[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 751 items for (author: f. & yan)

PDB-8iaz:
Cryo-EM structure of the ISFba1 TnpB-reRNA-dsDNA complex
Method: single particle / : Yin M, Zhou F, Zhu Y, Huang Z

PDB-8gyo:
Inner channel lipids regulated gating mechanism of human pannexins.
Method: single particle / : Cong Y, Jin X, Kong F, Yan C

PDB-8gyp:
Cryo-EM structure of human Pannexin-3 in closed state.
Method: single particle / : Cong Y, Jin X, Kong F, Yan C

PDB-8gyq:
Cryo-EM structure of human Pannexin-2 in pre-open state.
Method: single particle / : Cong Y, Jin X, Kong F, Yan C

PDB-8gyt:
Cryo-EM structure of human Pannexin-3 R36S/F40R variant in pre-open state.
Method: single particle / : Cong Y, Jin X, Kong F, Wu T, Yan C

PDB-8iog:
Cryo-EM structure of porcine bc1 complex in isolated state
Method: single particle / : Wang YX, Dong JQ, Yang GF

PDB-8xn4:
Cryo-EM structure of the ClpP degradation system in Streptomyces hawaiiensis
Method: single particle / : Xu X, Long F

PDB-8xon:
Cryo-EM structure of the ClpC1:ClpP1P2 degradation complex in Streptomyces hawaiiensis
Method: single particle / : Xu X, Long F

PDB-8xoo:
Cryo-EM structure of the ClpC1:ClpP1P2 degradation complex in Streptomyces hawaiiensis
Method: single particle / : Xu X, Long F

PDB-8xop:
Cryo-EM structure of ClpP1P2 in complex with ADEP1 from Streptomyces hawaiiensis
Method: single particle / : Xu X, Long F

PDB-8jts:
hOCT1 in complex with metformin in outward open conformation
Method: single particle / : Zhang S, Zhu A, Kong F, Chen J, Lan B, He G, Gao K, Cheng L, Yan C, Chen L, Liu X

PDB-8jtt:
hOCT1 in complex with metformin in outward occluded conformation
Method: single particle / : Zhang S, Zhu A, Kong F, Chen J, Lan B, He G, Gao K, Cheng L, Yan C, Chen L, Liu X

PDB-8jtv:
hOCT1 in complex with metformin in inward occluded conformation
Method: single particle / : Zhang S, Zhu A, Kong F, Chen J, Lan B, He G, Gao K, Cheng L, Yan C, Chen L, Liu X

PDB-8jtw:
hOCT1 in complex with nb5660 in inward facing partially open 1 conformation
Method: single particle / : Zhang S, Zhu A, Kong F, Chen J, Lan B, He G, Gao K, Cheng L, Yan C, Chen L, Liu X

PDB-8jtx:
hOCT1 in complex with nb5660 in inward facing fully open conformation
Method: single particle / : Zhang S, Zhu A, Kong F, Chen J, Lan B, He G, Gao K, Cheng L, Yan C, Chen L, Liu X

PDB-8jty:
hOCT1 in complex with nb5660 in inward facing partially open 2 conformation
Method: single particle / : Zhang S, Zhu A, Kong F, Chen J, Lan B, He G, Gao K, Cheng L, Yan C, Chen L, Liu X

PDB-8jtz:
hOCT1 in complex with spironolactone in outward facing partially occluded conformation
Method: single particle / : Zhang S, Zhu A, Kong F, Chen J, Lan B, He G, Gao K, Cheng L, Yan C, Chen L, Liu X

PDB-8ju0:
hOCT1 in complex with spironolactone in inward facing occluded conformation
Method: single particle / : Zhang S, Zhu A, Kong F, Chen J, Lan B, He G, Gao K, Cheng L, Yan C, Chen L, Liu X

PDB-8hk7:
Structure of PKD2-F604P (Polycystin-2, TRPP2) with ML-SA1
Method: single particle / : Chen MY, Su Q, Wang ZF, Yu Y

PDB-8su9:
E. coli SIR2-HerA complex (hexamer HerA bound with dodecamer Sir2)
Method: single particle / : Shen ZF, Lin QP, Fu TM

PDB-8suw:
E. coli SIR2-HerA complex (dodecamer SIR2 bound 4 protomers of HerA)
Method: single particle / : Shen ZF, Lin QP, Fu TM

PDB-8gel:
Cryo-EM structure of synthetic tetrameric building block sC4
Method: single particle / : Redler RL, Huddy TF, Hsia Y, Baker D, Ekiert D, Bhabha G

PDB-8oqi:
Cryo-EM structure of the wild-type alpha-synuclein fibril.
Method: helical / : Pesch V, Reithofer S, Ma L, Flores-Fernandez JM, Oezduezenciler P, Busch Y, Lien Y, Rudtke O, Frieg B, Schroeder GF, Wille H, Tamgueney G

PDB-8wa3:
Cryo-EM structure of peptide free and Gs-coupled GIPR
Method: single particle / : Cong ZT, Zhao FH, Li Y, Luo G, Zhou QT, Yang DH, Wang MW

PDB-8wg7:
Cryo-EM structures of peptide free and Gs-coupled GLP-1R
Method: single particle / : Cong ZT, Zhao FH, Li Y, Luo G, Zhou QT, Yang DH, Wang MW

PDB-8wg8:
Cryo-EM structures of peptide free and Gs-coupled GCGR
Method: single particle / : Cong ZT, Zhao FH, Li Y, Luo G, Zhou QT, Yang DH, Wang MW

PDB-8jbf:
Senktide bound to active human neurokinin 3 receptor in complex with Gq
Method: single particle / : Sun WJ, Yang F, Zhang HH, Yuan QN, Yin WC, Shi P, Eric X, Tian CL

PDB-8k8j:
Cannabinoid Receptor 1 bound to Fenofibrate coupling MiniGsq and Nb35 Complex
Method: single particle / : Tang WQ, Wang TX, Li FH, Wang JY

PDB-8szf:
Cryo-EM structure of cinacalcet-bound active-state human calcium-sensing receptor CaSR in lipid nanodiscs
Method: single particle / : He F, Wu C, Gao Y, Skiniotis G

PDB-8szg:
Cryo-EM structure of cinacalcet-bound human calcium-sensing receptor CaSR-Gq complex in lipid nanodiscs
Method: single particle / : He F, Wu C, Gao Y, Skiniotis G

PDB-8szh:
Cryo-EM structure of cinacalcet-bound human calcium-sensing receptor CaSR-Gi complex in lipid nanodiscs
Method: single particle / : He F, Wu C, Gao Y, Skiniotis G

PDB-8szi:
Cryo-EM structure of PAM-free human calcium-sensing receptor CaSR-Gi complex in lipid nanodiscs
Method: single particle / : He F, Wu C, Gao Y, Skiniotis G

PDB-8jbg:
Neurokinin B bound to active human neurokinin 3 receptor in complex with Gq
Method: single particle / : Sun WJ, Yang F, Zhang HH, Yuan QN, Yin WC, Shi P, Eric X, Tian CL

PDB-8jbh:
Substance P bound to active human neurokinin 3 receptor in complex with Gq
Method: single particle / : Sun WJ, Yang F, Zhang HH, Yuan QN, Yin WC, Shi P, Eric X, Tian CL

PDB-8xb8:
The structure of ASFV A137R
Method: single particle / : Li C, Song H, Gao GF

PDB-8q72:
E. coli plasmid-borne JetABCD(E248A) core in a cleavage-competent state
Method: single particle / : Roisne-Hamelin F, Li Y, Gruber S

PDB-8ka8:
Cryo-EM structure of SARS-CoV-2 Delta RBD in complex with golden hamster ACE2 (local refinement)
Method: single particle / : Niu S, Zhao ZN, Chai Y, Gao GF

PDB-8kc2:
Cryo-EM structure of SARS-CoV-2 BA.3 RBD in complex with golden hamster ACE2 (local refinement)
Method: single particle / : Niu S, Zhao ZN, Chai Y, Gao GF

PDB-8hp9:
Cryo-EM structure of SARS-CoV-2 Omicron BA.2 S-trimer in complex with fab L4.65 and L5.34
Method: single particle / : Gao GF, Liu S

PDB-8hpq:
Cryo-EM structure of SARS-CoV-2 Omicron BA.4 S-trimer in complex with fab L4.65 and L5.34
Method: single particle / : Gao GF, Liu S

PDB-8hpv:
Cryo-EM structure of SARS-CoV-2 Omicron Prototype S-trimer in complex with fab L4.65 and L5.34
Method: single particle / : Gao GF, Liu S

PDB-8ve0:
Human transthyretin covalently modified with A2-derived stilbene in the compressed conformation
Method: single particle / : Basanta B, Nugroho K, Yan N, Kline GM, Tsai FJ, Wu M, Kelly JW, Lander GC

PDB-8ivq:
Cryo-EM structure of mouse BIRC6, Global map
Method: single particle / : Liu S, Jiang T, Bu F, Zhao J, Wang G, Li N, Gao N, Qiu X

PDB-8jkz:
Cryo-EM structure of the prokaryotic SPARSA system complex
Method: single particle / : Xu X, Zhen X, Long F

PDB-8jl0:
Cryo-EM structure of the prokaryotic SPARSA system complex
Method: single particle / : Xu X, Zhen X, Long F

PDB-8sux:
Structure of E. coli PtuA hexamer
Method: single particle / : Shen ZF, Yang XY, Fu TM

PDB-8jgb:
CryoEM structure of Gi-coupled MRGPRX1 with peptide agonist CNF-Tx2
Method: single particle / : Sun JP, Xu HE, Yang F, Liu ZM, Guo LL, Zhang YM, Fang GX, Tie L, Zhuang YM, Xue CY

PDB-8jgf:
CryoEM structure of Gq-coupled MRGPRX1 with peptide agonist BAM8-22
Method: single particle / : Sun JP, Xu HE, Yang F, Liu ZM, Guo LL, Zhang YM, Fang GX, Tie L, Zhuang YM, Xue CY

PDB-8jgg:
CryoEM structure of Gi-coupled MRGPRX1 with peptide agonist BAM8-22
Method: single particle / : Sun JP, Xu HE, Ynag F, Liu ZM, Guo LL, Zhang YM, Fang GX, Tie L, Zhuang YM, Xue CY

PDB-8ee4:
Structure of PtuA
Method: single particle / : Shen ZF, Fu TM

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more