[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 96 items for (author: lok & sm)

EMDB-43629:
Cryo-EM structure of phage DEV ejection proteins gp72:gp73
Method: single particle / : Iglesias SM, Cingolani G

EMDB-41649:
P22 Mature Virion tail - C6 Localized Reconstruction
Method: single particle / : Iglesias S, Cingolani G, Feng-Hou C

EMDB-41651:
In situ cryo-EM structure of bacteriophage P22 portal protein: head-to-tail protein complex at 3.0A resolution
Method: single particle / : Iglesias SM, Cingolani G, Feng-Hou C

EMDB-41819:
In situ cryo-EM structure of bacteriophage P22 tailspike protein complex at 3.4A resolution
Method: single particle / : Iglesias SM, Feng-Hou C, Cingolani G

EMDB-41791:
In situ cryo-EM structure of bacteriophage P22 gp1:gp4:gp5:gp10:gp9 N-term complex in conformation 1 at 3.2A resolution
Method: single particle / : Iglesias S, Feng-Hou C, Cingolani G

EMDB-41792:
In situ cryo-EM structure of bacteriophage P22 gp1:gp5:gp4: gp10: gp9 N-term complex in conformation 2 at 3.1A resolution
Method: single particle / : Iglesias S, Feng-Hou C, Cingolani G

EMDB-33650:
SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7
Method: single particle / : Chia WN, Tan CW, Tan AWK, Young B, Starr TN, Lopez E, Fibriansah G, Barr J, Cheng S, Yeoh AYY, Yap WC, Lim BL, Ng TS, Sia WR, Zhu F, Chen S, Zhang J, Greaney AJ, Chen M, Au GG, Paradkar P, Peiris M, Chung AW, Bloom JD, Lye D, Lok SM, Wang LF

EMDB-33651:
SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7 (focused refinement on Fab-RBD interface)
Method: single particle / : Chia WN, Tan CW, Tan AWK, Young B, Starr TN, Lopez E, Fibriansah G, Barr J, Cheng S, Yeoh AYY, Yap WC, Lim BL, Ng TS, Sia WR, Zhu F, Chen S, Zhang J, Greaney AJ, Chen M, Au GG, Paradkar P, Peiris M, Chung AW, Bloom JD, Lye D, Lok SM, Wang LF

EMDB-33718:
ZIKV_Fab_G9E
Method: single particle / : Shu B, Thiam-Seng N, Lok S

EMDB-32839:
CryoEM structure of sNS1 complexed with Fab5E3
Method: single particle / : Shu B, Lok SM

EMDB-32840:
CryoEM structure of a dimer of loose sNS1 tetramer
Method: single particle / : Shu B, Lok SM

EMDB-32841:
CryoEM structure of stable sNS1 tetramer
Method: single particle / : Shu B, Ooi JSG, Lok SM

EMDB-32842:
CryoEM structure of loose sNS1 tetramer
Method: single particle / : Shu B, Lok SM

EMDB-32843:
CryoEM structure of sNS1 hexamer
Method: single particle / : Shu B, Ooi JSG, Lok SM

EMDB-26336:
APE1 bound to a nucleosome core particle with AP-site at SHL-6
Method: single particle / : Weaver TM, Freudenthal BD

EMDB-26337:
Nucleosome core particle with AP-site at SHL-6
Method: single particle / : Freudenthal BD, Weaver TM

EMDB-26338:
nucleosome core particle with AP-site at SHL-6.5
Method: single particle / : Freudenthal BD, Weaver TM

EMDB-26339:
Nucleosome core particle with AP-site at SHL0
Method: single particle / : Freudenthal BD, Weaver TM

PDB-7u50:
APE1 bound to a nucleosome core particle with AP-site at SHL-6
Method: single particle / : Weaver TM, Freudenthal BD

PDB-7u51:
Nucleosome core particle with AP-site at SHL-6
Method: single particle / : Freudenthal BD, Weaver TM

PDB-7u52:
nucleosome core particle with AP-site at SHL-6.5
Method: single particle / : Freudenthal BD, Weaver TM

PDB-7u53:
Nucleosome core particle with AP-site at SHL0
Method: single particle / : Freudenthal BD, Weaver TM

EMDB-31677:
DENV2_NGC_Fab_C10 28degree (1Fab:3E)
Method: single particle / : Shu B, Zhang S, Victor AK, Ng TS, Lok SM

EMDB-31678:
DENV2_NGC_Fab_C10 28degrees (2Fab:3E)
Method: single particle / : Shu B, Zhang S, Victor AK, Ng TS, Lok SM

EMDB-31679:
DENV2_NGC_Fab_C10 28degrees (3Fab:3E)
Method: single particle / : Shu B, Zhang S, Victor AK, Ng TS, Lok SM

EMDB-31680:
DENV2_NGC_Fab_C10 4degrees (3Fab:3E)
Method: single particle / : Shu B, Zhang S, Victor AK, Ng TS, Lok SM

EMDB-31681:
DENV2:F(ab')2-local
Method: single particle / : Shu B, Zhang S, Victor AK, Ng TS, Lok SM

EMDB-31682:
DENV2_NGC_F(ab')2
Method: single particle / : Shu B, Zhang S, Victor AK, Ng TS, Lok S

EMDB-13266:
Cryo EM structure of System XC- in complex with glutamate
Method: single particle / : Parker JL, Deme JC, Lea SM, Newstead S

EMDB-13267:
Cryo EM structure of System XC-
Method: single particle / : Parker JL, Deme JC, Lea SM, Newstead S

EMDB-30883:
Cryo-EM structure of Dengue virus serotype 1 strain WestPac 74 in complex with human antibody 1C19 Fab at 37 deg C (Class 1 particle)
Method: single particle / : Fibriansah G, Ng TS

EMDB-30884:
Cryo-EM structure of Dengue virus serotype 1 strain WestPac 74 in complex with human antibody 1C19 Fab at 37 deg C (Class 2 particle)
Method: single particle / : Fibriansah G, Ng TS

EMDB-30885:
Cryo-EM map of Dengue virus serotype 2 strain PVP94/07 in complex with human antibody 1C19 Fab at 37 deg C
Method: single particle / : Fibriansah G, Ng TS, Kostyuchenko VA, Shi J, Lok SM

EMDB-30886:
Cryo-EM map of Dengue virus serotype 2 strain PVP94/07 in complex with human antibody 1C19 Fab at 40 deg C
Method: single particle / : Fibriansah G, Ng TS, Kostyuchenko VA, Shi J, Lok SM

EMDB-30476:
Cryo-EM structure of Chikungunya virus in complex with Fab fragments of mAb CHK-124
Method: single particle / : Zhou QF, Fox JM, Earnest JT, Ng TS, Kim AS, Fibriansah G, Kostyuchenko VA, Shu B, Diamond MS, Lok SM

EMDB-30477:
Cryo-EM structure of Chikungunya virus in complex with Fab fragments of mAb CHK-263
Method: single particle / : Zhou QF, Fox JM, Earnest JT, Ng TS, Kim AS, Fibriansah G, Kostyuchenko VA, Shu B, Diamond MS, Lok SM

EMDB-30478:
Cryo-EM structure of Chikungunya virus in complex with mAb CHK-263 IgG
Method: single particle / : Zhou QF, Fox JM, Earnest JT, Ng TS, Kim AS, Fibriansah G, Kostyuchenko VA, Shu B, Diamond MS, Lok SM

EMDB-30479:
Cryo-EM structure of Chikungunya virus in complex with Fab fragments of mAb CHK-263 (subregion around icosahedral 5-fold vertex)
Method: single particle / : Zhou QF, Fox JM, Earnest JT, Ng TS, Kim AS, Fibriansah G, Kostyuchenko VA, Shu B, Diamond MS, Lok SM

EMDB-30480:
Cryo-EM structure of Chikungunya virus in complex with mAb CHK-263 IgG (subregion around icosahedral 2-fold vertex)
Method: single particle / : Zhou QF, Fox JM, Earnest JT, Ng TS, Kim AS, Fibriansah G, Kostyuchenko VA, Shu B, Diamond MS, Lok SM

EMDB-30278:
Helical reconstruction of Dengue virus serotype 3 complexed with Fab C10
Method: helical / : Morrone S, Chew SV

EMDB-30279:
Helical reconstruction of Zika virus complexed with Fab C10
Method: helical / : Morrone S, Chew SV

EMDB-0981:
Structure of Mycobacterium smegmatis succinate dehydrogenase 2
Method: single particle / : Gao Y, Gong H, Zhou X, Xiao Y, Wang W, Ji W, Wang Q, Rao Z

EMDB-30192:
Cryo-EM structure of zika virus complexed with Fab SIgN-3C at pH 6.5
Method: single particle / : Zhang S, Chew SV, Lim XN, Ng TS, Kostyuchenko VA, Lok SM

EMDB-30193:
Cryo-EM structure of zika virus complexed with Fab SIgN-3C at pH 8.0
Method: single particle / : Zhang S, Chew SV, Lim XN, Ng TS, Kostyuchenko VA, Lok SM

EMDB-30194:
Cryo-EM structure of Dengue virus serotype 2 complexed with Fab SIgN-3C at pH 6.5
Method: single particle / : Zhang S, Chew SV, Lim XN, Ng TS, Kostyuchenko VA, Lok SM

EMDB-30195:
Cryo-EM structure of Dengue virus serotype 2 complexed with Fab SIgN-3C at pH 8.0
Method: single particle / : Zhang S, Chew SV, Lim XN, Ng TS, Kostyuchenko VA, Lok SM

EMDB-30196:
Cryo-EM structure of Dengue virus serotype 2 complexed with Fab SIgN-3C at pH 5.0
Method: single particle / : Zhang S, Chew SV

EMDB-30197:
Cryo-EM structure of Dengue virus serotype 2 complexed with SIgN-3C IgG
Method: single particle / : Zhang S, Chew SV

EMDB-0932:
Cryo-EM structure of immature Zika virus in complex with human antibody DV62.5 Fab
Method: single particle / : Tan TY, Fibriansah G

EMDB-0933:
Cryo-EM structure of immature Zika virus
Method: single particle / : Tan TY, Fibriansah G

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more