[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 35 items for (author: newman & aj)

EMDB-27703:
Structure of RBD directed antibody DH1047 in complex with SARS-CoV-2 spike: Local refinement of RBD-Fab interace
Method: single particle / : May AJ, Manne K, Acharya P

EMDB-15971:
SARS-CoV-2 Delta-RBD complexed with Fabs BA.2-36, BA.2-23, EY6A and COVOX-45
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

PDB-8bcz:
SARS-CoV-2 Delta-RBD complexed with Fabs BA.2-36, BA.2-23, EY6A and COVOX-45
Method: single particle / : Duyvesteyn HME, Ren J, Stuart DI

EMDB-11997:
Structure of a nanoparticle for a COVID-19 vaccine candidate
Method: single particle / : Duyvesteyn HME, Stuart DI

PDB-7b3y:
Structure of a nanoparticle for a COVID-19 vaccine candidate
Method: single particle / : Duyvesteyn HME, Stuart DI

EMDB-4526:
Human post-catalytic spliceosome (P complex) stalled with DHX8 S717A mutant, overall map
Method: single particle / : Fica SM, Oubridge C, Wilkinson ME, Newman AJ, Nagai KN

EMDB-4527:
Human post-catalytic spliceosome (P complex) stalled with DHX8 K594A mutant, focused refinement on core
Method: single particle / : Fica SM, Oubridge C, Wilkinson ME, Newman AJ, Nagai K

EMDB-4528:
Human post-catalytic spliceosome (P complex) stalled with DHX8 S717A mutant, focused refinement on core
Method: single particle / : Fica SM, Oubridge C, Wilkinson ME, Newman AJ, Nagai KN

EMDB-4529:
Human post-catalytic spliceosome (P complex), focused refinement on Aquarius and SYF1
Method: single particle / : Fica SM, Oubridge C, Wilkinson ME, Newman AJ, Nagai KN

EMDB-4530:
Human post-catalytic spliceosome (P complex), focused refinement on Brr2
Method: single particle / : Fica SM, Oubridge C, Wilkinson ME, Newman AJ, Nagai KN

EMDB-4532:
Human post-catalytic spliceosome (P complex), focused refinement on DHX8
Method: single particle / : Fica SM, Oubridge C, Wilkinson ME, Newman AJ, Nagai KN

EMDB-4533:
Human post-catalytic spliceosome (P complex), focused refinement on Prp19
Method: single particle / : Fica SM, Oubridge C, Wilkinson ME, Newman AJ, Nagai KN

EMDB-4534:
Human post-catalytic spliceosome (P complex), focused refinement on U2 snRNP
Method: single particle / : Fica SM, Oubridge C, Wilkinson ME, Newman AJ, Nagai KN

EMDB-4535:
Human post-catalytic spliceosome (P complex), focused refinement on U5 Sm
Method: single particle / : Fica SM, Oubridge C, Wilkinson ME, Newman AJ, Nagai KN

EMDB-4525:
Human post-catalytic spliceosome (P complex) stalled with DHX8 K594A mutant, overall map
Method: single particle / : Fica SM, Oubridge C, Wilkinson ME, Newman AJ, Nagai K

EMDB-3979:
Post-catalytic P complex spliceosome with 3' splice site docked
Method: single particle / : Wilkinson ME, Fica SM, Galej WP, Norman CM, Newman AJ, Nagai K

EMDB-3980:
Post-catalytic P complex spliceosome with 3' splice site undocked
Method: single particle / : Wilkinson ME, Fica SM, Galej WP, Norman CM, Newman AJ, Nagai K

EMDB-3539:
Structure of a spliceosome remodeled for exon ligation
Method: single particle / : Fica SM, Oubridge C, Galej WP, Wilkinson ME, Newman AJ, Bai XC, Nagai K

EMDB-3541:
Structure of a spliceosome remodeled for exon ligation
Method: single particle / : Fica SM, Oubridge C, Galej WP, Wilkinson ME, Newman AJ, Bai XC, Nagai K

EMDB-3542:
Structure of a spliceosome remodeled for exon ligation
Method: single particle / : Fica SM, Oubridge C, Galej WP, Wilkinson ME, Newman AJ, Bai XC, Nagai K

EMDB-4057:
Structure of the yeast spliceosome immediately after branching. 3D class containing helicase module.
Method: single particle / : Galej WP, Wilkinson MF, Fica SM, Oubridge C, Newman AJ, Nagai K

EMDB-4055:
Overall map of the yeast spliceosome immediately after branching
Method: single particle / : Galej WP, Wilkinson MF, Fica SM, Oubridge C, Newman AJ, Nagai K

EMDB-4056:
Structure of the yeast spliceosome immediately after branching. 3D class containing Prp19 module.
Method: single particle / : Galej WP, Wilkinson MF, Fica SM, Oubridge C, Newman AJ, Nagai K

EMDB-4058:
Structure of the yeast spliceosome immediately after branching. Core without WD40 domain.
Method: single particle / : Galej WP, Wilkinson MF, Fica SM, Oubridge C, Newman AJ, Nagai K

EMDB-4059:
Structure of the yeast spliceosome immediately after branching. Core with WD40 domain.
Method: single particle / : Galej WP, Wilkinson MF, Fica SM, Oubridge C, Newman AJ, Nagai K

EMDB-8006:
The open state of the yeast U4/U6.U5 tri-snRNP at 4.2 Angstrom
Method: single particle / : Nguyen THD, Galej WP, Bai XC, Oubridge C, Newman AJ, Scheres SHW, Nagai K

EMDB-8007:
The closed state of the yeast spliceosomal U4/U6.U5 tri-snRNP at 4.3 Angstrom
Method: single particle / : Nguyen THD, Galej WP, Bai XC, Oubridge C, Newman AJ, Scheres SHW, Nagai K

EMDB-8008:
Combined Body and arm regions of the yeast spliceosomal U4/U6.U5 tri-snRNP by masked classification and refinement-Class 1
Method: single particle / : Nguyen THD, Galej WP, Bai XC, Oubridge C, Newman AJ, Scheres SHW, Nagai K

EMDB-8009:
Combined Body and arm regions of the yeast spliceosomal U4/U6.U5 tri-snRNP by masked classification and refinement-Class 2
Method: single particle / : Nguyen THD, Galej WP, Bai XC, Oubridge C, Newman AJ, Scheres SHW, Nagai K

EMDB-8010:
Combined Body and arm regions of the yeast spliceosomal U4/U6.U5 tri-snRNP by masked classification and refinement-Class 3
Method: single particle / : Nguyen THD, Galej WP, Bai XC, Oubridge C, Newman AJ, Scheres SHW, Nagai K

EMDB-8011:
Foot region of the yeast spliceosomal U4/U6.U5 tri-snRNP
Method: single particle / : Nguyen THD, Galej WP, Bai XC, Oubridge C, Scheres SHW, Newman AJ, Nagai K

EMDB-8012:
The overall structure of the yeast spliceosomal U4/U6.U5 tri-snRNP at 3.7 Angstrom
Method: single particle / : Nguyen THD, Galej WP, Bai XC, Oubridge C, Scheres SHW, Newman AJ, Nagai K

EMDB-8013:
Head region of the yeast spliceosomal U4/U6.U5 tri-snRNP
Method: single particle / : Nguyen THD, Galej WP, Bai XC, Oubridge C, Scheres SHW, Newman AJ, Nagai K

EMDB-8014:
Body region of the U4/U6.U5 tri-snRNP
Method: single particle / : Nguyen THD, Galej WP, Oubridge C, Bai XC, Newman A, Scheres S, Nagai K

EMDB-2966:
EM structure of the yeast spliceosomal U4/U6.U5 tri-snRNP
Method: single particle / : Nguyen THD, Galej WP, Bai XC, Savva CG, Newman AJ, Scheres SHW, Nagai K

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more