[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 458 items for (author: kato & t)

EMDB-37850:
Cryo-EM structure of native H. thermoluteolus TH-1 GroEL
Method: single particle / : Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S

EMDB-37853:
Cryo-EM structure of H. thermoluteolus GroEL-GroES2 football complex
Method: single particle / : Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S

EMDB-37862:
Cryo-EM structure of H. thermophilus GroEL-GroES2 asymmetric football complex
Method: single particle / : Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S

EMDB-37863:
Cryo-EM structure of H. thermophilus GroEL-GroES bullet complex
Method: single particle / : Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S

PDB-8wu4:
Cryo-EM structure of native H. thermoluteolus TH-1 GroEL
Method: single particle / : Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S

PDB-8wuc:
Cryo-EM structure of H. thermoluteolus GroEL-GroES2 football complex
Method: single particle / : Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S

PDB-8wuw:
Cryo-EM structure of H. thermophilus GroEL-GroES2 asymmetric football complex
Method: single particle / : Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S

PDB-8wux:
Cryo-EM structure of H. thermophilus GroEL-GroES bullet complex
Method: single particle / : Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S

EMDB-37480:
PSI-LHCI of the red alga Cyanidium caldarium RK-1 (NIES-2137)
Method: single particle / : Kato K, Hamaguchi T, Nakajima Y, Kawakami K, Yonekura K, Shen JR, Nagao R

PDB-8wey:
PSI-LHCI of the red alga Cyanidium caldarium RK-1 (NIES-2137)
Method: single particle / : Kato K, Hamaguchi T, Nakajima Y, Kawakami K, Yonekura K, Shen JR, Nagao R

EMDB-35029:
SARS-CoV2 spike protein with ACE2, no ACE2 binding.
Method: single particle / : Kishikawa J, Hirose M, Kato T, Okamoto T

EMDB-35030:
SARS-CoV2 spike protein with ACE2. 1 ACE2 bound form.
Method: single particle / : Kishikawa J, Hirose M, Kato T, Okamoto T

EMDB-35031:
SARS-CoV2 spike protein with ACE2. 2 ACE2 bound form.
Method: single particle / : Kishikawa J, Hirose M, Kato T, Okamoto T

EMDB-35032:
SARS-CoV2 spike protein with ACE2. 3 ACE2 bound form.
Method: single particle / : Kishikawa J, Hirose M, Kato T, Okamoto T

EMDB-35036:
SARS-CoV2 spike protein with ACE2 decoy.no ACE2 decoy binding
Method: single particle / : Kishikawa J, Hirose M, Kato T, Okamoto T

EMDB-35037:
SARS-CoV2 spike protein with ACE2 decoy. 1 ACE2 decoy bound form.
Method: single particle / : Kishikawa J, Hirose M, Kato T, Okamoto T

EMDB-35038:
SARS-CoV2 spike protein with ACE2 decoy. 1 ACE2 decoy bound and 2 RBD up form.
Method: single particle / : Kishikawa J, Hirose M, Kato T, Okamoto T

EMDB-35039:
SARS-CoV2 spike protein with ACE2 decoy. 2 ACE2 decoy bound form.
Method: single particle / : Kishikawa J, Hirose M, Kato T, Okamoto T

EMDB-35040:
SARS-CoV2 spike protein with ACE2 decoy. 3 ACE2 decoy bound form.
Method: single particle / : Kishikawa J, Hirose M, Kato T, Okamoto T

EMDB-36345:
RBD of SARS-CoV2 spike protein with ACE2 decoy
Method: single particle / : Kishikawa J, Hirose M, Kato T, Okamoto T

PDB-8jje:
RBD of SARS-CoV2 spike protein with ACE2 decoy
Method: single particle / : Kishikawa J, Hirose M, Kato T, Okamoto T

EMDB-33785:
Cryo-EM structure of the histamine-bound histamine H4 receptor and Gq complex
Method: single particle / : Im D, Iwata S, Asada H

EMDB-33786:
Cryo-EM structure of the imetit-bound histamine H4 receptor and Gq complex
Method: single particle / : Im D, Iwata S, Asada H

EMDB-34468:
Human ATAD2 Walker B mutant, ATP state
Method: single particle / : Cho C, Song J

EMDB-36665:
Human ATAD2 Walker B mutant-H3/H4K5Q complex, ATP state
Method: single particle / : Cho C, Song J

EMDB-36666:
Human ATAD2 Walker B mutant-H3/H4K5Q complex, ATP state (Class II)
Method: single particle / : Cho C, Song J

EMDB-36667:
Human ATAD2 Walker B mutant-H3/H4K5Q complex, ATP state (Class III)
Method: single particle / : Cho C, Song J

PDB-8h3h:
Human ATAD2 Walker B mutant, ATP state
Method: single particle / : Cho C, Song J

PDB-8juw:
Human ATAD2 Walker B mutant-H3/H4K5Q complex, ATP state
Method: single particle / : Cho C, Song J

PDB-8juy:
Human ATAD2 Walker B mutant-H3/H4K5Q complex, ATP state (Class II)
Method: single particle / : Cho C, Song J

PDB-8juz:
Human ATAD2 Walker B mutant-H3/H4K5Q complex, ATP state (Class III)
Method: single particle / : Cho C, Song J

EMDB-34871:
Cryo-EM structure of biparatopic antibody Bp109-92 in complex with TNFR2
Method: single particle / : Akiba H, Fujita J, Ise T, Nishiyama K, Miyata T, Kato T, Namba K, Ohno H, Kamada H, Nagata S, Tsumoto K

PDB-8hlb:
Cryo-EM structure of biparatopic antibody Bp109-92 in complex with TNFR2
Method: single particle / : Akiba H, Fujita J, Ise T, Nishiyama K, Miyata T, Kato T, Namba K, Ohno H, Kamada H, Nagata S, Tsumoto K

EMDB-36389:
Cryo-EM structure of the human nucleosome with scFv
Method: single particle / : Oishi T, Hatazawa S, Kujirai T, Kato J, Kobayashi Y, Ogasawara M, Akatsu M, Takizawa Y, Kurumizaka H

EMDB-36390:
Cryo-EM structure of the human nucleosome lacking N-terminal region of H2A, H2B, H3, and H4
Method: single particle / : Oishi T, Hatazawa S, Kujirai T, Kato J, Kobayashi Y, Ogasawara M, Akatsu M, Takizawa Y, Kurumizaka H

EMDB-36391:
Cryo-EM structure of the 145 bp human nucleosome containing H3.2 C110A mutant
Method: single particle / : Oishi T, Hatazawa S, Kujirai T, Kato J, Kobayashi Y, Ogasawara M, Akatsu M, Takizawa Y, Kurumizaka H

EMDB-36393:
Cryo-EM structure of the 145 bp human nucleosome containing acetylated H3 tail
Method: single particle / : Oishi T, Hatazawa S, Kujirai T, Kato J, Kobayashi Y, Ogasawara M, Akatsu M, Takizawa Y, Kurumizaka H

PDB-8jl9:
Cryo-EM structure of the human nucleosome with scFv
Method: single particle / : Oishi T, Hatazawa S, Kujirai T, Kato J, Kobayashi Y, Ogasawara M, Akatsu M, Takizawa Y, Kurumizaka H

PDB-8jla:
Cryo-EM structure of the human nucleosome lacking N-terminal region of H2A, H2B, H3, and H4
Method: single particle / : Oishi T, Hatazawa S, Kujirai T, Kato J, Kobayashi Y, Ogasawara M, Akatsu M, Takizawa Y, Kurumizaka H

PDB-8jlb:
Cryo-EM structure of the 145 bp human nucleosome containing H3.2 C110A mutant
Method: single particle / : Oishi T, Hatazawa S, Kujirai T, Kato J, Kobayashi Y, Ogasawara M, Akatsu M, Takizawa Y, Kurumizaka H

PDB-8jld:
Cryo-EM structure of the 145 bp human nucleosome containing acetylated H3 tail
Method: single particle / : Oishi T, Hatazawa S, Kujirai T, Kato J, Kobayashi Y, Ogasawara M, Akatsu M, Takizawa Y, Kurumizaka H

EMDB-36048:
Cryo-EM structure of hZnT7-Fab complex in zinc-unbound state, determined in outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

EMDB-36049:
Cryo-EM structure of hZnT7-Fab complex in zinc-bound state, determined in outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

EMDB-36050:
Cryo-EM structure of hZnT7-Fab complex in zinc-unbound state, determined in heterogeneous conformations- one subunit in an inward-facing and the other in an outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

EMDB-36051:
Cryo-EM structure of hZnT7-Fab complex in zinc state 2, determined in heterogeneous conformations- one subunit in an inward-facing zinc-bound and the other in an outward-facing zinc-bound conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

EMDB-36052:
Cryo-EM structure of hZnT7DeltaHis-loop-Fab complex in zinc-unbound state, determined in outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

EMDB-36053:
Cryo-EM structure of hZnT7DeltaHis-loop-Fab complex in zinc-bound state, determined in outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

EMDB-36055:
Cryo-EM structure of hZnT7-Fab complex in zinc state 1, determined in heterogeneous conformations- one subunit in an inward-facing zinc-bound and the other in an outward-facing zinc-unbound conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

PDB-8j7t:
Cryo-EM structure of hZnT7-Fab complex in zinc-unbound state, determined in outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

PDB-8j7u:
Cryo-EM structure of hZnT7-Fab complex in zinc-bound state, determined in outward-facing conformation
Method: single particle / : Han BB, Inaba K, Watanabe S

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more