[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 584 items for (author: mori & t)

EMDB-17171:
CTE typeI tau filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

EMDB-17173:
CTE typeIII tau filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

EMDB-17174:
CTE typeII tau filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

EMDB-17175:
TMEM106B Fold1-s filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

EMDB-17176:
TMEM106B Fold I-d filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

EMDB-17177:
Ab typeII filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

EMDB-17178:
CTE typeI tau filament from Kii ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

EMDB-17179:
TypeII tau filament from Kii ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

EMDB-17180:
CTE typeIII tau filament
Method: helical / : Tetter S, Qi C, Ryskeldi-Falcon B, Scheres SHW, Goedert M

EMDB-17181:
PHF tau filament from Kii ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

PDB-8ot6:
CTE typeI tau filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

PDB-8ot9:
CTE typeIII tau filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

PDB-8otc:
CTE typeII tau filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

PDB-8otd:
TMEM106B Fold1-s filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

PDB-8ote:
TMEM106B Fold I-d filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

PDB-8otf:
Ab typeII filament from Guam ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

PDB-8otg:
CTE typeI tau filament from Kii ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

PDB-8oth:
TypeII tau filament from Kii ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

PDB-8oti:
CTE typeIII tau filament
Method: helical / : Tetter S, Qi C, Ryskeldi-Falcon B, Scheres SHW, Goedert M

PDB-8otj:
PHF tau filament from Kii ALS/PDC
Method: helical / : Qi C, Yang S, Scheres SHW, Goedert M

EMDB-18320:
E. coli ApdP-stalled ribosomal complex
Method: single particle / : Morici M, Wilson DN

EMDB-18332:
B. subtilis ApdA-stalled ribosomal complex
Method: single particle / : Morici M, Wilson DN

EMDB-18340:
ApdP-SRC with P-tRNA only
Method: single particle / : Morici M, Wilson DN

EMDB-18341:
ApdA-SRC with P-tRNA only
Method: single particle / : Morici M, Wilson DN

EMDB-18534:
Structure of SecM-stalled Escherichia coli 70S ribosome
Method: single particle / : Gersteuer F, Morici M, Wilson DN

EMDB-18590:
Cryo-EM map of rotated SecM-stalled Escherichia coli 70S ribosome
Method: single particle / : Gersteuer F, Morici M, Wilson DN

PDB-8qoa:
Structure of SecM-stalled Escherichia coli 70S ribosome
Method: single particle / : Gersteuer F, Morici M, Wilson DN

EMDB-19276:
Cryo-EM of tetrameric collagenase-cleaved Xenopus ZP2-N2N3 (cleaved xZP2-N2N3) (C1)
Method: single particle / : Wiseman B, Nishio S, Jovine L

EMDB-19277:
Cryo-EM of tetrameric collagenase-cleaved Xenopus ZP2-N2N3 (cleaved xZP2-N2N3) (C2)
Method: single particle / : Wiseman B, Nishio S, Jovine L

EMDB-19405:
Tomograms of spoIVB Bacillus subtilis sporangia
Method: electron tomography / : Bauda E, Gallet B, Moravcova J, Effantin G, Chan H, Novacek J, Jouneau PH, Rodrigues CDA, Schoehn G, Moriscot C, Morlot C

EMDB-19411:
Tomograms of cotE Bacillus subtilis sporangia
Method: electron tomography / : Bauda E, Gallet B, Moravcova J, Effantin G, Chan H, Novacek J, Jouneau PH, Rodrigues CDA, Schoehn G, Moriscot C, Morlot C

EMDB-16671:
Cryo-EM structure of the Nup98(298-327) fibril
Method: helical / : Ibanez de Opakua A, Cima-Omori S, Dienemann C, Zweckstetter M

PDB-8ci8:
Cryo-EM structure of the Nup98(298-327) fibril
Method: helical / : Ibanez de Opakua A, Cima-Omori S, Dienemann C, Zweckstetter M

EMDB-35448:
Overlapping tri-nucleosome
Method: single particle / : Nishimura M, Fujii T, Tanaka H, Maehara K, Nozawa K, Takizawa Y, Ohkawa Y, Kurumizaka H

PDB-8ihl:
Overlapping tri-nucleosome
Method: single particle / : Nishimura M, Fujii T, Tanaka H, Maehara K, Nozawa K, Takizawa Y, Ohkawa Y, Kurumizaka H

EMDB-15964:
Subtomogram averaging of SARS-CoV-2 nsp3-4 delta Ubl1-Mac1 obtained from cryo-ET of cryo-FIB milled VeroE6 cells transfected with nsp3-4 delta Ubl1-Mac1
Method: subtomogram averaging / : Chlanda P, Zimmermann L

EMDB-15965:
Subtomogram average of SARS-CoV-2 nsp3-4 delate Ubl1-Ubl2 obtained from cryo-ET of cryo-FIB milled VeroE6 cells transfected with nsp3-4 delta Ubl1-Ubl2
Method: subtomogram averaging / : Chlanda P, Zimmermann L

EMDB-40969:
Uncrosslinked nNOS-CaM oxygenase homodimer
Method: single particle / : Lee K, Pospiech TH, Southworth D

EMDB-40970:
DSBU crosslinked nNOS-CaM oxygenase homodimer
Method: single particle / : Lee K, Pospiech TH, Southworth D

PDB-8t1j:
Uncrosslinked nNOS-CaM oxygenase homodimer
Method: single particle / : Lee K, Pospiech TH, Southworth D

PDB-8t1k:
DSBU crosslinked nNOS-CaM oxygenase homodimer
Method: single particle / : Lee K, Pospiech TH, Southworth D

EMDB-15963:
Subtomogram average SARS-CoV-2 nsp3-4 from cryo-ET of VeroE6 expressing nsp3-4 (filtered to 20A resolution).
Method: subtomogram averaging / : Chlanda P, Zimmermann L

EMDB-34742:
SARS-CoV-2 spike in complex with neutralizing antibody NIV-11 focused on RBD and NIV-11 interface
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y

PDB-8hgl:
SARS-CoV-2 spike in complex with neutralizing antibody NIV-11
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y

PDB-8hgm:
Structure of SARS-CoV-2 spike RBD in complex with neutralizing antibody NIV-11
Method: single particle / : Moriyama S, Anraku Y, Muranishi S, Adachi Y, Kuroda D, Higuchi Y, Kotaki R, Tonouchi K, Yumoto K, Suzuki T, Kita S, Fukuhara H, Kuroda Y, Yamamoto T, Onodera T, Fukushi S, Maeda K, Nakamura-Uchiyama F, Hashiguchi T, Hoshino A, Maenaka K, Takahashi Y

EMDB-15925:
Cryo-electron tomogram acquired on cryo-lamella of VeroE6 cells transfected with SARS-CoV-2 HA-nsp3-4-V5, plunge frozen at 16 hpt
Method: electron tomography / : Zimmermann L, Chlanda P

EMDB-15926:
Cryo-electron tomogram of VeroE6 cells transfected with HA-nsp3-deltaUbl1-Ubl2-nsp4-V5, plunge frozen at 16 hpt
Method: electron tomography / : Zimmermann L, Chlanda P

EMDB-15927:
Cryo-electron tomogram of VeroE6 cells transfected with HA-nsp3-deltaUbl1-Mac1-nsp4-V5. Cells were plunge-frozen at 16h post-transfection and subjected to cryo-FIB milling.
Method: electron tomography / : Chlanda P, Zimmermann L

EMDB-15928:
Cryo-electron tomogram of VeroE6 cells transfected with HA-GG>AA-nsp4-V5, plunge-frozen at 16 hpt and subjected to cryo-FIB milling.
Method: electron tomography / : Chlanda P, Zimmermann L

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more