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Showing all 24 items for (author: mitra & ak)

EMDB-4800:
Cryo-EM structure of the anti-feeding prophage (AFP) baseplate in extended state, 3-fold symmetrised
Method: single particle / : Desfosses A

EMDB-4802:
Cryo-EM structure of the anti-feeding prophage (AFP) helical sheath-tube complex in extended state
Method: helical / : Desfosses A

EMDB-4859:
Cryo-EM structure of the anti-feeding prophage (AFP) sheath-tube in contracted state, C6 symmetrized
Method: single particle / : Desfosses A

EMDB-4871:
Cryo-EM structure of the anti-feeding prophage (AFP) needle from signal-subtracted particles
Method: single particle / : Desfosses A

EMDB-4876:
Cryo-EM structure of the anti-feeding prophage (AFP) baseplate in contracted state
Method: single particle / : Desfosses A

EMDB-4782:
Cryo-EM structure of the anti-feeding prophage (AFP) baseplate, 6-fold symmetrised
Method: single particle / : Desfosses A

EMDB-4783:
Composite map of an entire contractile injection device : the anti-feeding prophage (AFP)
Method: single particle / : Desfosses A

EMDB-4784:
Cryo-EM structure of the anti-feeding prophage cap (AFP tube terminating cap)
Method: single particle / : Desfosses A

EMDB-4801:
Cryo-EM structure of the anti-feeding prophage cap (AFP tube terminating cap), ending with Afp3
Method: single particle / : Desfosses A

EMDB-4803:
Cryo-EM structure of the anti-feeding prophage (AFP) helical sheath in contracted state
Method: helical / : Desfosses A

EMDB-3814:
TORC1 Organised in Inhibited Domains (TOROIDs) regulate TORC1 activity
Method: helical / : Prouteau M, Desfosses A, Sieben C, Bourgoint C, Mozaffri NL, Demurtas D, Mitra AK, Guichard P, Manley S, Loewith R

EMDB-3414:
Structures of human peroxiredoxin 3 suggest self-chaperoning assembly that maintains catalytic state
Method: helical / : Yewdall AN, Venugopal HP, Desfosses A, Abrishami V, Yosaatmadja Y, Hampton MB, Gerrard JA, Goldstone D, Mitra AK, Mazdak Radjainia M

EMDB-3233:
Volta phase plate cryo-EM of the small protein complex Prx3
Method: single particle / : Khoshouei M, Radjainia M, Phillips AJ, Gerrard JA, Mitra AK, Plitzko JM, Baumeister W, Danev R

EMDB-6309:
Cryo-EM structure of human peroxiredoxin-3 filament reveals the assembly of a putative chaperone
Method: single particle / : Radjainia M, Venugopal HP, Desfosses A, Phillips AJ, Yewdall NA, Hampton MB, Gerrard JA, Mitra AK

PDB-4v4v:
Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056
Method: single particle / : Mitra K, Frank J

PDB-4v4w:
Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143
Method: single particle / : Mitra K, Frank J

EMDB-2419:
3-dimensional structure of the toxin-delivery particle antifeeding prophage of Serratia entomophila
Method: single particle / : Heymann JB, Bartho JD, Rybakova D, Venugopal HP, Winkler DC, Sen A, Hurst MRH, Mitra AK

EMDB-2423:
3-dimensional structure of the toxin-delivery particle antifeeding prophage of Serratia entomophila
Method: single particle / : Heymann JB, Bartho JD, Rybakova D, Venugopal HP, Winkler DC, Sen A, Hurst MRH, Mitra AK

EMDB-5215:
Anthrax toxin PA63 in complex with 1G3
Method: single particle / : Radjainia M, Hyun J, Leysath CE, Leppla SH, Mitra AK

PDB-2x8q:
Cryo-EM 3D model of the icosahedral particle composed of Rous sarcoma virus capsid protein pentamers
Method: single particle / : K Hyun J, Radjainia M, Kingston RL, Mitra AK

EMDB-1710:
Cryo-EM 3D model of the icosahedral particle composed of Rous sarcoma virus capsid protein pentamers
Method: single particle / : Hyun JK, Radjainia M, Kingston RL, Mitra AK

EMDB-1143:
Structure of the E. coli protein-conducting channel bound to a translating ribosome.
Method: single particle / : Mitra K, Schaffitzel C, Shaikh T, Tama F, Jenni S, Brooks III CL, Ban N, Frank J

PDB-2akh:
Normal mode-based flexible fitted coordinates of a non-translocating SecYEG protein-conducting channel into the cryo-EM map of a SecYEG-nascent chain-70S ribosome complex from E. coli
Method: single particle / : Mitra KM, Schaffitzel C, Shaikh T, Tama F, Jenni S, Brooks III CL, Ban N, Frank J

PDB-2aki:
Normal mode-based flexible fitted coordinates of a translocating SecYEG protein-conducting channel into the cryo-EM map of a SecYEG-nascent chain-70S ribosome complex from E. coli
Method: single particle / : Mitra K, Schaffitzel C, Shaikh T, Tama F, Jenni S, Brooks III CL, Ban N, Frank J

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Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

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Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

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Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

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Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

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