[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 42 items for (author: paulson & jc)

EMDB-25622:
Negative Stain EM reconstruction of ApexGT3 in complex with two copies of PG9 Fab
Method: single particle / : Berndsen ZT

EMDB-25732:
HIV-1 Envelope ApexGT2.2MUT in complex with PCT64.LMCA Fab
Method: single particle / : Berndsen ZT, Ward AB

EMDB-25733:
HIV-1 Envelope ApexGT2 in complex with PCT64.35S Fab and RM20A3 Fab
Method: single particle / : Berndsen ZT, Ward AB

EMDB-25734:
HIV-1 Envelope ApexGT2 in complex with RM20A3 Fab
Method: single particle / : Berndsen ZT, Ward AB

EMDB-25735:
HIV-1 Envelope ApexGT3 in complex with PG9.iGL Fab
Method: single particle / : Berndsen ZT, Ward AB

EMDB-25736:
HIV-1 Envelope ApexGT3.N130 in complex with PG9 Fab
Method: single particle / : Berndsen ZT, Ward AB

EMDB-22108:
HIV-1 Envelope Glycoprotein BG505 SOSIP.664 expressed in HEK293F cells in complex with RM20A3 Fab
Method: single particle / : Berndsen ZT, Ward AB

EMDB-22109:
HIV-1 Envelope Glycoprotein BG505 SOSIP.664 expressed in stable CHO cells in complex with RM20A3 Fab
Method: single particle / : Berndsen ZT, Ward AB

EMDB-22110:
HIV-1 Envelope Glycoprotein BG505 SOSIP.664 expressed in HEK293S cells in complex with RM20A3 Fab
Method: single particle / : Berndsen ZT, Ward AB

EMDB-22111:
HIV-1 Envelope Glycoprotein BG505 SOSIP.664, expressed in HEK293S cells and partially deglycosylated by endoglycosidase H, in complex with RM20A3 Fab
Method: single particle / : Berndsen ZT, Ward AB

EMDB-22112:
HIV-1 Envelope Glycoprotein BG505 SOSIP.664, expressed in HEK293S cells and deglycosylated by endoglycosidase H, in complex with RM20A3 Fab
Method: single particle / : Berndsen ZT, Ward AB

EMDB-22352:
Structure of SARS-CoV-2 3Q-2P full-length prefusion spike trimer (C3 symmetry)
Method: single particle / : Bangaru S, Turner HL, Ozorowski G, Antanasijevic A, Ward AB

EMDB-22353:
Structure of SARS-CoV-2 3Q-2P full-length prefusion trimer (C1 symmetry)
Method: single particle / : Bangaru S, Turner HL, Ozorowski G, Antanasijevic A, Ward AB

EMDB-22354:
Structure of SARS-CoV-2 3Q-2P full-length dimers of spike trimers
Method: single particle / : Bangaru S, Turner HL, Ozorowski G, Antanasijevic A, Ward AB

EMDB-22355:
Structure of SARS-CoV-2 3Q-2P full-length trimer of spike trimers
Method: single particle / : Bangaru S, Turner HL, Ozorowski G, Antanasijevic A, Ward AB

EMDB-22356:
Structure of SARS-CoV-2 3Q full-length prefusion trimer
Method: single particle / : Bangaru S, Turner HL, Ozorowski G, Antanasijevic A, Ward AB

EMDB-20538:
CryoEM map of NA-22 Fab in complex with N9 Shangahi2
Method: single particle / : Ward AB, Turner HL, Zhu X

EMDB-20540:
CryoEM map of NA-73 Fab in complex with N9 Shanghai2
Method: single particle / : Ward AB, Turner HL, Zhu X

EMDB-20541:
CryoEM map of NA-80 Fab in complex with N9 Shangahi2
Method: single particle / : Ward AB, Turner HL, Zhu X

EMDB-20594:
CryoEM-derived model of NA-63 Fab in complex with N9 Shanghai2
Method: single particle / : Ward AB, Turner HL

EMDB-9061:
HA-GCN4pL-sfGFP map in negative stain EM
Method: single particle / : Ward AB, Turner HL

EMDB-9030:
HIV-1 Envelope Glycoprotein Clone B41_delCT in complex with the broadly neutralizing antibody Fab PGT151
Method: single particle / : Berndsen ZT, Ward AB

EMDB-9062:
HIV-1 Envelope Glycoprotein Clone BG505 delCT N332T in complex with broadly neutralizing antibody Fab PGT151
Method: single particle / : Berndsen ZT, Ward AB

EMDB-7858:
Ectodomain of full length, wild type HIV-1 glycoprotein clone PC64M18C043 in complex with PGT151 Fab
Method: single particle / : Berndsens ZB, Rantalainen KR, Ward AB

EMDB-7859:
Full Length HIV-1 Envelope Glycoprotein clone PC64M18C043 in complex with PGT151 Fab and PCT64-35S Fab
Method: single particle / : Berndsen ZT, Rantalainen K, Ward AB

EMDB-7860:
HIV-1 Envelope Glycoprotein clone PC64M18C043.SOSIP.664 complex with PGT151 Fab
Method: single particle / : Berndsens ZB, Rantalainen KR, Ward AB

EMDB-7861:
Full length HIV-1 Envelope Glycoprotein clone PC64M4C054 in complex with PGT151 Fab and PCT64-13C Fab
Method: single particle / : Berndsen ZT, Rantalainen K, Ward AB

EMDB-7862:
HIV-1 Envelope Glycoprotein clone PC64M4C054.SOSIP.664 in complex with PCT64-13F Fab
Method: single particle / : Berndsen ZT, Rantalainen K, Ward AB

EMDB-7863:
HIV-1 Envelope Glycoprotein clone PC64M4C054.SOSIP.664 in complex with PCT64_13C Fab
Method: single particle / : Berndsens ZB, Rantalainen KR, Ward AB

EMDB-7864:
HIV-1 Envelope Glycoprotein clone PC64M4C054.SOSIP.664.N130A in complex with PCT64_13C Fab
Method: single particle / : Berndsen ZT, Rantalainen K, Ward AB

EMDB-7865:
HIV-1 Envelope Glycoprotein clone PC64M4C054.SOSIP in complex with PCT64-35S Fab
Method: single particle / : Berndsens ZB, Rantalainen KR, Ward AB

EMDB-7866:
HIV-1 Envelope Glycoprotein clone PC64M4C054.SOSIP.664.N130A in complex with PCT64_35S Fab
Method: single particle / : Berndsens ZB, Rantalainen KR, Ward AB

EMDB-8643:
BG505 SOSIP.664 trimer in complex with broadly neutralizing HIV antibodies 3BNC117 and PGT145
Method: single particle / : Lee JH, Nieusma T, Ward AB

EMDB-8644:
BG505 SOSIP.664 trimer in complex with broadly neutralizing HIV antibody 3BNC117
Method: single particle / : Lee JH, Ward AB

EMDB-2753:
PGT124 in complex with BG505 SOSIP.664 Env trimer
Method: single particle / : Garces F, Sok D, Kong L, McBride R, Kim HJ, Saye-Francisco KF, Julien JP, Hua Y, Cupo A, Moore JP, Ward AB, Paulson JC, Burton DR, Wilson IA

EMDB-5918:
Negative stain reconstruction of PGT151 Fab in complex with BG505 Env with transmembrane region
Method: single particle / : Lee JH, Blattner C, Wilson IA, Ward AB

EMDB-5919:
Negative stain reconstruction of PGT151 Fab in complex with JR-FL Env with transmembrane region
Method: single particle / : Lee JH, Blattner C, Wilson IA, Ward AB

EMDB-5920:
Negative stain reconstruction of PGT151 Fab in complex with cleaved IAVI C22 Env trimer containing the transmembrane region
Method: single particle / : Lee JH, Blattner C, Wilson IA, Ward AB

EMDB-5921:
Negative stain reconstruction of PGT151 Fab in complex with the soluble Env trimer BG505 SOSIP
Method: single particle / : Lee JH, Blattner C, Wilson IA, Ward AB

EMDB-5624:
Broadly Neutralizing Antibody PGT121 Allosterically Modulates CD4 Binding via Recognition of the HIV-1 gp120 V3 Base and Multiple Surrounding Glycans
Method: single particle / : Khayat R, Lee JH, Julien JP, Wilson IA, Ward AB

EMDB-2331:
Negative stain reconstruction of BG505 SOSIP gp140 HIV-1 trimer in complex with PGT135 Fab
Method: single particle / : Lee JH, Kong L, Murin CD, Cupo A, Moore JP, Wilson IA, Ward AB

EMDB-1970:
Negative stained image reconstruction of HIV spike protein in complex with PGT128 Fab at 14 Angstrom resolution
Method: single particle / : Khayat R, Pejchal R, Julien JP, Wilson IA

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more