[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 58 items for (author: jamie & h & d & cate)

EMDB-29449:
E. coli 70S ribosome with an improved MS2 Tag inserted in H98 (Composite Map)
Method: single particle / : Nissley AJ, Cate JHD

EMDB-29483:
E. coli 70S ribosome with an improved MS2 tag inserted in H98 (70S map)
Method: single particle / : Nissley AJ, Cate JHD

EMDB-29484:
E. coli 70S ribosome with an improved MS2 tag inserted in H98 (50S focused map)
Method: single particle / : Nissley AJ, Cate JHD

EMDB-29485:
E. coli 70S ribosome with an improved MS2 tag inserted in H98 (30S focused map)
Method: single particle / : Nissley AJ, Cate JHD

PDB-8fto:
E. coli 70S ribosome with an improved MS2 tag inserted in H98
Method: single particle / : Nissley AJ, Cate JHD

EMDB-28254:
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Method: single particle / : Watson ZL, Cate JHD

EMDB-28255:
70S map for: "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates"
Method: single particle / : Watson ZL, Cate JHD

EMDB-28256:
30S-focused map for: "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates"
Method: single particle / : Watson ZL, Cate JHD

EMDB-28257:
50S-focused map for: "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates"
Method: single particle / : Watson ZL, Cate JHD

PDB-8emm:
Composite 70S ribosome structure for "Atomistic simulations of the E. coli ribosome provide selection criteria for translationally active substrates
Method: single particle / : Watson ZL, Cate JHD

EMDB-29790:
30S focus refined map of WT E.coli ribosome complexed with A-site ortho-aminobenzoic acid charged tRNA-Phe
Method: single particle / : Majumdar C, Cate JHD

EMDB-29786:
Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe
Method: single particle / : Majumdar C, Cate JHD

EMDB-29788:
Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe
Method: single particle / : Majumdar C, Cate JHD

PDB-8g6w:
Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe
Method: single particle / : Majumdar C, Cate JHD

PDB-8g6y:
Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe
Method: single particle / : Majumdar C, Cate JHD

EMDB-29787:
Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe
Method: single particle / : Majumdar C, Cate JHD

PDB-8g6x:
Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe
Method: single particle / : Majumdar C, Cate JHD

EMDB-28165:
E. coli 70S ribosome with A-loop mutations U2554C and U2555C (Composite Map)
Method: single particle / : Nissley AJ, Penev PI, Watson ZL, Banfield JF, Cate JHD

EMDB-28218:
E. coli 70S ribosome with A-loop mutations U2554C and U2555C (50S Focus Refinement)
Method: single particle / : Nissley AJ, Penev PI, Watson ZL, Banfield JF, Cate JHD

EMDB-28229:
E. coli 70S ribosome with A-loop mutations U2554C and U2555C (30S Focus Refinement)
Method: single particle / : Nissley AJ, Penev PI, Watson ZL, Banfield JF, Cate JHD

EMDB-28230:
E. coli 70S ribosome with A-loop mutations U2554C and U2555C: A-site tRNA class 2
Method: single particle / : Nissley AJ, Penev PI, Watson ZL, Banfield JF, Cate JHD

PDB-8eiu:
E. coli 70S ribosome with A-loop mutations U2554C and U2555C
Method: single particle / : Nissley AJ, Penev PI, Watson ZL, Banfield JF, Cate JHD

EMDB-22086:
Intermediate ribosome nascent chain complex during PF846 stalled translation termination
Method: single particle / : Li W, Cate J, Ward RF, Chang S

EMDB-22085:
Selectively stalling of translation termination by a drug-like compound
Method: single particle / : Li W, Cate J, Ward RF, Chang S

PDB-6xa1:
Structure of a drug-like compound stalled human translation termination complex
Method: single particle / : Li W, Cate J

EMDB-22586:
Structure of the Bacterial Ribosome at 2 Angstrom Resolution (composite structure)
Method: single particle / : Watson ZL, Ward FR

EMDB-22607:
Structure of the Bacterial Ribosome at 2 Angstrom Resolution (70S ribosome)
Method: single particle / : Watson ZL, Ward FR, Meheust R, Ad O, Schepartz A, Banfield JF, Cate JHD

EMDB-22614:
Structure of the Bacterial Ribosome at 2 Angstrom Resolution (50S focused refinement)
Method: single particle / : Watson ZL, Ward FR, Meheust R, Ad O, Schepartz A, Banfield JF, Cate JHD

EMDB-22632:
Structure of the Bacterial Ribosome at 2 Angstrom Resolution (30S focused refinement)
Method: single particle / : Watson ZL, Ward FR, Meheust R, Ad O, Schepartz A, Banfield JF, Cate JHD

EMDB-22635:
Structure of the Bacterial Ribosome at 2 Angstrom Resolution (30S head domain focused refinement)
Method: single particle / : Watson ZL, Ward FR, Meheust R, Ad O, Schepartz A, Banfield JF, Cate JHD

EMDB-22636:
Structure of the Bacterial Ribosome at 2 Angstrom Resolution (30S platform domain focused refinement)
Method: single particle / : Watson ZL, Ward FR, Meheust R, Ad O, Schepartz A, Banfield JF, Cate JHD

EMDB-22637:
Structure of the Bacterial Ribosome at 2 Angstrom Resolution (50S central protuberance focused refinement)
Method: single particle / : Watson ZL, Ward FR, Meheust R, Ad O, Schepartz A, Banfield JF, Cate JHD

PDB-7k00:
Structure of the Bacterial Ribosome at 2 Angstrom Resolution
Method: single particle / : Watson ZL, Ward FR, Meheust R, Ad O, Schepartz A, Banfield JF, Cate JHD

EMDB-20853:
P7A7 ribosome large subunit
Method: single particle / : Watson ZL, Ward FR, Cate JHD

EMDB-20854:
E. coli large ribosomal subunit
Method: single particle / : Watson ZL, Ward FR, Cate JHD

EMDB-20638:
E. coli 50S with phazolicin (PHZ) bound in exit tunnel
Method: single particle / : Watson ZL, Cate JHD

PDB-6u48:
E. coli 50S with phazolicin (PHZ) bound in exit tunnel
Method: single particle / : Watson ZL, Cate JHD, Polikanov YS, Severinov K

PDB-6ole:
Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs
Method: single particle / : Li W, Cate JHD

PDB-6olf:
Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs
Method: single particle / : Li W, Cate JHD

PDB-6olg:
Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)
Method: single particle / : Li W, Cate JHD

PDB-6oli:
Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)
Method: single particle / : Li W, Cate JHD

PDB-6olz:
Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA
Method: single particle / : Li W, Cate JHD

PDB-6om0:
Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with AP and PE tRNAs
Method: single particle / : Li W, Cate JHD

PDB-6om7:
Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs
Method: single particle / : Li W, Cate JHD

EMDB-0526:
Structure of drug-like molecule stalled USO1 ribosome nascent chain complex (human)
Method: single particle / : Li W, Cate JHD

EMDB-20134:
Structure of a drug-like molecule stalled PCSK9 ribosome nascent chain complex (PCSK9-RNC) with AP tRNA and PE tRNA (sample prepared with a short incubation time)
Method: single particle / : Li W, Cate JHD

EMDB-20135:
Structure of a drug-like molecule stalled PCSK9 ribosome nascent chain complex (PCSK9-RNC) with PP tRNA (sample prepared with a short incubation time)
Method: single particle / : Li W, Cate JHD

EMDB-0596:
Structure of a drug-like molecule stalled PCSK9 ribosome nascent chain complex (PCSK9-RNC) with AP tRNA and PE tRNA
Method: single particle / : Li W, Cate JHD

EMDB-0597:
Structure of a drug-like molecule stalled ribosome nascent chain complex (PCSK9-RNC) in rotated state with AA tRAN and PE tRNA
Method: single particle / : Li W, Cate JHD

EMDB-0598:
Structure of a drug-like molecule stalled ribosome nascent chain complex (PCSK9_RNC) in non-rotated state with PP tRNA
Method: single particle / : Li W, Cate JHD

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more