[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 32 items for (author: koning & ri)

EMDB-16805:
Cryo-EM structure of PcrV/Fab(30-B8)
Method: single particle / : Yuan B, Simonis A, Marlovits TC

EMDB-16807:
Cryo-EM structure of PcrV/Fab(11-E5)
Method: single particle / : Yuan B, Simonis A, Marlovits TC

PDB-8cr9:
Cryo-EM structure of PcrV/Fab(30-B8)
Method: single particle / : Yuan B, Simonis A, Marlovits TC

PDB-8crb:
Cryo-EM structure of PcrV/Fab(11-E5)
Method: single particle / : Yuan B, Simonis A, Marlovits TC

EMDB-13738:
Horse spleen apoferritin
Method: single particle / : Koning RI, Renault L

EMDB-11514:
Molecular pore spanning the double membranes of murine coronaviral (MHV-A59) replication organelles.
Method: subtomogram averaging / : Barcena M, Wolff G

EMDB-11515:
Molecular pore spanning the double membranes of a mutant murine coronaviral (MHV-A59 GFP-nsp3) replication organelles.
Method: subtomogram averaging / : Barcena M, Wolff G

EMDB-4231:
C1-IgG1 complex on liposomes
Method: subtomogram averaging / : Howes SC, Koning RI, de Jong RN, Beurskens FJ, Koster AJ, Sharp TH

EMDB-4232:
Cryo-EM reconstruction of C1-IgG1 complex
Method: single particle / : Ugurlar D, Howes SC, de Kreuk BJK, de Jong RN, Beurskens FJ, Koster AJ, Parren PWHI, Sharp TH, Gros P, Koning RI

EMDB-3540:
Asymmetric reconstruction of MS2 virion
Method: single particle / : Koning RI, Gomez Blanco J, Akopjana I, Vargas J, Kazaks A, Tars K, Carazo JM, Koster AJ

EMDB-4098:
Cryo-EM reconstruction of bacteriophage AP205 virus-like particles.
Method: single particle / : Diebolder CA, Rumnieks J, Tars K, Koning RI

PDB-5lqp:
Cryo-EM reconstruction of bacteriophage AP205 virus-like particles.
Method: single particle / : Diebolder CA, Rumnieks J, Tars K, Koning RI

EMDB-3402:
Asymmetric cryo-EM reconstruction of phage MS2 reveals genome structure in situ
Method: single particle / : Koning RI, Gomez-Blanco J, Akopjana I, Vargas J, Kazaks A, Tars K, Carazo JM, Koster AJ

EMDB-3403:
Asymmetric cryo-EM reconstruction of phage MS2 reveals genome structure in situ
Method: single particle / : Koning RI, Gomez-Blanco J, Akopjana I, Vargas J, Kazaks A, Tars K, Carazo JM, Koster AJ

EMDB-3404:
Asymmetric cryo-EM reconstruction of phage MS2 reveals genome structure in situ
Method: single particle / : Koning RI, Gomez-Blanco J, Akopjana I, Vargas J, Kazaks A, Tars K, Carazo JM, Koster AJ

EMDB-3138:
Multiple capsid-stabilizing protein-RNA and protein-protein interactions revealed in a high-resolution structure of an emerging picornavirus causing neonatal sepsis
Method: single particle / : Shakeel S, Westerhuis BM, Domanska A, Koning RI, Matadeen R, Koster AJ, Bakker AQ, Beaumont T, Wolthers KC, Butcher SJ

EMDB-3322:
Multiple capsid-stabilizing interactions revealed in a high-resolution structure of an emerging picornavirus causing neonatal sepsis
Method: single particle / : Shakeel S, Westerhuis BM, Domanska A, Koning RI, Matadeen R, Koster AJ, Bakker AQ, Beaumont T, Wolthers KC, Butcher SJ

EMDB-3137:
Multiple capsid-stabilizing protein-RNA and protein-protein interactions revealed in a high-resolution structure of an emerging picornavirus causing neonatal sepsis
Method: single particle / : Shakeel S, Westerhuis BM, Domanska A, Koning RI, Matadeen R, Koster AJ, Bakker AQ, Beaumont T, Wolthers KC, Butcher SJ

PDB-5apm:
Multiple capsid-stabilizing protein-RNA and protein-protein interactions revealed in a high-resolution structure of an emerging picornavirus causing neonatal sepsis
Method: single particle / : Shakeel S, Westerhuis BM, Domanska A, Koning RI, Matadeen R, Koster AJ, Bakker AQ, Beaumont T, Wolthers KC, Butcher SJ

EMDB-2901:
Cryo electron tomography of Naip5/Nlrc4 inflammasome
Method: subtomogram averaging / : Diebolder CA, Halff EF, Koster AJ, Huizinga EG, Koning RI

PDB-5aj2:
Cryo electron tomography of the Naip5-Nlrc4 inflammasome
Method: electron tomography / : Diebolder CA, Halff EF, Koster AJ, Huizinga EG, Koning RI

EMDB-2506:
Cryo-electron tomography average of an C1-IgG complex
Method: subtomogram averaging / : Diebolder CA, Beurskens FJ, de Jong RN, Koning RI, Strumane K, Lindorfer MA, Voorhorst M, Ugurlar D, Rosati S, Heck AJR, van de Winkel JGJ, Wilson IA, Koster AJ, Taylor RP, Ollmann-Saphire E, Burton DR, Schuurman J, Gros P, Parren PWHI

EMDB-2507:
Cryo-electron tomography average of an C1-IgG complex
Method: subtomogram averaging / : Diebolder CA, Beurskens FJ, de Jong RN, Koning RI, Strumane K, Lindorfer MA, Voorhorst M, Ugurlar D, Rosati S, Heck AJR, van de Winkel JGJ, Wilson IA, Koster AJ, Taylor RP, Ollmann-Saphire E, Burton DR, Schuurman J, Gros P, Parren PWHI

EMDB-2554:
electron tomography average of an IgG hexamer
Method: subtomogram averaging / : Diebolder CA, Beurskens FJ, de Jong RN, Koning RI, Strumane K, Lindorfer MA, Voorhorst M, Ugurlar D, Rosati S, Heck AJR, van de Winkel JGJ, Wilson IA, Koster AJ, Taylor RP, Ollmann-Saphire E, Burton DR, Schuurman J, Gros P, Parren PWHI

EMDB-1455:
Recycling of Aborted Ribosomal 50S Subunit-Nascent Chain-tRNA Complexes by the Heat Shock Protein Hsp15.
Method: single particle / : Jiang L, Schaffitzel C, Bingel-Erlenmeyer R, Ban N, Korber P, Koning RI, Plaisier JR, Abrahams JP

EMDB-1456:
Recycling of Aborted Ribosomal 50S Subunit-Nascent Chain-tRNA Complexes by the Heat Shock Protein Hsp15.
Method: single particle / : Jiang L, Schaffitzel C, Bingel-Erlenmeyer R, Ban N, Korber P, Koning RI, Plaisier JR, Abrahams JP

PDB-3bbu:
The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex
Method: single particle / : Jiang L, Abrahams JP

PDB-3bbv:
The tRNA(phe) fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex
Method: single particle / : Jiang L, Abrahams JP

PDB-3bbx:
The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex
Method: single particle / : Jiang L, Abrahams JP

EMDB-1250:
Structure of the E. coli signal recognition particle bound to a translating ribosome.
Method: single particle / : Schaffitzel C, Oswald M, Berger I, Ishikawa T, Abrahams JP, Koerten HK, Koning RI, Ban N

EMDB-1251:
Structure of the E. coli signal recognition particle bound to a translating ribosome.
Method: single particle / : Schaffitzel C, Oswald M, Berger I, Ishikawa T, Abrahams JP, Koerten HK, Koning RI, Ban N

PDB-2iy3:
Structure of the E. Coli Signal Regognition Particle
Method: single particle / : Schaffitzel C, Oswald M, Berger I, Ishikawa T, Abrahams JP, Koerten HK, Koning RI, Ban N

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more