[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 50 items for (author: manjuli & r & sharma)

EMDB-29298:
The structure of a hibernating ribosome in the Lyme disease pathogen
Method: single particle / : Sharma MR, Manjari SR, Agrawal EK, Keshavan P, Koripella RK, Majumdar S, Marcinkiewicz AL, Lin YP, Agrawal RK, Banavali NK

EMDB-29304:
The structure of a 50S ribosomal subunit in the Lyme disease pathogen Borreliella burgdorferi
Method: single particle / : Sharma MR, Manjari SR, Agrawal EK, Keshavan P, Koripella RK, Majumdar S, Marcinkiewicz AL, Lin YP, Agrawal RK, Banavali NK

PDB-8fmw:
The structure of a hibernating ribosome in the Lyme disease pathogen
Method: single particle / : Sharma MR, Manjari SR, Agrawal EK, Keshavan P, Koripella RK, Majumdar S, Marcinkiewicz AL, Lin YP, Agrawal RK, Banavali NK

PDB-8fn2:
The structure of a 50S ribosomal subunit in the Lyme disease pathogen Borreliella burgdorferi
Method: single particle / : Sharma MR, Manjari SR, Agrawal EK, Keshavan P, Koripella RK, Majumdar S, Marcinkiewicz AL, Lin YP, Agrawal RK, Banavali NK

EMDB-29397:
Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex
Method: single particle / : Majumdar S, Sharma MR, Manjari SR, Banavali NK, Agrawal RK

PDB-8fr8:
Structure of Mycobacterium smegmatis Rsh bound to a 70S translation initiation complex
Method: single particle / : Majumdar S, Sharma MR, Manjari SR, Banavali NK, Agrawal RK

EMDB-23076:
Mycobacterium smegmatis 70S-MPY complex at high resolution
Method: single particle / : Sharma MR, Koripella RK, Agrawal RK

EMDB-21233:
Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)
Method: single particle / : Sharma MR, Koripella RK

EMDB-21242:
Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)
Method: single particle / : Sharma MR, Koripella RK, Agrawal RK

EMDB-22209:
Structure of bovine 55S mitochondrial ribosome
Method: single particle / : Sharma MR, Koripella RK, Agrawal RK

EMDB-22212:
Structure of the human mitochondrial ribosome-EF-G1 complex (ClassII)
Method: single particle / : Sharma MR, Koripella RK, Agrawal RK

PDB-6vlz:
Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)
Method: single particle / : Sharma MR, Koripella RK, Agrawal RK

PDB-6vmi:
Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)
Method: single particle / : Sharma MR, Koripella RK, Agrawal RK

EMDB-0514:
Structural insights into unique features of the human mitochondrial ribosome recycling
Method: single particle / : Sharma MR, Koripella RK, Agrawal RK

EMDB-0515:
Structural insights into unique features of the human mitochondrial ribosome recycling
Method: single particle / : Sharma MR, Koripella RK, Agrawal RK

PDB-6nu2:
Structural insights into unique features of the human mitochondrial ribosome recycling
Method: single particle / : Sharma MR, Koripella RK, Agrawal RK

PDB-6nu3:
Structural insights into unique features of the human mitochondrial ribosome recycling
Method: single particle / : Sharma MR, Koripella RK, Agrawal RK

EMDB-9358:
Structure of human mitochondrial translation initiation factor 3 bound to the small ribosomal subunit-Class-II
Method: single particle / : Sharma M, Koripella R, Agrawal R

EMDB-9362:
Structure of human mitochondrial translation initiation factor 3 bound to the small ribosomal subunit -Class I
Method: single particle / : Sharma M, Koripella R, Agrawal R

PDB-6neq:
Structure of human mitochondrial translation initiation factor 3 bound to the small ribosomal subunit-Class-II
Method: single particle / : Sharma M, Koripella R, Agrawal R

PDB-6nf8:
Structure of human mitochondrial translation initiation factor 3 bound to the small ribosomal subunit -Class I
Method: single particle / : Sharma M, Koripella R, Agrawal R

EMDB-8937:
Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit
Method: single particle / : Sharma MR, Li Y, Korripella R, Yang Y, Kaushal PS, Lin Q, Wade JT, Gray AG, Derbyshire KM, Agrawal RK, Ojha A

PDB-6dzp:
Cryo-EM Structure of Mycobacterium smegmatis C(minus) 50S ribosomal subunit
Method: single particle / : Sharma MR, Li Y, Korripella R, Yang Y, Kaushal PS, Lin Q, Wade JT, Gray AG, Derbyshire KM, Agrawal RK, Ojha A

EMDB-8932:
Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex
Method: single particle / : Li Y, Sharma MR, Koripella RK, Yang Y, Kaushal PS, Lin Q, Wade JT, Gray TA, Derbyshire KM, Agrawal RK, Ojha AK

PDB-6dzi:
Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex
Method: single particle / : Sharma MR, Li Y, Korripella R, Yang Y, Kaushal PS, Lin Q, Wade JT, Gray AG, Derbyshire KM, Agrawal RK, Ojha A

EMDB-8934:
Cryo-EM Structure of Mycobacterium smegmatis C(minus) 30S ribosomal subunit with MPY
Method: single particle / : Sharma MR, Li Y, Korripella R, Yang Y, Kaushal PS, Lin Q, Wade JT, Gray AG, Derbyshire KM, Agrawal RK, Ojha A

PDB-6dzk:
Cryo-EM Structure of Mycobacterium smegmatis C(minus) 30S ribosomal subunit with MPY
Method: single particle / : Sharma MR, Li Y, Korripella R, Yang Y, Kaushal PS, Lin Q, Wade JT, Gray AG, Derbyshire KM, Agrawal RK, Ojha A

PDB-3jd5:
Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome
Method: single particle / : Kaushal PS, Sharma MR, Booth TM, Haque EM, Tung CS, Sanbonmatsu KY, Spremulli LL, Agrawal RK

EMDB-5805:
Cryo-EM map of the Drosophila 80S Ribosome (control map for 80S-FMRP Complex map)
Method: single particle / : Chen E, Sharma M R, Shi X, Agrawal R K, Joseph S

EMDB-5806:
Cryo-EM map of the Complex between Drosophila 80S Ribosome and FMRP
Method: single particle / : Chen E, Sharma M R, Shi X, Agrawal R K, Joseph S

PDB-4v61:
Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.
Method: single particle / : Sharma MR, Wilson DN, Datta PP, Barat C, Schluenzen F, Fucini P, Agrawal RK

EMDB-5941:
Cryo-EM structure of the small subunit of the mammalian mitochondrial ribosome
Method: single particle / : Kaushal PS, Sharma MR, Booth TM, Haque E, Tung C, Sanbonmatsu K, Spremulli L, Agrawal RK

EMDB-5125:
PSRP1 is not a bona fide ribosomal protein, but a stress response factor
Method: single particle / : Sharma MR, Donhofer A, Barat C, Datta P, Fucini P, Wilson DN, Agrawal RK

EMDB-5126:
In vivo 70S E.coli ribosome with PSRP1
Method: single particle / : Sharma MR, Donhofer A, Barat C, Datta P, Fucini P, Wilson DN, Agrawal RK

EMDB-1417:
Cryo-EM study of the Spinach chloroplast ribosome reveals the structural and functional roles of plastid-specific ribosomal proteins
Method: single particle / : Sharma MR, Wilson DN, Datta PP, Barat C, Schluenzen F, Fucini P, Agrawal RK

PDB-3iy8:
Leishmania tarentolae Mitonchondrial Ribosome small subunit
Method: single particle / : Sharma MR, Booth TM, Simpson L, Maslov DA, Agrawal RK

PDB-3iy9:
Leishmania Tarentolae Mitochondrial Large Ribosomal Subunit Model
Method: single particle / : Sharma MR, Booth TM, Simpson L, Maslov DA, Agrawal RK

EMDB-5113:
The Structure of Leishmania Mitochondrial Ribosome with Minimal RNA.
Method: single particle / : Sharma MR, Booth TM, Simpson L, Maslov DA, Agrawal RK

PDB-2r1c:
Coordinates of the thermus thermophilus ribosome binding factor A (RbfA) homology model as fitted into the CRYO-EM map of a 30S-RBFA complex
Method: single particle / : Datta PP, Wilson DN, Kawazoe M, Swami NK, Kaminishi T, Sharma MR, Booth TM, Takemoto C, Fucini P, Yokoyama S, Agrawal RK

PDB-2r1g:
Coordinates of the thermus thermophilus 30S components neighboring RbfA as obtained by fitting into the CRYO-EM map of A 30S-RBFA complex
Method: single particle / : Datta PP, Wilson DN, Kawazoe M, Swami NK, Kaminishi T, Sharma MR, Booth TM, Takemoto C, Fucini P, Yokoyama S, Agrawal RK

EMDB-1369:
Progression of the ribosome recycling factor through the ribosome dissociates the two ribosomal subunits.
Method: single particle / : Barat C, Datta PP, Raj VS, Sharma MR, Kaji H, Kaji A, Agrawal RK

EMDB-1370:
Progression of the ribosome recycling factor through the ribosome dissociates the two ribosomal subunits.
Method: single particle / : Barat C, Datta PP, Raj VS, Sharma MR, Kaji H, Kaji A, Agrawal RK

EMDB-1413:
Structural aspects of RbfA action during small ribosomal subunit assembly.
Method: single particle / : Datta PP, Wilson DN, Kawazoe M, Swami NK, Kaminishi T, Sharma MR, Booth TM, Takemoto C, Fucini P, Yokoyama S, Agrawal RK

PDB-2ftc:
Structural Model for the Large Subunit of the Mammalian Mitochondrial Ribosome
Method: single particle / : Mears JA, Sharma MR, Gutell RR, Richardson PE, Agrawal RK, Harvey SC

PDB-2bcw:
Coordinates of the N-terminal domain of ribosomal protein L11,C-terminal domain of ribosomal protein L7/L12 and a portion of the G' domain of elongation factor G, as fitted into cryo-em map of an Escherichia coli 70S*EF-G*GDP*fusidic acid complex
Method: single particle / : Datta PP, Sharma MR, Qi L, Frank J, Agrawal RK

PDB-1x18:
Contact sites of ERA GTPase on the THERMUS THERMOPHILUS 30S SUBUNIT
Method: single particle / : Sharma MR, Barat C, Agrawal RK

PDB-1x1l:
Interaction of ERA,a GTPase protein, with the 3'minor domain of the 16S rRNA within the THERMUS THERMOPHILUS 30S subunit.
Method: single particle / : Sharma MR, Barat C, Agrawal RK

EMDB-1077:
Visualization of ribosome-recycling factor on the Escherichia coli 70S ribosome: functional implications.
Method: single particle / : Agrawal RK

PDB-1t1m:
Binding position of ribosome recycling factor (RRF) on the E. coli 70S ribosome
Method: single particle / : Agrawal RK, Sharma MR, Kiel MC, Hirokawa G, Booth TM, Spahn CM, Grassucci RA, Kaji A, Frank J

PDB-1t1o:
Components of the control 70S ribosome to provide reference for the RRF binding site
Method: single particle / : Agrawal RK, Sharma MR, Kiel MC, Hirokawa G, Booth TM, Spahn CM, Grassucci RA, Kaji A, Frank J

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more