[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 34 items for (author: glickman & m)

EMDB-29912:
Cryo-EM 3D map of the Mycobacterium tuberculosis Hsp70 protein DnaK bound to the nucleotide exchange factor GrpE
Method: single particle / : Xiao X, Li H

EMDB-29913:
Cryo-EM 3D map of the Mycobacterium tuberculosis Hsp70 protein DnaK bound to the nucleotide exchange factor GrpE
Method: single particle / : Xiao X, Li H

EMDB-29914:
Cryo-EM 3D focused map of the Mycobacterium tuberculosis Hsp70 protein DnaK SBD domain
Method: single particle / : Xiao X, Li H

EMDB-13389:
human 20S proteasome (before post-processing)
Method: single particle / : Xu C, Cong Y

PDB-7pg9:
human 20S proteasome
Method: single particle / : Xu C, Cong Y

EMDB-31724:
20S+monoUb-CyclinB1-NT (S1)
Method: single particle / : Xu C, Cong Y

EMDB-31727:
20S+monoUb-CyclinB1-NT (S2)
Method: single particle / : Xu C, Cong Y

EMDB-31728:
20S proteasome incubated with monoUb-CyclinB1-NT (S0)
Method: single particle / : Xu C, Cong Y

EMDB-31730:
20S proteasome (after post-processing)
Method: single particle / : Xu C, Cong Y

PDB-7v5g:
20S+monoUb-CyclinB1-NT (S1)
Method: single particle / : Xu C, Cong Y

PDB-7v5m:
20S+monoUb-CyclinB1-NT (S2)
Method: single particle / : Xu C, Cong Y

EMDB-21553:
Cryo-EM map of the Mycobacterium tuberculosis ClpB disaggregase hexamer with a locally refined ClpB middle domain and a DnaK nucleotide binding domain
Method: single particle / : Yin Y, Li H

EMDB-21555:
Cryo-EM map of the Mycobacterium tuberculosis ClpB disaggregase hexamer in conformation II in the presence of DnaK chaperone and a model substrate
Method: single particle / : Yin Y, Li H

EMDB-21556:
Cryo-EM map of the Mycobacterium tuberculosis ClpB disaggregase hexamer in conformation T in the presence of DnaK chaperone and a model substrate
Method: single particle / : Yin Y, Li H

EMDB-21557:
Cryo-EM map of the Mycobacterium tuberculosis ClpB disaggregase hexamer with a locally refined N-terminal domain in the presence of DnaK chaperone and a model substrate
Method: single particle / : Yin Y, Li H

EMDB-23206:
CryoEM map of the Mycobacterium tuberculosis ClpB disaggregase hexamer with three locally refined ClpB middle domains and three DnaK nucleotide binding domains
Method: single particle / : Yin YY, Feng X, Li H

PDB-6w6e:
The Mycobacterium tuberculosis ClpB disaggregase hexamer structure with a locally refined ClpB middle domain and a DnaK nucleotide binding domain
Method: single particle / : Yin Y, Li H

PDB-6w6h:
The Mycobacterium tuberculosis ClpB disaggregase hexamer structure in conformation II in the presence of DnaK chaperone and a model substrate
Method: single particle / : Yin Y, Li H

PDB-6w6i:
The Mycobacterium tuberculosis ClpB disaggregase hexamer structure in conformation T in the presence of DnaK chaperone and a model substrate
Method: single particle / : Yin Y, Li H

PDB-6w6j:
The Mycobacterium tuberculosis ClpB disaggregase hexamer structure with a locally refined N-terminal domain in the presence of DnaK chaperone and a model substrate
Method: single particle / : Yin Y, Li H

PDB-7l6n:
The Mycobacterium tuberculosis ClpB disaggregase hexamer structure with three locally refined ClpB middle domains and three DnaK nucleotide binding domains
Method: single particle / : Yin YY, Feng X, Li H

EMDB-21554:
Cryo-EM map of the Mycobacterium tuberculosis ClpB disaggregase hexamer in conformation I in the presence of DnaK chaperone and a model substrate
Method: single particle / : Yin Y, Li H

PDB-6w6g:
The Mycobacterium tuberculosis ClpB disaggregase hexamer structure in conformation I in the presence of DnaK chaperone and a model substrate
Method: single particle / : Yin Y, Li H

EMDB-9770:
yeast proteasome in substrate-processing state (C3-b)
Method: single particle / : Cong Y

EMDB-9773:
yeast proteasome in Ub-engaged state (C2)
Method: single particle / : Cong Y

PDB-6j2n:
yeast proteasome in substrate-processing state (C3-b)
Method: single particle / : Cong Y

PDB-6j30:
yeast proteasome in Ub-engaged state (C2)
Method: single particle / : Cong Y

EMDB-9769:
Yeast proteasome in translocation competent state (C3-a)
Method: single particle / : Cong Y

EMDB-9771:
Yeast proteasome in Ub-accepted state (C1-b)
Method: single particle / : Cong Y

EMDB-9772:
Yeast proteasome in resting state (C1-a)
Method: single particle / : Cong Y

PDB-6j2c:
Yeast proteasome in translocation competent state (C3-a)
Method: single particle / : Cong Y

PDB-6j2q:
Yeast proteasome in Ub-accepted state (C1-b)
Method: single particle / : Cong Y

PDB-6j2x:
Yeast proteasome in resting state (C1-a)
Method: single particle / : Cong Y

EMDB-2026:
Structure of the proteasome subunit Rpn1
Method: single particle / : He J, Kulkarni K, daFonseca P, Krutauz D, Glickman M, Barford D, Morris E

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more