[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 30 items for (author: mikhail & m & shneider)

EMDB-20526:
CryoEM Structure of Pyocin R2 - precontracted - trunk
Method: helical / : Ge P, Avaylon J

EMDB-20643:
CryoEM Structure of Pyocin R2 - precontracted - baseplate
Method: single particle / : Ge P, Avaylon J

EMDB-20644:
CryoEM Structure of Pyocin R2 - precontracted - collar
Method: single particle / : Ge P, Avaylon J

EMDB-20646:
CryoEM Structure of Pyocin R2 - precontracted - hub
Method: single particle / : Ge P, Avaylon J

EMDB-20647:
CryoEM Structure of Pyocin R2 - postcontracted - collar
Method: single particle / : Ge P, Avaylon J

EMDB-20648:
CryoEM Structure of Pyocin R2 - postcontracted - baseplate
Method: single particle / : Ge P, Avaylon J

PDB-6pyt:
CryoEM Structure of Pyocin R2 - precontracted - trunk
Method: helical / : Ge P, Avaylon J, Scholl D, Shneider MM, Browning C, Buth SA, Plattner M, Ding K, Leiman PG, Miller JF, Zhou ZH

PDB-6u5b:
CryoEM Structure of Pyocin R2 - precontracted - baseplate
Method: single particle / : Ge P, Avaylon J, Scholl D, Shneider MM, Browning C, Buth SA, Plattner M, Ding K, Leiman PG, Miller JF, Zhou ZH

PDB-6u5f:
CryoEM Structure of Pyocin R2 - precontracted - collar
Method: single particle / : Ge P, Avaylon J, Scholl D, Shneider MM, Browning C, Buth SA, Plattner M, Ding K, Leiman PG, Miller JF, Zhou ZH

PDB-6u5h:
CryoEM Structure of Pyocin R2 - precontracted - hub
Method: single particle / : Ge P, Avaylon J, Scholl D, Shneider MM, Browning C, Buth SA, Plattner M, Ding K, Leiman PG, Miller JF, Zhou ZH

PDB-6u5j:
CryoEM Structure of Pyocin R2 - postcontracted - collar
Method: single particle / : Ge P, Avaylon J, Scholl D, Shneider MM, Browning C, Buth SA, Plattner M, Ding K, Leiman PG, Miller JF, Zhou ZH

PDB-6u5k:
CryoEM Structure of Pyocin R2 - postcontracted - baseplate
Method: single particle / : Ge P, Avaylon J, Scholl D, Shneider MM, Browning C, Buth SA, Plattner M, Ding K, Leiman PG, Miller JF, Zhou ZH

EMDB-7559:
Bacteriophage A511 baseplate in post-host attachment state (urea-induced)
Method: single particle / : Guerrero-Ferreira R

EMDB-7560:
Bacteriophage A511 baseplate in pre-host attachment state
Method: single particle / : Guerrero-Ferreira R

EMDB-7561:
Bacteriophage A511 baseplate in post-host attachment state
Method: single particle / : Guerrero-Ferreira R

EMDB-3374:
Cryo-electron microscopy structure of the hexagonal pre-attachment T4 baseplate-tail tube complex
Method: single particle / : Taylor NMI, Guerrero-Ferreira RC, Goldie KN, Stahlberg H, Leiman PG

EMDB-3392:
Cryo-electron microscopy structure of the hexagonal pre-attachment T4 baseplate-tail tube complex: locally masked refinement of the inner baseplate
Method: single particle / : Taylor NMI, Guerrero-Ferreira RC, Goldie KN, Stahlberg H, Leiman PG

EMDB-3393:
Cryo-electron microscopy structure of the hexagonal pre-attachment T4 baseplate-tail tube complex: locally masked refinement of the intermediate baseplate
Method: single particle / : Taylor NMI, Guerrero-Ferreira RC, Goldie KN, Stahlberg H, Leiman PG

EMDB-3394:
Cryo-electron microscopy structure of the hexagonal pre-attachment T4 baseplate-tail tube complex: locally masked refinement of the upper peripheral baseplate
Method: single particle / : Taylor NMI, Guerrero-Ferreira RC, Goldie KN, Stahlberg H, Leiman PG

EMDB-3395:
Cryo-electron microscopy structure of the hexagonal pre-attachment T4 baseplate-tail tube complex: locally masked refinement of the lower peripheral baseplate
Method: single particle / : Taylor NMI, Guerrero-Ferreira RC, Goldie KN, Stahlberg H, Leiman PG

EMDB-3396:
Cryo-electron microscopy structure of the star-shaped, hubless post-attachment T4 baseplate
Method: single particle / : Taylor NMI, Guerrero-Ferreira RC, Goldie KN, Stahlberg H, Leiman PG

EMDB-3397:
Cryo-electron microscopy structure of the hexagonal pre-attachment T4 baseplate-tail tube complex: locally masked refinement of the tail tube
Method: single particle / : Taylor NMI, Guerrero-Ferreira RC, Goldie KN, Stahlberg H, Leiman PG

PDB-5iv5:
Cryo-electron microscopy structure of the hexagonal pre-attachment T4 baseplate-tail tube complex
Method: single particle / : Taylor NMI, Guerrero-Ferreira RC, Goldie KN, Stahlberg H, Leiman PG

PDB-5iv7:
Cryo-electron microscopy structure of the star-shaped, hubless post-attachment T4 baseplate
Method: single particle / : Taylor NMI, Guerrero-Ferreira RC, Goldie KN, Stahlberg H, Leiman PG

PDB-3h3w:
Fitting of the gp6 crystal structure into 3D cryo-EM reconstruction of bacteriophage T4 dome-shaped baseplate
Method: single particle / : Aksyuk AA, Leiman PG, Shneider MM, Mesyanzhinov VV, Rossmann MG

PDB-3h3y:
Fitting of the gp6 crystal structure into 3D cryo-EM reconstruction of bacteriophage T4 star-shaped baseplate
Method: single particle / : Aksyuk AA, Leiman PG, Shneider MM, Mesyanzhinov VV, Rossmann MG

PDB-3foh:
Fitting of gp18M crystal structure into 3D cryo-EM reconstruction of bacteriophage T4 extended tail
Method: single particle / : Aksyuk AA, Leiman PG, Kurochkina LP, Shneider MM, Kostyuchenko VA, Mesyanzhinov VV, Rossmann MG

PDB-3foi:
Fitting of gp18M crystal structure into 3D cryo-EM reconstruction of bacteriophage T4 contracted tail
Method: single particle / : Aksyuk AA, Leiman PG, Kurochkina LP, Shneider MM, Kostyuchenko VA, Mesyanzhinov VV, Rossmann MG

PDB-2fl8:
Fitting of the gp10 trimer structure into the cryoEM map of the bacteriophage T4 baseplate in the hexagonal conformation.
Method: single particle / : Leiman PG, Shneider MM, Mesyanzhinov VV, Rossmann MG

PDB-2fl9:
Evolution of bacteriophage tails: Structure of T4 gene product 10
Method: single particle / : Leiman PG, Shneider MM, Mesyanzhinov VV, Rossmann MG

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more