[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 61 items for (author: hafenstein, & s.)

PDB-7utp:
CPV Affinity Purified Polyclonal Fab A Site Fab
Method: single particle / : Hartmann SR, Hafenstein SL, Charnesky AJ

PDB-7utr:
CPV Affinity Purified Polyclonal Fab B Site Fab
Method: single particle / : Hartmann SR, Hafenstein SL, Charnesky AJ

PDB-7uts:
CPV Total-Fab Polyclonal A Site Fab
Method: single particle / : Hartmann SR, Hafenstein SL, Charnesky AJ

PDB-7utu:
CPV Total-Fab Polyclonal B Site Fab (1 of 2)
Method: single particle / : Hartmann SR, Hafenstein SL, Charnesky AJ

PDB-7utv:
CPV Total-Fab Polyclonal B Site Fab (2 of 2)
Method: single particle / : Hartmann SR, Hafenstein SL, Charnesky AJ

PDB-8e01:
Structure of engineered nano-cage fusion protein
Method: single particle / : Moustafa IM, Hafenstein SL

PDB-8des:
Gokushovirus EC6098
Method: single particle / : Lee H, Fane BA, Hafenstein SL

PDB-7ryj:
Cryo EM analysis reveals inherent flexibility of authentic murine papillomavirus capsids
Method: single particle / : Hartmann SR, Hafenstein S

PDB-7m3l:
Canine parvovirus and Fab14 at partial occupancy
Method: single particle / : Goteschius DJ, Hartmann SR, Hafenstein SL

PDB-7m3m:
Canine parvovirus and Fab14 at partial occupancy
Method: single particle / : Goteschius DJ, Hartmann SR, Hafenstein SL

PDB-7m3n:
Canine parvovirus and Fab14 asymmetric reconstruction
Method: single particle / : Goteschius DJ, Hartmann SR, Hafenstein SL

PDB-7m3o:
Canine parvovirus asymmetric map
Method: single particle / : Goteschius DJ, Hartmann SR, Hafenstein SL

PDB-7kzf:
High resolution cryo EM analysis of HPV16 identifies minor structural protein L2 and describes capsid flexibility
Method: single particle / : Hartmann SR, Goetschius DJ, Hafenstein S

PDB-7k22:
Murine polyomavirus pentavalent capsomer with 8A7H5 Fab, subparticle reconstruction
Method: single particle / : Goetschius DJ, Hafenstein SL

PDB-7k23:
Murine polyomavirus hexavalent capsomer with 8A7H5 Fab, subparticle reconstruction
Method: single particle / : Goetschius DJ, Hafenstein SL

PDB-7k24:
Murine polyomavirus pentavalent capsomer, subparticle reconstruction
Method: single particle / : Goetschius DJ, Hafenstein SL

PDB-7k25:
Murine polyomavirus hexavalent capsomer, subparticle reconstruction
Method: single particle / : Goetschius DJ, Hafenstein SL

PDB-7jyi:
Subparticle Map of ZIKV MR-766
Method: single particle / : Jose J, Hafenstein S

PDB-6w6v:
Structure of yeast RNase MRP holoenzyme
Method: single particle / : Perederina A, Li D, Lee H, Bator C, Berezin I, Hafenstein SL, Krasilnikov AS

PDB-6uh1:
Structure of the EVA71 strain 11316 capsid
Method: single particle / : Lee H, Hafenstein S

PDB-6uh6:
EV-A71 strain 11316 complexed with MADAL compound 22
Method: single particle / : Lee H, Hafenstein S

PDB-6uh7:
EV-A71 strain 11316 complexed with MADAL compound 30
Method: single particle / : Lee H, Hafenstein S

PDB-6oas:
Structure of canine parvovirus in complex with transferrin receptor type-1
Method: single particle / : Lee H, Hafenstein S

PDB-6diz:
EV-A71 strain 11316 complexed with tryptophan dendrimer MADAL_0385
Method: single particle / : Sun L, Lee H, Thibaut HJ, Rivero-Buceta E, Martinez-Gualda B, Delang L, Leyssen P, Gago F, San-Felix A, Hafenstein S, Mirabelli C, Neyts J

PDB-6bsp:
High-Resolution Structure Analysis of Antibody V5 and U4 Conformational Epitope on Human Papillomavirus 16
Method: single particle / : Guan J, Bywaters SM, Brendle SA, Ashley RE, Makhov AM, Conway JF, Christenson ND, Hafenstein S

PDB-6bt3:
High-Resolution Structure Analysis of Antibody V5 Conformational Epitope on Human Papillomavirus 16
Method: single particle / : Guan J, Bywaters SM, Brendle SA, Ashley RE, Makhov AM, Conway JF, Christensen ND, Hafenstein S

PDB-5kep:
High resolution cryo-EM maps of Human Papillomavirus 16 reveal L2 location and heparin-induced conformational changes
Method: single particle / : Guan J, Bywaters SM, Brendle SA, Ashley RE, Makhov AM, Conway JF, Christensen ND, Hafenstein S

PDB-5keq:
High resolution cryo-EM maps of Human papillomavirus 16 reveal L2 location and heparin-induced conformational changes
Method: single particle / : Guan J, Bywaters SM, Brendle SA, Ashley RE, Makhov AM, Conway JF, Christensen ND, Hafenstein S

PDB-3jd7:
The novel asymmetric entry intermediate of a picornavirus captured with nanodiscs
Method: single particle / : Lee H, Shingler KL, Organtini LJ, Ashley RE, Makhov AM, Conway JF, Hafenstein S

PDB-3jcx:
Canine Parvovirus complexed with Fab E
Method: single particle / : Organtini LJ, Iketani S, Huang K, Ashley RE, Makhov AM, Conway JF, Parrish CR, Hafenstein S

PDB-3jba:
The U4 antibody epitope on human papillomavirus 16 identified by cryo-EM
Method: single particle / : Guan J, Bywaters SM, Brendle SA, Lee H, Ashley RE, Christensen ND, Hafenstein S

PDB-3j8v:
Cryo-EM reconstruction of quasi-HPV16 complex with H16.14J Fab
Method: single particle / : Guan J, Hafenstein S

PDB-3j8w:
Cryo-EM reconstruction of quasi-HPV16 complex with H263.A2 Fab
Method: single particle / : Guan J, Hafenstein S

PDB-3j8z:
Cryo-EM reconstruction of quasi-HPV16 complex with H16.1A Fab
Method: single particle / : Guan J, Hafenstein S

PDB-3j93:
Fitting of Fab into the cryoEM density map of EV71 procapsid in complex with Fab22A12
Method: single particle / : Shingler KL, Cifuente JO, Ashley RE, Makhov AM, Conway JF, Hafenstein S

PDB-3j91:
Cryo-electron microscopy of Enterovirus 71 (EV71) procapsid in complex with Fab fragments of neutralizing antibody 22A12
Method: single particle / : Shingler KL, Cifuente JO, Ashley RE, Makhov AM, Conway JF, Hafenstein S

PDB-3j7e:
Electron cryo-microscopy of human papillomavirus 16 and H16.V5 Fab fragments
Method: single particle / : Lee H, Brendle SA, Bywaters SM, Christensen ND, Hafenstein S

PDB-3j7g:
Electron cryo-microscopy of human papillomavirus 16 and H16.V5 Fab fragments
Method: single particle / : Lee H, Hafenstein S

PDB-3j6l:
Kinetic and Structural Analysis of Coxsackievirus B3 Receptor Interactions and Formation of the A-particle
Method: single particle / : Organtini LJ, Makhov AM, Conway JF, Hafenstein S, Carson SD

PDB-3j6m:
Kinetic and Structural Analysis of Coxsackievirus B3 Receptor Interactions and Formation of the A-particle
Method: single particle / : Organtini LJ, Makhov AM, Conway JF, Hafenstein S, Carson SD

PDB-3j6n:
Kinetic and Structural Analysis of Coxsackievirus B3 Receptor Interactions and Formation of the A-particle
Method: single particle / : Organtini LJ, Makhov AM, Conway JF, Hafenstein S, Carson SD

PDB-3j6o:
Kinetic and Structural Analysis of Coxsackievirus B3 Receptor Interactions and Formation of the A-particle
Method: single particle / : Organtini LJ, Makhov AM, Conway JF, Hafenstein S, Carson SD

PDB-3j3z:
Structure of MA28-7 neutralizing antibody Fab fragment from electron cryo-microscopy of enterovirus 71 complexed with a Fab fragment
Method: single particle / : Lee H, Cifuente JO, Ashley RE, Conway JF, Makhov AM, Tano Y, Shimizu H, Nishimura Y, Hafenstein S

PDB-3j24:
CryoEM reconstruction of complement decay-accelerating factor
Method: single particle / : Yoder JD, Hafenstein SH

PDB-3iyp:
The Interaction of Decay-accelerating Factor with Echovirus 7
Method: single particle / : Plevka P, Hafenstein S, Zhang Y, Harris KG, Cifuente JO, Bowman VD, Chipman PR, Lin F, Medof DE, Bator CM, Rossmann MG

PDB-3iy0:
Variable domains of the x-ray structure of Fab 14 fitted into the cryoEM reconstruction of the virus-Fab 14 complex
Method: single particle / : Hafenstein S, Bowman VD, Sun T, Nelson CD, Palermo LM, Chipman PR, Battisti AJ, Parrish CR, Rossmann MG

PDB-3iy1:
Variable domains of the WAM of Fab B fitted into the cryoEM reconstruction of the virus-Fab B complex
Method: single particle / : Hafenstein S, Bowman VD, Sun T, Nelson CD, Palermo LM, Battisti AJ, Parrish CR, Rossmann MG

PDB-3iy2:
Variable domains of the computer generated model (WAM) of Fab 6 fitted into the cryoEM reconstruction of the virus-Fab 6 complex
Method: single particle / : Hafenstein S, Bowman VD, Sun T, Nelson CD, Palermo LM, Chipman PR, Battisti AJ, Parrish CR, Rossmann MG

PDB-3iy3:
Variable domains of the computer generated model (WAM) of Fab 8 fitted into the cryoEM reconstruction of the virus-Fab 8 complex
Method: single particle / : Hafenstein S, Bowman VD, Sun T, Nelson CD, Palermo LM, Chipman PR, Battisti AJ, Parrish CR, Rossmann MG

PDB-3iy4:
Variable domains of the computer generated model (WAM) of Fab 15 fitted into the cryoEM reconstruction of the virus-Fab 15 complex
Method: single particle / : Hafenstein S, Bowman VD, Sun T, Nelson CD, Palermo LM, Chipman PR, Battisti AJ, Parrish CR, Rossmann MG

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more