio CM, Merz GE, Thompson MC, Diwanji D, Schaefer K, Anand AA, Dobzinski N, Zha BS, Simoneau CR, Leon K, White KM, Chio US, Gupta M, Jin M, Li F, Liu Y, Zhang K, Bulkley D, Sun M, Smith AM, Rizo AN, Moss F, Brilot AF, Pourmal S, Trenker R, Pospiech T, Gupta S, Barsi-Rhyne B, Belyy V, Barile-Hill AW, Nock S, Krogan NJ, Ralston CY, Swaney DL, Garcia-Sastre A, Ott M, Vignuzzi M, Walter P, Manglik A, QCRG Structural Biology Consortium

EMDB-22911:
SARS-CoV-2 Spike bound to Nb11 in open conformation
Method: single particle / : Schoof MS, Faust BF, Saunders RA, Sangwan S, Rezelj V, Hoppe N, Boone M, Billesboelle CB, Puchades C, Azumaya CM, Kratochvil HT, Zimanyi M, Desphande I, Liang J, Dickinson S, Nguyen HC, Chio CM, Merz GE, Thompson MC, Diwanji D, Schaefer K, Anand AA, Dobzinski N, Zha BS, Simoneau CR, Leon K, White KM, Chio US, Gupta M, Jin M, Li F, Liu Y, Zhang K, Bulkley D, Sun M, Smith AM, Rizo AN, Moss F, Brilot AF, Pourmal S, Trenker R, Pospiech T, Gupta S, Barsi-Rhyne B, Belyy V, Barile-Hill AW, Nock S, Krogan NJ, Ralston CY, Swaney DL, Garcia-Sastre A, Ott M, Vignuzzi M, Walter P, Manglik A, QCRG Structural Biology Consortium

PDB-7kkk:
SARS-CoV-2 Spike in complex with neutralizing nanobody Nb6
Method: single particle / : Schoof MS, Faust BF, Saunders RA, Sangwan S, Rezelj V, Hoppe N, Boone M, Billesboelle CB, Puchades C, Azumaya CM, Kratochvil HT, Zimanyi M, Desphande I, Liang J, Dickinson S, Nguyen HC, Chio CM, Merz GE, Thompson MC, Diwanji D, Schaefer K, Anand AA, Dobzinski N, Zha BS, Simoneau CR, Leon K, White KM, Chio US, Gupta M, Jin M, Li F, Liu Y, Zhang K, Bulkley D, Sun M, Smith AM, Rizo AN, Moss F, Brilot AF, Pourmal S, Trenker R, Pospiech T, Gupta S, Barsi-Rhyne B, Belyy V, Barile-Hill AW, Nock S, Liu Y, Krogan NJ, Ralston CY, Swaney DL, Garcia-Sastre A, Ott M, Vignuzzi M, Walter P, Manglik A, QCRG Structural Biology Consortium

PDB-7kkl:
SARS-CoV-2 Spike in complex with neutralizing nanobody mNb6
Method: single particle / : Schoof MS, Faust BF, Saunders RA, Sangwan S, Rezelj V, Hoppe N, Boone M, Billesboelle CB, Puchades C, Azumaya CM, Kratochvil HT, Zimanyi M, Desphande I, Liang J, Dickinson S, Nguyen HC, Chio CM, Merz GE, Thompson MC, Diwanji D, Schaefer K, Anand AA, Dobzinski N, Zha BS, Simoneau CR, Leon K, White KM, Chio US, Gupta M, Jin M, Li F, Liu Y, Zhang K, Bulkley D, Sun M, Smith AM, Rizo AN, Moss F, Brilot AF, Pourmal S, Trenker R, Pospiech T, Gupta S, Barsi-Rhyne B, Belyy V, Barile-Hill AW, Nock S, Liu Y, Krogan NJ, Ralston CY, Swaney DL, Garcia-Sastre A, Ott M, Vignuzzi M, Walter P, Manglik A, QCRG Structural Biology Consortium

EMDB-22829:
Human Tom70 in complex with SARS CoV2 Orf9b
Method: single particle / : QCRG Structural Biology Consortium

PDB-7kdt:
Human Tom70 in complex with SARS CoV2 Orf9b
Method: single particle / : QCRG Structural Biology Consortium

EMDB-21521:
ClpAP Engaged2 State bound to RepA-GFP
Method: single particle / : Lopez KL, Rizo AN

PDB-6w21:
ClpAP Engaged2 State bound to RepA-GFP
Method: single particle / : Lopez KL, Rizo AN, Tse E, Lin J, Scull NW, Thwin AC, Lucius AL, Shorter J, Southworth DR

EMDB-21519:
ClpAP Engaged1 State bound to RepA-GFP
Method: single particle / : Lopez KL, Rizo AN

EMDB-21520:
ClpAP Disengaged State bound to RepA-GFP
Method: single particle / : Lopez KL, Rizo AN

EMDB-21523:
ClpA Disengaged State bound to RepA-GFP (Focused Classification)
Method: single particle / : Lopez KL, Rizo AN

EMDB-21524:
ClpA Engaged2 State bound to RepA-GFP (Focused Classification)
Method: single particle / : Lopez KL, Rizo AN

PDB-6w1z:
ClpAP Engaged1 State bound to RepA-GFP
Method: single particle / : Lopez KL, Rizo AN, Tse E, Lin J, Scull NW, Thwin AC, Lucius AL, Shorter J, Southworth DR

PDB-6w20:
ClpAP Disengaged State bound to RepA-GFP
Method: single particle / : Lopez KL, Rizo AN, Tse E, Lin J, Scull NW, Thwin AC, Lucius AL, Shorter J, Southworth DR

PDB-6w23:
ClpA Disengaged State bound to RepA-GFP (Focused Classification)
Method: single particle / : Lopez KL, Rizo AN, Tse E, Lin J, Scull NW, Thwin AC, Lucius AL, Shorter J, Southworth DR

PDB-6w24:
ClpA Engaged2 State bound to RepA-GFP (Focused Classification)
Method: single particle / : Lopez KL, Rizo AN, Tse E, Lin J, Scull NW, Thwin AC, Lucius AL, Shorter J, Southworth DR

EMDB-21522:
ClpA Engaged1 State bound to RepA-GFP (ClpA Focused Refinement)
Method: single particle / : Lopez KL, Rizo AN

PDB-6w22:
ClpA Engaged1 State bound to RepA-GFP (ClpA Focused Refinement)
Method: single particle / : Lopez KL, Rizo AN, Tse E, Lin J, Scull NW, Thwin AC, Lucius AL, Shorter J, Southworth DR

EMDB-20845:
ClpA/ClpP Disengaged State bound to RepA-GFP
Method: single particle / : Lopez KL, Rizo AR, Southworth DR

EMDB-20851:
ClpA/ClpP Engaged State bound to RepA-GFP
Method: single particle / : Lopez KL, Rizo AN, Southworth DR

PDB-6uqe:
ClpA/ClpP Disengaged State bound to RepA-GFP
Method: single particle / : Lopez KL, Rizo AR, Southworth DR

PDB-6uqo:
ClpA/ClpP Engaged State bound to RepA-GFP
Method: single particle / : Lopez KL, Rizo AN, Southworth DR

EMDB-20004:
CryoEM map of the hyperactive ClpB mutant K476C, bound to casein, pre-state
Method: single particle / : Rizo AR, Lin JB

EMDB-20005:
CryoEM map of the hyperactive ClpB mutant K476C, bound to casein, post-state
Method: single particle / : Rizo AR, Lin JB

EMDB-20049:
CryoEM focus classification map of the hyperactive ClpB mutant K476C, bound to casein, pre-state
Method: single particle / : Rizo AR, Lin JB

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more