[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 60 items for (author: melero & r)

EMDB-16453:
SARS-CoV-2 Omicron Variant Spike Trimer in complex with three 17T2 Fabs
Method: single particle / : Modrego A, Carlero D, Bueno-Carrasco MT, Santiago C, Carolis C, Arranz R, Blanco J, Magri G

EMDB-16473:
SARS-CoV-2 spike in complex with the 17T2 neutralizing antibody Fab fragment (local refinement of RBD and Fab)
Method: single particle / : Modrego A, Carlero D, Bueno-Carrasco MT, Santiago C, Carolis C, Arranz R, Blanco J, Magri G

PDB-8c89:
SARS-CoV-2 spike in complex with the 17T2 neutralizing antibody Fab fragment (local refinement of RBD and Fab)
Method: single particle / : Modrego A, Carlero D, Bueno-Carrasco MT, Santiago C, Carolis C, Arranz R, Blanco J, Magri G

EMDB-17576:
SARS-CoV-2 S-protein:D614G mutant in 1-up conformation
Method: single particle / : Adhav A, Forcada-Nadal A, Marco-Marin C, Lopez-Redondo ML, Llacer JL

EMDB-17578:
SARS-CoV-2 S protein S:D614G mutant in 3-down with binding site of an entry inhibitor
Method: single particle / : Adhav A, Forcada-Nadal A, Marco-Marin C, Lopez-Redondo ML, Llacer JL

PDB-8p99:
SARS-CoV-2 S-protein:D614G mutant in 1-up conformation
Method: single particle / : Adhav A, Forcada-Nadal A, Marco-Marin C, Lopez-Redondo ML, Llacer JL

PDB-8p9y:
SARS-CoV-2 S protein S:D614G mutant in 3-down with binding site of an entry inhibitor
Method: single particle / : Adhav A, Forcada-Nadal A, Marco-Marin C, Lopez-Redondo ML, Llacer JL

EMDB-23046:
Cryo-EM structure of Mal de Rio Cuarto virus P9-1 viroplasm protein (decamer)
Method: single particle / : Llauger G, Melero R, Monti D, Sycz G, Huck-Iriart C, Cerutti ML, Klinke S, Arranz R, Carazo JM, Goldbaum FA, del Vas M, Otero LH

EMDB-23047:
Cryo-EM structure of Mal de Rio Cuarto virus P9-1 viroplasm protein (dodecamer)
Method: single particle / : Llauger G, Melero R, Monti D, Sycz G, Huck-Iriart C, Cerutti ML, Klinke S, Arranz R, Carazo JM, Goldbaum FA, del Vas M, Otero LH

PDB-7kvc:
Cryo-EM structure of Mal de Rio Cuarto virus P9-1 viroplasm protein (decamer)
Method: single particle / : Llauger G, Melero R, Monti D, Sycz G, Huck-Iriart C, Cerutti ML, Klinke S, Arranz R, Carazo JM, Goldbaum FA, del Vas M, Otero LH

PDB-7kvd:
Cryo-EM structure of Mal de Rio Cuarto virus P9-1 viroplasm protein (dodecamer)
Method: single particle / : Llauger G, Melero R, Monti D, Sycz G, Huck-Iriart C, Cerutti ML, Klinke S, Arranz R, Carazo JM, Goldbaum FA, del Vas M, Otero LH

EMDB-14313:
The SARS-CoV-2 spike in complex with the 2.15 neutralizing nanobody
Method: single particle / : Casasnovas JM, Melero R, Arranz R, Fernandez LA

EMDB-14314:
The SARS-CoV-2 spike in complex with the 1.29 neutralizing nanobody
Method: single particle / : Casasnovas JM, Melero R, Arranz R, Fernandez LA

EMDB-14315:
The SARS-CoV-2 spike in complex with the 1.10 neutralizing nanobody
Method: single particle / : Casasnovas JM, Melero R, Arranz R, Fernandez LA

PDB-7r4i:
The SARS-CoV-2 spike in complex with the 2.15 neutralizing nanobody
Method: single particle / : Casasnovas JM, Melero R, Arranz R, Fernandez LA

PDB-7r4q:
The SARS-CoV-2 spike in complex with the 1.29 neutralizing nanobody
Method: single particle / : Casasnovas JM, Melero R, Arranz R, Fernandez LA

PDB-7r4r:
The SARS-CoV-2 spike in complex with the 1.10 neutralizing nanobody
Method: single particle / : Casasnovas JM, Melero R, Arranz R, Fernandez LA

EMDB-13916:
SARS-CoV-2 S protein S:A222V + S:D614G mutant 1-up
Method: single particle / : Ginex T, Marco-Marin C, Wieczor M, Mata CP, Krieger J, Lopez-Redondo ML, Frances-Gomez C, Ruiz-Rodriguez P, Melero R, Sanchez-Sorzano CO, Martinez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, LLacer JL, Carazo JM

EMDB-13917:
SARS-CoV-2 S protein S:A222V + S:D614G mutant 2-up
Method: single particle / : Ginex T, Marco-Marin C, Wieczor M, Mata CP, Krieger J, Lopez-Redondo ML, Ruiz-Rodriguez P, Melero R, Sanchez-Sorzano CO, Martinez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llacer JL, Carazo JM

EMDB-13918:
SARS-CoV-2 S protein S:A222V + S:D614G mutant 3-down
Method: single particle / : Ginex T, Marco-Marin C, Wieczor M, Mata CP, Krieger J, Lopez-Redondo ML, Ruiz-Rodriguez P, Melero R, Sanchez-Sorzano CO, Martinez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llacer JL, Carazo JM

EMDB-13919:
SARS-CoV-2 S protein S:D614G mutant 1-up
Method: single particle / : Ginex T, Marco-Marin C, Wieczor M, Mata CP, Krieger J, Lopez-Redondo ML, Frances-Gomez C, Ruiz-Rodriguez P, Melero R, Sanchez-Sorzano CO, Martinez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, LLacer JL, Carazo JM

EMDB-13920:
SARS-CoV-2 S protein S:D614G mutant 2-up
Method: single particle / : Ginex T, Marco-Marin C, Wieczor M, Mata CP, Krieger J, Lopez-Redondo ML, Ruiz-Rodriguez P, Melero R, Sanchez-Sorzano CO, Martinez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, Llacer JL, Carazo JM

PDB-7qdg:
SARS-CoV-2 S protein S:A222V + S:D614G mutant 1-up
Method: single particle / : Ginex T, Marco-Marin C, Wieczor M, Mata CP, Krieger J, Lopez-Redondo ML, Frances-Gomez C, Ruiz-Rodriguez P, Melero R, Sanchez-Sorzano CO, Martinez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, LLacer JL, Carazo JM

PDB-7qdh:
SARS-CoV-2 S protein S:D614G mutant 1-up
Method: single particle / : Ginex T, Marco-Marin C, Wieczor M, Mata CP, Krieger J, Lopez-Redondo ML, Frances-Gomez C, Ruiz-Rodriguez P, Melero R, Sanchez-Sorzano CO, Martinez M, Gougeard N, Forcada-Nadal A, Zamora-Caballero S, Gozalbo-Rovira R, Sanz-Frasquet C, Bravo J, Rubio V, Marina A, Geller R, Comas I, Gil C, Coscolla M, Orozco M, LLacer JL, Carazo JM

EMDB-12285:
Platelet integrin from intact cells
Method: subtomogram averaging / : Sorrentino S, Conesa JJ, Cuervo A, Melero R, Martins B, Fernandez-Gimenez E, Isidro-Gomez F, Jimenez de la Morena J, Studt JD, Sorzano COS, Eibauer M, Carazo JM, Medalia O

EMDB-11606:
Cryo-EM map of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis (open conformation)
Method: single particle / : Lazaro M, Melero R, Huet C, Lopez-Alonso JP, Delgado S, Dodu A, Bruch EM, Abriata LA, Alzari PM, Valle M, Lisa MN

EMDB-11612:
Cryo-EM map of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis (close conformation)
Method: single particle / : Lazaro M, Melero R, Huet C, Lopez-Alonso JP, Delgado S, Dodu A, Bruch EM, Abriata LA, Alzari PM, Valle M, Lisa MN

EMDB-11613:
Cryo-EM map of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis (monomer)
Method: single particle / : Lazaro M, Melero R, Huet C, Lopez-Alonso JP, Delgado S, Dodu A, Bruch EM, Abriata LA, Alzari PM, Valle M, Lisa MN

PDB-7a1d:
Cryo-EM map of the large glutamate dehydrogenase composed of 180 kDa subunits from Mycobacterium smegmatis (open conformation)
Method: single particle / : Lazaro M, Melero R, Huet C, Lopez-Alonso JP, Delgado S, Dodu A, Bruch EM, Abriata LA, Alzari PM, Valle M, Lisa MN

EMDB-11831:
BIP18SN. De novo coiled-coil-based bipyramidal protein
Method: single particle / : Lapenta F, Aupic J, Vezzoli M, Strmsek Z, Da Vela S, Svergun DI, Melero R, Carazo JM, Jerala R

EMDB-11328:
SARS-CoV-2 spike in prefusion state
Method: single particle / : Martinez M, Marabini R, Carazo JM

EMDB-11336:
SARS-CoV-2 spike in prefusion state (flexibility analysis, 1-up closed conformation)
Method: single particle / : Martinez M, Marabini R, Carazo JM

EMDB-11337:
SARS-CoV-2 spike in prefusion state (flexibility analysis, 1-up open conformation)
Method: single particle / : Martinez M, Marabini R, Carazo JM

EMDB-11341:
SARS-CoV-2 stabilized spike in prefusion state (1-up conformation)
Method: single particle / : Martinez M, Marabini R, Carazo JM

PDB-6zow:
SARS-CoV-2 spike in prefusion state
Method: single particle / : Martinez M, Marabini R, Carazo JM

PDB-6zp5:
SARS-CoV-2 spike in prefusion state (flexibility analysis, 1-up closed conformation)
Method: single particle / : Martinez M, Marabini R, Carazo JM

PDB-6zp7:
SARS-CoV-2 spike in prefusion state (flexibility analysis, 1-up open conformation)
Method: single particle / : Martinez M, Marabini R, Carazo JM

EMDB-4713:
Negative staining of antibodies cooperative complex formed by human fab7B10 and fab2C1 bound to the N. meningitidis antigen factor H binding protein (fHbp)
Method: single particle / : Peschiera I, Ferlenghi I, Melero R, Liljeroos LJ, Paccagnini E, Giusti F, Carazo JM, Sorzano COS, Scarselli M

EMDB-4714:
Negative staining of antibodies cooperative complex formed by human IgG1 mAb7B10 and mAb2C1 bound to the N. meningitidis antigen factor H binding protein (fHbp)
Method: single particle / : Peschiera I, Ferlenghi I, Melero R, Liljeroos LJ, Paccagnini E, Giusti F, Carazo JM, Sorzano COS, Scarselli M

EMDB-4715:
Negative staining of antibodies cooperative complex formed by human IgG1 mAb1A3 and mAb1A12 bound to the N. meningitidis antigen factor H binding protein (fHbp)
Method: single particle / : Peschiera I, Ferlenghi I, Melero R, Liljeroos LJ, Paccagnini E, Giusti F, Carazo JM, Sorzano COS, Scarselli M

EMDB-0117:
Subtomogram averaging of nucleosome particles decorating chromatin plates from metaphase chromosomes
Method: subtomogram averaging / : Chicano A, Crosas E, Engel BD, Melero R, Oton J, Daban JR

EMDB-0119:
Cryo-electron tomogram of chromatin plates from metaphase chromosomes
Method: electron tomography / : Chicano A, Crosas E, Engel BD, Melero R, Oton J, Daban JR

EMDB-3557:
Centriolar Distal MT doublets in centrosome extracted from o.aries thymocytes
Method: subtomogram averaging / : Busselez J, Chichon FJ, Melero R, Carrascosa JL, Carazo JM

EMDB-3558:
Centriolar Proximal MT triplet in centrosomes extracted from o.aries thymocytes
Method: subtomogram averaging / : Busselez J, Chichon FJ, Melero R, Carrascosa JL, Carazo JM

EMDB-3781:
TET12SN density map (Design of in vivo self-assembling coiled-coil protein origami)
Method: single particle / : Melero R, Carazo JM

EMDB-3788:
PYR16SN density map (Design of in vivo self-assembling coiled-coil protein origami)
Method: single particle / : Melero R, Carazo JM

EMDB-3789:
TRIP18SN density map (Design of in vivo self-assembling coiled-coil protein origami)
Method: single particle / : Melero R, Carazo JM

EMDB-3825:
Three-dimensional cryo-EM density map of paired C2S2M PSII-LHCII supercomplexes from thylakoid membranes of Pisum sativum
Method: single particle / : Pagliano C

EMDB-3405:
Mammalian 80S Ribosomes Associate with a Novel Vesicular Organelle
Method: subtomogram averaging / : Carter SD, Hampton CM, Langlois R, Grassucci RA, Farino ZJ, Morgenstern TM, Rice WJ, Velasco KR, Wigge C, Xu Y, Koller A, Melero R, Mitchell WG, Yi E, Aguilar JI, Levy ES, Greenberg NL, Li W, Courel M, Mahata SK, Freyberg R, Javitch JA, Di Paolo G, Chen EI, Chan RB, Carazo JM, Area-Gomez E, Jensen GJ, Frank J, Freyberg Z

EMDB-8718:
Domain identification of Penicillium Chrysogenum UGGT by labeling the protein with monovalent streptavidin
Method: single particle / : Calles-Garcia D, Yang M, Vargas J, Melero R, Soya N, Menade M, Ito Y, Lukacs G, Kollman J, Kozlov G, Gehring K

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more