[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 42 items for (author: fujii & t)

EMDB-35448:
Overlapping tri-nucleosome
Method: single particle / : Nishimura M, Fujii T, Tanaka H, Maehara K, Nozawa K, Takizawa Y, Ohkawa Y, Kurumizaka H

PDB-8ihl:
Overlapping tri-nucleosome
Method: single particle / : Nishimura M, Fujii T, Tanaka H, Maehara K, Nozawa K, Takizawa Y, Ohkawa Y, Kurumizaka H

EMDB-32588:
The Cryo-EM structure of siphonaxanthin chlorophyll a/b type light-harvesting complex II
Method: single particle / : Seki S, Nakaniwa T, Castro-Hartmann P, Sader K, Kawamoto A, Tanaka H, Qian P, Kurisu G, Fujii R

PDB-7wlm:
The Cryo-EM structure of siphonaxanthin chlorophyll a/b type light-harvesting complex II
Method: single particle / : Seki S, Nakaniwa T, Castro-Hartmann P, Sader K, Kawamoto A, Tanaka H, Qian P, Kurisu G, Fujii R

EMDB-32381:
Trichodesmium erythraeum cyanophycin synthetase 1 (TeCphA1)
Method: single particle / : Kawasaki M, Miyakawa T, Yang J, Adachi N, Fujii A, Miyauchi Y, Muramatsu T, Moriya T, Senda T, Tanokura M

EMDB-32382:
Trichodesmium erythraeum cyanophycin synthetase 1 (TeCphA1) with ATPgammaS
Method: single particle / : Kawasaki M, Miyakawa T, Yang J, Adachi N, Fujii A, Miyauchi Y, Muramatsu T, Moriya T, Senda T, Tanokura M

EMDB-32383:
Trichodesmium erythraeum cyanophycin synthetase 1 (TeCphA1) with ATPgammaS, 4x(beta-Asp-Arg), and aspartate
Method: single particle / : Miyakawa T, Yang J, Kawasaki M, Adachi N, Fujii A, Miyauchi Y, Muramatsu T, Moriya T, Senda T, Tanokura M

EMDB-32384:
Trichodesmium erythraeum cyanophycin synthetase 1 (TeCphA1) with ATPgammaS and 4x(beta-Asp-Arg)
Method: single particle / : Miyakawa T, Yang J, Kawasaki M, Adachi N, Fujii A, Miyauchi Y, Muramatsu T, Moriya T, Senda T, Tanokura M

PDB-7wac:
Trichodesmium erythraeum cyanophycin synthetase 1 (TeCphA1)
Method: single particle / : Kawasaki M, Miyakawa T, Yang J, Adachi N, Fujii A, Miyauchi Y, Muramatsu T, Moriya T, Senda T, Tanokura M

PDB-7wad:
Trichodesmium erythraeum cyanophycin synthetase 1 (TeCphA1) with ATPgammaS
Method: single particle / : Kawasaki M, Miyakawa T, Yang J, Adachi N, Fujii A, Miyauchi Y, Muramatsu T, Moriya T, Senda T, Tanokura M

PDB-7wae:
Trichodesmium erythraeum cyanophycin synthetase 1 (TeCphA1) with ATPgammaS, 4x(beta-Asp-Arg), and aspartate
Method: single particle / : Miyakawa T, Yang J, Kawasaki M, Adachi N, Fujii A, Miyauchi Y, Muramatsu T, Moriya T, Senda T, Tanokura M

PDB-7waf:
Trichodesmium erythraeum cyanophycin synthetase 1 (TeCphA1) with ATPgammaS and 4x(beta-Asp-Arg)
Method: single particle / : Miyakawa T, Yang J, Kawasaki M, Adachi N, Fujii A, Miyauchi Y, Muramatsu T, Moriya T, Senda T, Tanokura M

EMDB-0869:
Cryo-EM structure of the MgtE Mg2+ channel under Mg2+-free conditions
Method: single particle / : Hattori M, Jin F

PDB-6lbh:
Cryo-EM structure of the MgtE Mg2+ channel under Mg2+-free conditions
Method: single particle / : Hattori M, Jin F

EMDB-11562:
Mouse Hoxa9 IRES like element bound to the human 80S ribosome
Method: single particle / : Boehringer D, Lenarcic T, Quade N, Leppek K, Fujii K, Susanto TT, Xue S, Genuth NR, Barna M, Ban N

EMDB-11563:
Mouse Hoxa9 IRES-like element bound to the human 40S ribosomal subunit head - IRES binding site
Method: single particle / : Boehringer D, Lenarcic T, Quade N, Leppek K, Fujii K, Susanto TT, Xue S, Genuth NR, Barna M, Ban N

EMDB-11564:
Mouse Hoxa9 IRES-like element bound to the human 40S ribosomal subunit - 40S head
Method: single particle / : Boehringer D, Lenarcic T, Quade N, Leppek K, Fujii K, Susanto TT, Xue S, Genuth NR, Barna M, Ban N

EMDB-11565:
Mouse Hoxa9 IRES-like element bound to the human 40S ribosomal subunit - 40S body
Method: single particle / : Boehringer D, Lenarcic T, Quade N, Leppek K, Fujii K, Susanto TT, Xue S, Genuth NR, Barna M, Ban N

EMDB-11566:
Hoxa9 IRES P4 stem-loop bound to the 40S ribosomal subunit - 40S head
Method: single particle / : Lenarcic T, Boehringer D, Leppek K, Quade N, Fujii K, Susanto TT, Xue S, Genuth NR, Barna M, Ban N

EMDB-11567:
Hoxa9 IRES P4 stem-loop bound to the 40S ribosomal subunit - 40S body
Method: single particle / : Lenarcic T, Boehringer D, Leppek K, Quade N, Fujii K, Susanto TT, Xue S, Genuth NR, Barna M, Ban N

EMDB-11568:
human 40S ribosomal subunit (control)
Method: single particle / : Lenarcic T, Boehringer D, Leppek K, Quade N, Fujii K, Susanto TT, Xue S, Genuth NR, Barna M, Ban N

EMDB-0728:
Structure of human cardiac thin filament in the calcium free state
Method: single particle / : Fujii T, Yamada Y

EMDB-0729:
Structure of human cardiac thin filament in the calcium bound state
Method: single particle / : Fujii T, Yamada Y

PDB-6kn7:
Structure of human cardiac thin filament in the calcium free state
Method: single particle / : Fujii T, Yamada Y, Namba K

PDB-6kn8:
Structure of human cardiac thin filament in the calcium bound state
Method: single particle / : Fujii T, Yamada Y, Namba K

EMDB-6683:
The 7 angstrom resolution CryoEM map of the bacterial flagellar polyrod
Method: helical / : Fujii T, Namba K

PDB-5wrh:
FlgG structure based on the CryoEM map of the bacterial flagellar polyrod
Method: helical / : Fujii T, Namba K

EMDB-6664:
The structure of rabbit skeletal muscle actomyosin rigor complex at 5.2 angstrom.
Method: helical / : Fujii T, Namba K

PDB-5h53:
The structure of rabbit skeletal muscle actomyosin rigor complex at 5.2 angstrom.
Method: helical / : Fujii T, Namba K

EMDB-6102:
Electron cryo-microscopy of DNGR-1 in complex with F-actin
Method: single particle / : Hanc P, Fujii T, Yamada Y, Huotari J, Schulz O, Ahrens S, Kjaer S, Way M, Namba K, Reis e Sousa C

PDB-3j82:
Electron cryo-microscopy of DNGR-1 in complex with F-actin
Method: single particle / : Hanc P, Fujii T, Yamada Y, Huotari J, Schulz O, Ahrens S, Kjaer S, Way M, Namba K, Reis e Sousa C

EMDB-2929:
Mechanism of Ubiquitin Ligation to a Substrate by human Anaphase-Promoting Complex
Method: single particle / : Brown N, VanderLinden R, Watson E, Qiao R, Grace CR, Yamaguchi M, Weissmann F, Frye J, Dube P, Cho SE, Actis M, Rodrigues P, Fujii N, Peters JM, Schulman BA, Stark H

EMDB-5931:
Dictyostelium dynein microtubule binding domain bound to a 15-protofilament microtubule
Method: helical / : Uchimura S, Fujii T, Takazaki H, Ayukawa R, Nishikawa Y, Minoura I, Hachikubo Y, Kurisu G, Sutoh K, Kon T, Namba K, Muto E

PDB-3j6p:
Pseudo-atomic model of dynein microtubule binding domain-tubulin complex based on a cryoEM map
Method: helical / : Uchimura S, Fujii T, Takazaki H, Ayukawa R, Nishikawa Y, Minoura I, Hachikubo Y, Kurisu G, Sutoh K, Kon T, Namba K, Muto E

PDB-4a6j:
Structural model of ParM filament based on CryoEM map
Method: single particle / : Gayathri P, Fujii T, Moller-Jensen J, Van Den Ent F, Namba K, Lowe J

EMDB-1980:
CryoEM map of ParM filament at 7.2 Angstrom resolution
Method: helical / : Gayathri P, Fujii T, Moller-Jensen J, van den Ent F, Namba K, Lowe J

PDB-3j0r:
Model of a type III secretion system needle based on a 7 Angstrom resolution cryoEM map
Method: helical / : Fujii T, Cheung M, Blanco A, Kato T, Blocker AJ, Namba K

EMDB-5352:
Structure of a type III secretion needle
Method: helical / : Fujii T, Cheung M, Blanco A, Kato T, Blocker AJ, Namba K

PDB-3mfp:
Atomic model of F-actin based on a 6.6 angstrom resolution cryoEM map
Method: helical / : Fujii T, Iwane AH, Yanagida T, Namba K

EMDB-5168:
Direct visualization of secondary structures of F-actin by electron cryomicroscopy
Method: helical / : Fujii T, Iwane AH, Yanagida T, Namba K

PDB-3a69:
Atomic model of the bacterial flagellar hook based on docking an X-ray derived structure and terminal two alpha-helices into an 7.1 angstrom resolution cryoEM map
Method: helical / : Fujii T, Kato T, Namba K

EMDB-1647:
Specific arrangement of alpha-helical coiled coils in the core domain of the bacterial flagellar hook for the universal joint function
Method: helical / : Fujii T, Kato T, Namba K

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more