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Showing all 45 items for (author: prakash & l)

PDB-7uih:
PSMD2 Structure
Method: single particle / : Johnson MC, Bashore C, Ciferri C, Dueber EC

PDB-7ujd:
PSMD2 Structure bound to MC1 and Fab8/14
Method: single particle / : Johnson MC, Bashore C, Ciferri C, Dueber EC

EMDB-24742:
PSMD2 with bound macrocycle MC1
Method: single particle / : Johnson MC, Bashore C, Ciferri C, Dueber EC

EMDB-24743:
PSMD2
Method: single particle / : Johnson MC, Bashore C, Ciferri C, Dueber EC

EMDB-24793:
Structure of DNA polymerase zeta with mismatched DNA
Method: single particle / : Malik R, Ubarretxena IB, Aggarwal AK

PDB-7s0t:
Structure of DNA polymerase zeta with mismatched DNA
Method: single particle / : Malik R, Ubarretxena IB, Aggarwal AK

EMDB-23717:
SARS-CoV-2 S-NTD + Fab CM25
Method: single particle / : Johnson NV, Mclellan JS

PDB-7m8j:
SARS-CoV-2 S-NTD + Fab CM25
Method: single particle / : Johnson NV, Mclellan JS

EMDB-22890:
Plasmodium falciparum RhopH complex in soluble form
Method: single particle / : Schureck MA, Darling JE, Merk A, Subramaniam S, Desai SA

PDB-7kiy:
Plasmodium falciparum RhopH complex in soluble form
Method: single particle / : Schureck MA, Darling JE, Merk A, Subramaniam S, Desai SA

EMDB-21108:
Structure of DNA Polymerase Zeta (Apo)
Method: single particle / : Malik R, Gomez-Llorente Y, Ubarretxena-Belandia I, Aggarwal AK

EMDB-21115:
Structure of DNA Polymerase Zeta/DNA/dNTP Ternary Complex
Method: single particle / : Malik R, Kopylov M, Jain R, Ubarrextena-Belandia I, Aggarwal AK

PDB-6v8p:
Structure of DNA Polymerase Zeta (Apo)
Method: single particle / : Malik R, Gomez-Llorente Y, Ubarretxena-Belandia I, Aggarwal AK

PDB-6v93:
Structure of DNA Polymerase Zeta/DNA/dNTP Ternary Complex
Method: single particle / : Malik R, Kopylov M, Jain R, Ubarrextena-Belandia I, Aggarwal AK

EMDB-20235:
Structure of a complex
Method: single particle / : Jain R, Rice W, Aggarwal AK

PDB-6p1h:
Cryo-EM Structure of DNA Polymerase Delta Holoenzyme
Method: single particle / : Jain R, Rice W, Aggarwal AK

EMDB-0103:
Identification of a druggable VP1-VP3 interprotomer pocket in the capsid of enteroviruses
Method: single particle / : Geraets JA, Flatt JW, Domanska A, Butcher SJ

PDB-6gzv:
Identification of a druggable VP1-VP3 interprotomer pocket in the capsid of enteroviruses
Method: single particle / : Geraets JA, Flatt JW, Domanska A, Butcher SJ

PDB-5l9t:
Model of human Anaphase-promoting complex/Cyclosome (APC/C-CDH1) with E2 UBE2S poised for polyubiquitination where UBE2S, APC2, and APC11 are modeled into low resolution density
Method: single particle / : Brown NG, VanderLinden R, Dube P, Haselbach D, Peters JM, Stark H, Schulman BA

PDB-5l9u:
Model of human Anaphase-promoting complex/Cyclosome (APC/C-CDH1) with a cross linked Ubiquitin variant-substrate-UBE2C (UBCH10) complex representing key features of multiubiquitination
Method: single particle / : Brown NG, VanderLinden R, Dube P, Haselbach D, Peters JM, Stark H, Schulman BA

PDB-5khu:
Model of human Anaphase-promoting complex/Cyclosome (APC15 deletion mutant), in complex with the Mitotic checkpoint complex (APC/C-CDC20-MCC) based on cryo EM data at 4.8 Angstrom resolution
Method: single particle / : Yamaguchi M, VanderLinden R, Dube P, Stark H, Schulman B

PDB-5khr:
Model of human Anaphase-promoting complex/Cyclosome complex (APC15 deletion mutant) in complex with the E2 UBE2C/UBCH10 poised for ubiquitin ligation to substrate (APC/C-CDC20-substrate-UBE2C)
Method: single particle / : VanderLinden R, Yamaguchi M, Dube P, Haselbach D, Stark H, Schulman BA

EMDB-4021:
Human Anaphase-Promoting Complex/Cyclosome (APC/C) APC15 deletion mutant with Mitotic Checkpoint Complex (MCC) in a closed conformation.
Method: single particle / : Stark H, Schulman B, Peters JM

EMDB-4022:
Human Anaphase-Promoting Complex/Cyclosome (APC/C) APC15 deletion mutant with Mitotic Checkpoint Complex (MCC) in an open conformation.
Method: single particle / : Stark H, Schulman BA, Peters JM

EMDB-4023:
Human Anaphase-Promoting Complex/Cyclosome bound to Mitotic Checkpoint Complex (APC/C-MCC) in a closed conformation.
Method: single particle / : Stark H, Schulman BA, Peters JM

EMDB-4024:
Human Anaphase-promoting complex/Cyclosome bound to Mitotic Checkpoint Complex(APC/C-MCC) in an open conformation.
Method: single particle / : Stark H, Schulman BA, Peters JM

EMDB-4025:
Human Anaphase-promoting complex/Cyclosome (APC/C) APC15 deletion mutant bound to the E2 UBE2C (aka UBCH10) poised for ubiquitin ligation to substrate.
Method: single particle / : Stark H, Schulman BA, Peters JM

EMDB-4026:
Human Anaphase-Promoting Complex/Cyclosome (APC/C) APC15 deletion mutant bound to Mitotic Checkpoint Complex (MCC) and the E2 UBE2S poised for UB chain synthesis.
Method: single particle / : Stark H, Schulman BA, Peters JM

EMDB-4027:
Human Anaphase-Promoting Complex/Cyclosome bound to Mitotic Checkpoint Complex (APC/C-MCC) and the E2 UBE2C (aka UBCH10) poised for ubiquitination of MCC's CDC20
Method: single particle / : Stark H, Schulman BA, Peters JM

EMDB-4028:
Human Anaphase-Promoting Complex/Cyclosome (APC/C) APC15 deletion mutant bound to Mitotic Checkpoint Complex (MCC) and the E2 UBE2C (aka UBCH10) poised for ubiquitination of MCC's CDC20
Method: single particle / : Stark H, Schulman BA, Peters JM

EMDB-3432:
Anaphase-promoting complex/Cyclosome (APC/C)-CDH1-UBE2C (aka UBCH10)-substrate-Ubiquitin (variant)
Method: single particle / : Brown N, VanderLinden R, Watson E, Weissmann F, Ordureau A, Wu KP, Yu S, Mercedi P, Harrison J, Davidson I, Coudevylle R, Lu Y, Dube P, Brunner M, Grace CRR, Miller D, Haselbach D, Jarvis M, Yamaguchi M, Yanishevski D, Petzold G, Sidhu S, Kuhlman B, Kirschner M, Harper JW, Peters JM, Stark H, Schulman BA

EMDB-3433:
Anaphase-promoting complex/Cyclosome (APC/C)-CDH1-UBE2S-Ubiquitin (variant)-substrate
Method: single particle / : Brown N, VanderLinden R, Watson E, Weissmann F, Ordureau A, Wu KP, Yu S, Mercedi P, Harrison J, Davidson I, Coudevylle R, Lu Y, Dube P, Brunner M, Grace CRR, Miller D, Haselbach D, Jarvis M, Yamaguchi M, Yanishevski D, Petzold G, Sidhu S, Kuhlman B, Kirschner M, Harper JW, Peters JM, Stark H, Schulman BA

EMDB-2929:
Mechanism of Ubiquitin Ligation to a Substrate by human Anaphase-Promoting Complex
Method: single particle / : Brown N, VanderLinden R, Watson E, Qiao R, Grace CR, Yamaguchi M, Weissmann F, Frye J, Dube P, Cho SE, Actis M, Rodrigues P, Fujii N, Peters JM, Schulman BA, Stark H

EMDB-2775:
Mechanism of polyubiquitination by human Anaphase Promoting Complex: RING repurposing for ubiquitin chain assembly
Method: single particle / : Brown NG, Watson ER, Weissmann F, Jarvis MA, Vanderlinden R, Grace CRR, Frye JJ, Qiao R, Dube P, Petzold G, Cho SE, Alsharif O, Bao J, Davidson IF, Zheng J, Nourse A, Kurinov I, Peters JM, Stark H, Schulman BA

EMDB-6084:
Anaphase Promoting Complex with bound Ube2S
Method: single particle / : Brown NG, Watson ER, Weissmann F, Jarvis MA, Vanderlinden R, Grace CRR, Frye JJ, Qiao R, Dube P, Petzold G, Cho SE, Alsharif O, Bao J, Davidson IF, Zheng J, Nourse A, Kurinov I, Peters JM, Stark H, Schulman BA

EMDB-2409:
The architecture of yeast DNA polymerase 'zeta'. Electron microscopy reconstruction of the heterotetrameric complex Rev3-Rev7-Pol31-Pol32.
Method: single particle / : Gomez-Llorente Y, Malik R, Jain R, Roy Choudhury J, Johnson RE, Prakash L, Prakash S, Ubarretxena-Belandia I, Aggarwal AK

EMDB-1820:
Yeast anaphase promoting complex (monomer)
Method: single particle / : Buschhorn BA, Petzold G, Galova M, Dube P, Kraft C, Herzog F, Peters JM, Stark H

EMDB-1821:
Human anaphase promoting complex with substrate
Method: single particle / : Buschhorn BA, Petzold G, Galova M, Dube P, Kraft C, Herzog F, Peters JM, Stark H

EMDB-1822:
Yeast Anaphase Promoting Complex (Dimer)
Method: single particle / : Buschhorn BA, Petzold G, Galova M, Dube P, Kraft C, Herzog F, Peters JM, Stark H

EMDB-1591:
Structure of the anaphase promoting complex interacting with a mitotic checkpoint complex
Method: single particle / : Herzog F, Primorac I, Dube P, Lenart P, Sander B, Mechtler K, Stark H, Peters JM

EMDB-1592:
Structure of the anaphase promoting complex interacting with a mitotic checkpoint complex
Method: single particle / : Herzog F, Primorac I, Dube P, Lenart P, Sander B, Mechtler K, Stark H, Peters JM

EMDB-1325:
Composition and three-dimensional EM structure of double affinity-purified, human prespliceosomal A complexes.
Method: single particle / : Behzadnia N, Golas MM, Hartmuth K, Sander B, Kastner B, Deckert J, Dube P, Will CL, Urlaub H, Stark H, Luhrmann R

EMDB-1140:
Localization of the coactivator Cdh1 and the cullin subunit Apc2 in a cryo-electron microscopy model of vertebrate APC/C.
Method: single particle / : Dube P, Herzog F, Peters JM, Stark H

EMDB-1142:
Localization of the coactivator Cdh1 and the cullin subunit Apc2 in a cryo-electron microscopy model of vertebrate APC/C.
Method: single particle / : Dube P, Herzog F, Peters JM, Stark H

EMDB-1139:
Localization of the coactivator Cdh1 and the cullin subunit Apc2 in a cryo-electron microscopy model of vertebrate APC/C.
Method: single particle / : Dube P, Herzog F, Peters JM, Stark H

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