[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 114 items for (author: hashem & y)

EMDB-17329:
48S late-stage initiation complex with m6A mRNA
Method: single particle / : Guca E, Lima LHF, Boissier F, Hashem Y

EMDB-17330:
48S late-stage initiation complex with non methylated mRNA
Method: single particle / : Guca E, Lima LHF, Boissier F, Hashem Y

PDB-8p03:
48S late-stage initiation complex with m6A mRNA
Method: single particle / : Guca E, Lima LHF, Boissier F, Hashem Y

PDB-8p09:
48S late-stage initiation complex with non methylated mRNA
Method: single particle / : Guca E, Lima LHF, Boissier F, Hashem Y

EMDB-17445:
Cryo-EM structure of the c-di-GMP-free FleQ-FleN master regulator complex of P. aeruginosa
Method: single particle / : Torres-Sanchez L, Krasteva PV

EMDB-17581:
Cryo-EM structure of the c-di-GMP-bound FleQ-FleN master regulator complex from Pseudomonas aeruginosa
Method: single particle / : Torres-Sanchez LT, Krasteva PV

PDB-8p53:
Cryo-EM structure of the c-di-GMP-free FleQ-FleN master regulator complex of P. aeruginosa
Method: single particle / : Torres-Sanchez L, Krasteva PV

PDB-8pb9:
Cryo-EM structure of the c-di-GMP-bound FleQ-FleN master regulator complex from Pseudomonas aeruginosa
Method: single particle / : Torres-Sanchez LT, Krasteva PV

EMDB-13806:
50S LSU focused-refinement of the erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain
Method: single particle / : Fostier CR, Ousalem F, Soufari H, Leroy EC, Saravuth N, Innis A, Hashem Y, Boel G

EMDB-13807:
30S-body SSU focused-refinement of the erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain
Method: single particle / : Fostier CR, Ousalem F, Soufari H, Leroy EC, Saravuth N, Innis A, Hashem Y, Boel G

EMDB-13808:
30S-head SSU focused-refinement of the erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain
Method: single particle / : Fostier CR, Ousalem F, Soufari H, Leroy EC, Saravuth N, Innis A, Hashem Y, Boel G

EMDB-13477:
Small subunit of the Chlamydomonas reinhardtii mitoribosome
Method: single particle / : Waltz F, Soufari H, Hashem Y

PDB-7pkq:
Small subunit of the Chlamydomonas reinhardtii mitoribosome
Method: single particle / : Waltz F, Soufari H, Hashem Y

EMDB-13805:
Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain
Method: single particle / : Fostier CR, Ousalem F, Soufari H, Leroy EC, Ngo S, Innis A, Hashem Y, Boel G

PDB-7q4k:
Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain
Method: single particle / : Fostier CR, Ousalem F, Soufari H, Leroy EC, Ngo S, Innis A, Hashem Y, Boel G

EMDB-13480:
Large subunit of the Chlamydomonas reinhardtii mitoribosome
Method: single particle / : Waltz F, Soufari H, Hashem Y

PDB-7pkt:
Large subunit of the Chlamydomonas reinhardtii mitoribosome
Method: single particle / : Waltz F, Soufari H, Hashem Y

EMDB-13481:
Small subunit of the Chlamydomonas mitoribosome - head focus
Method: single particle / : Waltz F, Salinas-Giege T, Englmeier R, Meichel H, Soufari H, Kuhn L, Pfeffer S, Foerster F, Engel BD, Giege P, Drouard L, Hashem Y

EMDB-13578:
C.reinhardtii mitochondrial ribosome (in situ)
Method: subtomogram averaging / : Waltz F, Salinas-Giege T, Englmeier R, Meichel H, Soufari H, Kuhn L, Pfeffer S, Foerster F, Engel BD, Giege P, Drouard L, Hashem Y

EMDB-12178:
Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (body only)
Method: single particle / : Belinite M, Khusainov I, Marzi S, Romby P, Yusupov M, Hashem Y

EMDB-12179:
Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (head only)
Method: single particle / : Belinite M, Khusainov I, Marzi S, Romby P, Yusupov M, Hashem Y

PDB-7bgd:
Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (body only)
Method: single particle / : Belinite M, Khusainov I, Marzi S, Romby P, Yusupov M, Hashem Y

PDB-7bge:
Staphylococcus aureus 30S ribosomal subunit in presence of spermidine (head only)
Method: single particle / : Belinite M, Khusainov I, Marzi S, Romby P, Yusupov M, Hashem Y

EMDB-12090:
Staphylococcus aureus 30S ribosomal subunit in absence of spermidine with fixed helix 44
Method: single particle / : Belinite M, Khusainov I, Marzi S, Romby P, Yusupov M, Hashem Y

EMDB-12091:
Staphylococcus aureus 30S ribosomal subunit in absence of spermidine with reoriented helix 44
Method: single particle / : Belinite M, Khusainov I, Marzi S, Romby P, Yusupov M, Hashem Y

EMDB-11896:
43S preinitiation complex from Leishmania tarentolae with kDDX60 helicase
Method: single particle / : Bochler A, Brito Querido J, Prilepskaja T, Soufari H, Del Cistia ML, Kuhn L, Rimoldi Ribeiro A, Valasek LS, Hashem Y

EMDB-11829:
Leishmania Major mitochondrial ribosome
Method: single particle / : Soufari H, Waltz F, Parrot C, Hashem Y

PDB-7ane:
Leishmania Major mitochondrial ribosome
Method: single particle / : Soufari H, Waltz F, Parrot C, Bochler A, Hashem Y

EMDB-11796:
The Large subunit of the Kinetoplastid mitochondrial ribosome
Method: single particle / : Soufari H, Waltz F, Parrot C, Hashem Y

EMDB-11821:
Intermediate assembly of the Large subunit from Leishmania major mitochondrial ribosome
Method: single particle / : Soufari H, Hashem Y

EMDB-11846:
mt-SSU from Trypanosoma cruzi in complex with mt-IF-3.
Method: single particle / : Soufari H, Waltz F, Parrot C, Hashem Y

PDB-7aih:
The Large subunit of the Kinetoplastid mitochondrial ribosome
Method: single particle / : Soufari H, Waltz F, Parrot C, Bochler A, Hashem Y

PDB-7am2:
Intermediate assembly of the Large subunit from Leishmania major mitochondrial ribosome
Method: single particle / : Soufari H, Waltz F, Parrot C, Bochler A, Hashem Y

PDB-7aor:
mt-SSU from Trypanosoma cruzi in complex with mt-IF-3.
Method: single particle / : Soufari H, Waltz F, Parrot C, Bochler A, Hashem Y

EMDB-11893:
43S preinitiation complex from Trypanosoma cruzi with the kDDX60 helicase
Method: single particle / : Bochler A, Brito Querido J, Prilepskaja T, Soufari H, Del Cistia ML, Kuhn L, Rimoldi Ribeiro A, Valasek LS, Hashem Y

EMDB-11895:
43S preinitiation complex from Trypanosoma cruzi with the kDDX60 helicase bound with ATP
Method: single particle / : Bochler A, Brito Querido J, Prilepskaja T, Soufari H, Del Cistia ML, Kuhn L, Rimoldi Ribeiro A, Valasek LS, Hashem Y

PDB-7ase:
43S preinitiation complex from Trypanosoma cruzi with the kDDX60 helicase
Method: single particle / : Bochler A, Brito Querido J, Prilepskaja T, Soufari H, Del Cistia ML, Kuhn L, Rimoldi Ribeiro A, Valasek LS, Hashem Y

PDB-7ask:
43S preinitiation complex from Trypanosoma cruzi with the kDDX60 helicase bound with ATP
Method: single particle / : Bochler A, Brito Querido J, Prilepskaja T, Soufari H, Del Cistia ML, Kuhn L, Rimoldi Ribeiro A, Valasek LS, Hashem Y

EMDB-23052:
Staphylococcus aureus 30S ribosomal subunit in presence of spermidine
Method: single particle / : Belinite M, Khusainov I, Marzi S, Romby P, Yusupov M, Hashem Y

PDB-7kwg:
Staphylococcus aureus 30S ribosomal subunit in presence of spermidine
Method: single particle / : Belinite M, Khusainov I, Marzi S, Romby P, Yusupov M, Hashem Y

EMDB-11590:
The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
Method: single particle / : Abaeva I, Vicens Q, Bochler A, Soufari H, Simonetti A, Pestova TV, Hashem Y, Hellen CUT

PDB-7a01:
The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
Method: single particle / : Abaeva I, Vicens Q, Bochler A, Soufari H, Simonetti A, Pestova TV, Hashem Y, Hellen CUT

EMDB-11459:
The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
Method: single particle / : Abaeva IS, Vicens Q, Bochler A, Soufari H, Simonetti A, Pestova T, Hashem Y, Hellen CUT

PDB-6zvk:
The Halastavi arva virus (HalV) intergenic region IRES promotes translation by the simplest possible initiation mechanism
Method: single particle / : Abaeva IS, Vicens Q, Bochler A, Soufari H, Simonetti A, Pestova T, Hashem Y, Hellen CUT

EMDB-11513:
Focused reconstruction of the plant mitochondrial complex I
Method: single particle / : Soufari H, Waltz F, Hashem Y

EMDB-11614:
Plant mitochondrial respiratory complex I
Method: single particle / : Soufari H, Waltz F, Hashem Y

EMDB-11615:
Assembly intermediate of the plant mitochondrial complex I
Method: single particle / : Soufari H, Waltz F, Hashem Y

PDB-7a23:
Plant mitochondrial respiratory complex I
Method: single particle / : Soufari H, Waltz F, Hashem Y

PDB-7a24:
Assembly intermediate of the plant mitochondrial complex I
Method: single particle / : Soufari H, Waltz F, Hashem Y

EMDB-22143:
Cryo-EM structure of NusG-CTD bound to 70S ribosome
Method: single particle / : Washburn R, Zuber P

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more