[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 33 items for (author: jenni, & s.)

PDB-8uk2:
The rotavirus VP5*/VP8* conformational transition permeabilizes membranes to Ca2+ (class 5 reconstruction)
Method: single particle / : De Sautu M, Herrmann T, Jenni S, Harrison SC

PDB-8uk3:
The rotavirus VP5*/VP8* conformational transition permeabilizes membranes to Ca2+ (class 6 reconstruction)
Method: single particle / : De Sautu M, Herrmann T, Jenni S, Harrison SC

PDB-7ums:
Structure of the VP5*/VP8* assembly from the human rotavirus strain CDC-9 in complex with antibody 41 - Upright conformation
Method: single particle / : Jenni S, Zongli L, Wang Y, Bessey T, Salgado EN, Schmidt AG, Greenberg HB, Jiang B, Harrison SC

PDB-7umt:
Structure of the VP5*/VP8* assembly from the human rotavirus strain CDC-9 - Reversed conformation
Method: single particle / : Jenni S, Zongli L, Wang Y, Bessey T, Salgado EN, Schmidt AG, Greenberg HB, Jiang B, Harrison SC

PDB-7umk:
Structure of vesicular stomatitis virus (helical reconstruction, 4.1 A resolution)
Method: helical / : Jenni S, Horwitz JA, Bloyet LM, Whelan SPJ, Harrison SC

PDB-7uml:
Structure of vesicular stomatitis virus (local reconstruction, 3.5 A resolution)
Method: single particle / : Jenni S, Horwitz JA, Bloyet LM, Whelan SPJ, Harrison SC

PDB-7n62:
SARS-CoV-2 Spike (2P) in complex with C12C9 Fab (NTD local reconstruction)
Method: single particle / : Windsor IW, Jenni S, Bajic G, Tong P, Gautam AK, Wesemann DR, Harrison SC

PDB-7n64:
SARS-CoV-2 Spike (2P) in complex with G32R7 Fab (RBD and NTD local reconstruction)
Method: single particle / : Windsor IW, Jenni S, Tong P, Gautam AK, Wesemann DR, Harrison SC

PDB-6wxe:
Cryo-EM reconstruction of VP5*/VP8* assembly from rhesus rotavirus particles - Upright conformation
Method: single particle / : Herrmann T, Harrison SC, Jenni S

PDB-6wxf:
Cryo-EM reconstruction of VP5*/VP8* assembly from rhesus rotavirus particles - Intermediate conformation
Method: single particle / : Herrmann T, Harrison SC, Jenni S

PDB-6wxg:
Cryo-EM reconstruction of VP5*/VP8* assembly from rhesus rotavirus particles - Reversed conformation
Method: single particle / : Herrmann T, Harrison SC, Jenni S

PDB-6po1:
ClpX-ClpP complex bound to substrate and ATP-gamma-S, class 4
Method: single particle / : Fei X, Jenni S, Harrison SC, Sauer RT

PDB-6po3:
ClpX-ClpP complex bound to substrate and ATP-gamma-S, class 3
Method: single particle / : Fei X, Jenni S, Harrison SC, Sauer RT

PDB-6pod:
ClpX-ClpP complex bound to substrate and ATP-gamma-S, class 2
Method: single particle / : Fei X, Jenni S, Harrison SC, Sauer RT

PDB-6pos:
ClpX-ClpP complex bound to substrate and ATP-gamma-S, class 1
Method: single particle / : Fei X, Jenni S, Harrison SC, Sauer RT

PDB-6pp5:
ClpX in ClpX-ClpP complex bound to substrate and ATP-gamma-S, class 4
Method: single particle / : Fei X, Jenni S, Harrison SC, Sauer RT

PDB-6pp6:
ClpX in ClpX-ClpP complex bound to substrate and ATP-gamma-S, class 3
Method: single particle / : Fei X, Jenni S, Harrison SC, Sauer RT

PDB-6pp7:
ClpX in ClpX-ClpP complex bound to substrate and ATP-gamma-S, class 2
Method: single particle / : Fei X, Jenni S, Harrison SC, Sauer RT

PDB-6pp8:
ClpX in ClpX-ClpP complex bound to substrate and ATP-gamma-S, class 1
Method: single particle / : Fei X, Jenni S, Harrison SC, Sauer RT

PDB-6ppe:
ClpP and ClpX IGF loop in ClpX-ClpP complex with D7 symmetry
Method: single particle / : Fei X, Jenni S, Harrison SC, Sauer RT

PDB-6u1x:
Structure of the Vesicular Stomatitis Virus L Protein in Complex with Its Phosphoprotein Cofactor (3.0 A resolution)
Method: single particle / : Jenni S, Bloyet LM, Dias-Avalos R, Liang B, Wheelman SPJ, Grigorieff N, Harrison SC

PDB-6oj3:
In situ structure of rotavirus VP1 RNA-dependent RNA polymerase (TLP)
Method: single particle / : Jenni S, Salgado EN, Herrmann T, Li Z, Grant T, Grigorieff N, Trapani S, Estrozi LF, Harrison SC

PDB-6oj4:
In situ structure of rotavirus VP1 RNA-dependent RNA polymerase (DLP)
Method: single particle / : Jenni S, Salgado EN, Herrmann T, Li Z, Grant T, Grigorieff N, Trapani S, Estrozi LF, Harrison SC

PDB-6oj5:
In situ structure of rotavirus VP1 RNA-dependent RNA polymerase (TLP_RNA)
Method: single particle / : Jenni S, Salgado EN, Herrmann T, Li Z, Grant T, Grigorieff N, Trapani S, Estrozi LF, Harrison SC

PDB-6oj6:
In situ structure of rotavirus VP1 RNA-dependent RNA polymerase (DLP_RNA)
Method: single particle / : Jenni S, Salgado EN, Herrmann T, Li Z, Grant T, Grigorieff N, Trapani S, Estrozi LF, Harrison SC

PDB-6cfz:
Structure of the DASH/Dam1 complex shows its role at the yeast kinetochore-microtubule interface
Method: single particle / : Jenni S, Harrison SC

PDB-5ujz:
CryoEM structure of an influenza virus receptor-binding site antibody-antigen interface - Class 1
Method: single particle / : Liu Y, Pan J, Caradonna T, Jenni S, Raymond DD, Schmidt AG, Harrison SC, Grigorieff N

PDB-5uk0:
CryoEM structure of an influenza virus receptor-binding site antibody-antigen interface - Class 2
Method: single particle / : Liu Y, Pan J, Caradonna T, Jenni S, Raymond DD, Schmidt AG, Harrison SC, Grigorieff N

PDB-5uk1:
CryoEM structure of an influenza virus receptor-binding site antibody-antigen interface - Class 3
Method: single particle / : Liu Y, Pan J, Caradonna T, Jenni S, Raymond DD, Schmidt AG, Harrison SC, Grigorieff N

PDB-5uk2:
CryoEM structure of an influenza virus receptor-binding site antibody-antigen interface - Class 4
Method: single particle / : Liu Y, Pan J, Caradonna T, Jenni S, Raymond DD, Schmidt AG, Harrison SC, Grigorieff N

PDB-5a22:
Structure of the L protein of vesicular stomatitis virus from electron cryomicroscopy
Method: single particle / : Liang B, Li Z, Jenni S, Rameh AA, Morin BM, Grant T, Grigorieff N, Harrison SC, Whelan SPJ

PDB-2akh:
Normal mode-based flexible fitted coordinates of a non-translocating SecYEG protein-conducting channel into the cryo-EM map of a SecYEG-nascent chain-70S ribosome complex from E. coli
Method: single particle / : Mitra KM, Schaffitzel C, Shaikh T, Tama F, Jenni S, Brooks III CL, Ban N, Frank J

PDB-2aki:
Normal mode-based flexible fitted coordinates of a translocating SecYEG protein-conducting channel into the cryo-EM map of a SecYEG-nascent chain-70S ribosome complex from E. coli
Method: single particle / : Mitra K, Schaffitzel C, Shaikh T, Tama F, Jenni S, Brooks III CL, Ban N, Frank J

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more