[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 46 items for (author: gristick & hb)

EMDB-26491:
Cryo-EM structure of BG24 inferred germline Fabs with germline CDR3s and 10-1074 Fabs in complex with HIV-1 Env immunogen BG505-SOSIPv4.1-GT1 - Class 2
Method: single particle / : Dam KA, Bjorkman PJ

EMDB-26494:
Cryo-EM map of BG24 Fabs with an inferred germline light chain and 10-1074 Fabs in complex with HIV-1 Env immunogen BG505-SOSIPv4.1-GT1 containing the N276 gp120 glycan- Class 2
Method: single particle / : Dam KA, Bjorkman PJ

EMDB-26495:
Cryo-EM map of BG24 Fabs with an inferred germline light chain and 10-1074 Fabs in complex with HIV-1 Env immunogen BG505-SOSIPv4.1-GT1 containing the N276 gp120 glycan- Class 3
Method: single particle / : Dam KA, Bjorkman PJ

EMDB-26493:
Cryo-EM structure of BG24 Fabs with an inferred germline light chain and 10-1074 Fabs in complex with HIV-1 Env immunogen BG505-SOSIPv4.1-GT1 containing the N276 gp120 glycan- Class 1
Method: single particle / : Dam KA, Bjorkman PJ

EMDB-26496:
Cryo-EM structure of BG24 Fabs with an inferred germline CDRL1 and 10-1074 Fabs in complex with HIV-1 Env 6405-SOSIP.664
Method: single particle / : Dam KA, Bjorkman PJ

EMDB-26490:
Cryo-EM structure of BG24 inferred germline Fabs with germline CDR3s and 10-1074 Fabs in complex with HIV-1 Env immunogen BG505-SOSIPv4.1-GT1 - Class 1
Method: single particle / : Dam KA, Bjorkman PJ

EMDB-26492:
Cryo-EM structure of BG24 inferred germline Fabs with mature CDR3s and 10-1074 Fabs in complex with HIV-1 Env immunogen BG505-SOSIPv4.1-GT1
Method: single particle / : Dam KA, Bjorkman PJ

EMDB-24853:
Modified BG505 SOSIP-based immunogen RC1 in complex with elicited mAb Ab283MUR Fab and 8ANC195 Fab
Method: single particle / : Abernathy ME, Bjorkman PJ

EMDB-24854:
Modified BG505 SOSIP-based immunogen RC1 in complex with elicited mAb Ab1170NHP Fab and 8ANC195 Fab
Method: single particle / : Abernathy ME, Bjorkman PJ

EMDB-24855:
Modified BG505 SOSIP-based immunogen RC1 in complex with Rabbit 2249 post-Prime polyclonal Fabs
Method: single particle / : Barnes CO, DeLaitsch AT, Bjorkman PJ

EMDB-24856:
Modified BG505 SOSIP-based immunogen RC1 in complex with Rabbit 2249 post-Boost 1 polyclonal Fabs
Method: single particle / : DeLaitsch AT, Barnes CO, Bjorkman PJ

EMDB-24857:
Modified BG505 SOSIP-based immunogen RC1 in complex with Rabbit 2249 post-Boost 2 polyclonal Fabs
Method: single particle / : DeLaitsch AT, Barnes CO, Bjorkman PJ

EMDB-24858:
Modified BG505 SOSIP-based immunogen RC1 in complex with Rabbit 2249 post-Boost 3 polyclonal Fabs
Method: single particle / : DeLaitsch AT, Barnes CO, Bjorkman PJ

EMDB-24859:
Modified BG505 SOSIP-based immunogen RC1 in complex with Rabbit 2249 post-Boost 4 polyclonal Fabs
Method: single particle / : DeLaitsch AT, Barnes CO, Bjorkman PJ

EMDB-24860:
Modified BG505 SOSIP-based immunogen RC1 in complex with NHP 1 post-Prime polyclonal Fabs
Method: single particle / : DeLaitsch AT, Barnes CO, Bjorkman PJ

EMDB-24861:
Modified BG505 SOSIP-based immunogen RC1 in complex with NHP 1 post-Boost 1 polyclonal Fabs
Method: single particle / : DeLaitsch AT, Barnes CO, Bjorkman PJ

EMDB-25878:
Cryo-EM structure of HIV-1 Env trimer BG505 SOSIP.664 in complex with CD4bs antibody Ab1573
Method: single particle / : Yang Z, Bjorkman PJ

EMDB-25877:
Cryo-EM structure of CD4bs antibody Ab1303 in complex with HIV-1 Env trimer BG505 SOSIP.664
Method: single particle / : Yang Z, Bjorkman PJ

EMDB-24072:
Ab1245 Fab in complex with BG505 SOSIP.664 and 8ANC195 Fab
Method: single particle / : Abernathy ME, Bjorkman PJ

EMDB-22820:
BG505 SOSIP.664 in complex with the V3-targeting rhesus macaque antibody 1485 and human gp120-gp41 interface antibody 8ANC195
Method: single particle / : Barnes CO, Bjorkman PJ

EMDB-22729:
Structure of the SARS-CoV-2 S 2P trimer in complex with the human neutralizing antibody Fab fragment, C002 (state 1)
Method: single particle / : Barnes CO, Malyutin AG, Bjorkman PJ

EMDB-22730:
Structure of the SARS-CoV-2 S 6P trimer in complex with the human neutralizing antibody Fab fragment, C002 (State 2)
Method: single particle / : Malyutin AG, Barnes CO, Bjorkman PJ

EMDB-22731:
Structure of the SARS-CoV-2 S 6P trimer in complex with the human neutralizing antibody Fab fragment, C104
Method: single particle / : Barnes CO, Malyutin AG, Bjorkman PJ

EMDB-22732:
Structure of the SARS-CoV-2 S 2P trimer in complex with the human neutralizing antibody Fab fragment, C110
Method: single particle / : Dam KA, Barnes CO, Bjorkman PJ

EMDB-22733:
Structure of the SARS-CoV-2 S 2P trimer in complex with the human neutralizing antibody Fab fragment, C119
Method: single particle / : Sharaf NG, Barnes CO, Bjorkman PJ

EMDB-22734:
Structure of the SARS-CoV-2 S 2P trimer in complex with the human neutralizing antibody Fab fragment, C121 (State 1)
Method: single particle / : Abernathy ME, Barnes CO, Bjorkman PJ

EMDB-22735:
Structure of the SARS-CoV-2 S 2P trimer in complex with the human neutralizing antibody Fab fragment, C121 (State 2)
Method: single particle / : Abernathy ME, Barnes CO, Bjorkman PJ

EMDB-22736:
Structure of the SARS-CoV-2 S 2P trimer in complex with the human neutralizing antibody Fab fragment, C135
Method: single particle / : Barnes CO, Bjorkman PJ

EMDB-22737:
Structure of the SARS-CoV-2 S 6P trimer in complex with the human neutralizing antibody Fab fragment, C144
Method: single particle / : Barnes CO, Esswein SR, Bjorkman PJ

EMDB-22124:
SARS-CoV-2 S 2P negative-stain EM
Method: single particle / : Barnes CO, Bjorkman PJ

EMDB-22125:
SARS-CoV-2 S 2P trimer complexed with COV57 polyclonal Fabs
Method: single particle / : Barnes CO, Bjorkman PJ

EMDB-22126:
SARS-CoV-2 S 2P trimer complexed with polyclonal Fabs from recovered COVID-19 individual COV21
Method: single particle / : Barnes CO, Bjorkman PJ

EMDB-22127:
Structure of the SARS-CoV-2 spike glycoprotein in complex with the C105 neutralizing antibody Fab fragment (state 1)
Method: single particle / : Barnes CO, Bjorkman PJ

EMDB-22128:
Structure of the SARS-CoV-2 spike glycoprotein in complex with the C105 neutralizing antibody Fab fragment (state 2)
Method: single particle / : Barnes CO, Bjorkman PJ

EMDB-20739:
HIV-1 bNAb 1-18 in complex with BG505 SOSIP.664 and 10-1074
Method: single particle / : Abernathy ME, Barnes CO, Gristick HB, Bjorkman PJ

EMDB-20740:
HIV-1 bNAb 1-55 in complex with modified BG505 SOSIP-based immunogen RC1 and 10-1074
Method: single particle / : Abernathy ME, Barnes CO, Gristick HB, Bjorkman PJ

EMDB-21204:
BG505 SOSIP in complex with antibodies BG1 and 8ANC195
Method: single particle / : Wang H, Bjorkman PJ

EMDB-20605:
Asymmetrically open conformational state (Class I) of HIV-1 Env trimer BG505 SOSIP.664 in complex with sCD4 and E51 Fab
Method: single particle / : Yang Z, Bjorkman PJ

EMDB-20608:
Asymmetrically open conformational state (Class II) of HIV-1 Env trimer BG505 SOSIP.664 in complex with sCD4 and E51 Fab
Method: single particle / : Yang Z, Bjorkman PJ

EMDB-20175:
Modified BG505 SOSIP-based immunogen RC1 in complex with the elicited V3-glycan patch bNAb 10-1074
Method: single particle / : Abernathy ME, Gristick HB, Bjorkman PJ

EMDB-20176:
Modified BG505 SOSIP-based immunogen RC1 in complex with the elicited V3-glycan patch antibody Ab874NHP
Method: single particle / : Abernathy ME, Gristick HB, Bjorkman PJ

EMDB-20177:
Modified BG505 SOSIP-based immunogen RC1 in complex with the elicited V3-glycan patch antibody Ab897NHP
Method: single particle / : Abernathy ME, Gristick HB, Bjorkman PJ

EMDB-20178:
Modified BG505 SOSIP-based immunogen RC1 in complex with the elicited V3-glycan patch antibody Ab275MUR
Method: single particle / : Abernathy ME, Gristick HB, Bjorkman PJ

EMDB-8693:
BG505 SOSIP.664 in complex with broadly neutralizing antibodies BG1 and 8ANC195
Method: single particle / : Wang H, Bjorkman PJ

EMDB-8695:
BG505 SOSIP.664 in complex with broadly neutralizing antibodies PG9 and 8ANC195
Method: single particle / : Wang H, Bjorkman PJ

EMDB-8407:
Cryo-EM structure of a BG505 Env-sCD4-17b-8ANC195 complex
Method: single particle / : Wang H, Bjorkman PJ

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more