[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 472 items for (author: ding & f)

EMDB-35461:
Protomer 1 and 2 of the asymmetry trimer of the Cul2-Rbx1-EloBC-FEM1B ubiquitin ligase complex
Method: single particle / : Dai Z, Liang L, Yin YX

EMDB-36182:
An asymmetry dimer of the Cul2-Rbx1-EloBC-FEM1B ubiquitin ligase complexed with BEX2
Method: single particle / : Dai Z, Liang L, Yin YX

EMDB-36183:
Cryo-EM structure of neddylated Cul2-Rbx1-EloBC-FEM1B complexed with FNIP1-FLCN
Method: single particle / : Dai Z, Liang L, Yin YX

PDB-8ij1:
Protomer 1 and 2 of the asymmetry trimer of the Cul2-Rbx1-EloBC-FEM1B ubiquitin ligase complex
Method: single particle / : Dai Z, Liang L, Yin YX

PDB-8je1:
An asymmetry dimer of the Cul2-Rbx1-EloBC-FEM1B ubiquitin ligase complexed with BEX2
Method: single particle / : Dai Z, Liang L, Yin YX

PDB-8je2:
Cryo-EM structure of neddylated Cul2-Rbx1-EloBC-FEM1B complexed with FNIP1-FLCN
Method: single particle / : Dai Z, Liang L, Yin YX

EMDB-35678:
Apo state of Arabidopsis AZG1 at pH 7.4
Method: single particle / : Xu L, Guo J

EMDB-35679:
Endogenous substrate adenine bound state of Arabidopsis AZG1 at pH 5.5
Method: single particle / : Xu L, Guo J

EMDB-35680:
6-BAP bound state of Arabidopsis AZG1
Method: single particle / : Xu L, Guo J

EMDB-35681:
trans-Zeatin bound state of Arabidopsis AZG1 at pH7.4
Method: single particle / : Xu L, Guo J

EMDB-35682:
kinetin bound state of Arabidopsis AZG1
Method: single particle / : Xu L, Guo J

EMDB-37658:
trans-Zeatin bound state of Arabidopsis AZG1 at pH5.5
Method: single particle / : Xu L, Guo J

PDB-8irl:
Apo state of Arabidopsis AZG1 at pH 7.4
Method: single particle / : Xu L, Guo J

PDB-8irm:
Endogenous substrate adenine bound state of Arabidopsis AZG1 at pH 5.5
Method: single particle / : Xu L, Guo J

PDB-8irn:
6-BAP bound state of Arabidopsis AZG1
Method: single particle / : Xu L, Guo J

PDB-8iro:
trans-Zeatin bound state of Arabidopsis AZG1 at pH7.4
Method: single particle / : Xu L, Guo J

PDB-8irp:
kinetin bound state of Arabidopsis AZG1
Method: single particle / : Xu L, Guo J

PDB-8wmq:
trans-Zeatin bound state of Arabidopsis AZG1 at pH5.5
Method: single particle / : Xu L, Guo J

EMDB-37681:
Apo state of Arabidopsis AZG1 T440Y
Method: single particle / : Xu L, Guo J

PDB-8wo7:
Apo state of Arabidopsis AZG1 T440Y
Method: single particle / : Xu L, Guo J

EMDB-35703:
Cryo-EM structure of Crt-SPARTA-gRNA-tDNA tetramer (NADase active form)
Method: single particle / : Gao X, Shang K, Zhu K, Wang L, Mu Z, Fu X, Yu X, Qin B, Zhu H, Ding W, Cui S

PDB-8it1:
Cryo-EM structure of Crt-SPARTA-gRNA-tDNA tetramer (NADase active form)
Method: single particle / : Gao X, Shang K, Zhu K, Wang L, Mu Z, Fu X, Yu X, Qin B, Zhu H, Ding W, Cui S

EMDB-35700:
Cryo-EM structure of free-state Crt-SPARTA
Method: single particle / : Gao X, Shang K, Zhu K, Wang L, Mu Z, Fu X, Yu X, Qin B, Zhu H, Ding W, Cui S

EMDB-35701:
Cryo-EM structure of Crt-SPARTA-gRNA-tDNA monomer
Method: single particle / : Gao X, Shang K, Zhu K, Wang L, Mu Z, Fu X, Yu X, Qin B, Zhu H, Ding W, Cui S

EMDB-35702:
Cryo-EM structure of Crt-SPARTA-gRNA-tDNA dimer (conformation-2)
Method: single particle / : Gao X, Shang K, Zhu K, Wang L, Mu Z, Fu X, Yu X, Qin B, Zhu H, Ding W, Cui S

EMDB-36986:
Cryo-EM structure of Crt-SPARTA-gRNA-tDNA dimer (conformation-1)
Method: single particle / : Gao X, Shang K, Zhu K, Wang L, Mu Z, Fu X, Yu X, Qin B, Zhu H, Ding W, Cui S

PDB-8isy:
Cryo-EM structure of free-state Crt-SPARTA
Method: single particle / : Gao X, Shang K, Zhu K, Wang L, Mu Z, Fu X, Yu X, Qin B, Zhu H, Ding W, Cui S

PDB-8isz:
Cryo-EM structure of Crt-SPARTA-gRNA-tDNA monomer
Method: single particle / : Gao X, Shang K, Zhu K, Wang L, Mu Z, Fu X, Yu X, Qin B, Zhu H, Ding W, Cui S

PDB-8it0:
Cryo-EM structure of Crt-SPARTA-gRNA-tDNA dimer (conformation-2)
Method: single particle / : Gao X, Shang K, Zhu K, Wang L, Mu Z, Fu X, Yu X, Qin B, Zhu H, Ding W, Cui S

PDB-8k9g:
Cryo-EM structure of Crt-SPARTA-gRNA-tDNA dimer (conformation-1)
Method: single particle / : Gao X, Shang K, Zhu K, Wang L, Mu Z, Fu X, Yu X, Qin B, Zhu H, Ding W, Cui S

EMDB-34948:
Cryo-EM structure of the apo-GPR132-Gi
Method: single particle / : Wang JL, Ding JH, Sun JP, Yu X

EMDB-34950:
Activation mechanism of GPR132 by NPGLY
Method: single particle / : Wang JL, Ding JH, Sun JP, Yu X

EMDB-34951:
Activation mechanism of GPR132 by 9(S)-HODE
Method: single particle / : Wang JL, Ding JH, Sun JP, Yu X

EMDB-35044:
Activation mechanism of GPR132 by compound NOX-6-7
Method: single particle / : Wang JL, Ding JH, Sun JP, Yu X

PDB-8hqe:
Cryo-EM structure of the apo-GPR132-Gi
Method: single particle / : Wang JL, Ding JH, Sun JP, Yu X

PDB-8hqm:
Activation mechanism of GPR132 by NPGLY
Method: single particle / : Wang JL, Ding JH, Sun JP, Yu X

PDB-8hqn:
Activation mechanism of GPR132 by 9(S)-HODE
Method: single particle / : Wang JL, Ding JH, Sun JP, Yu X

PDB-8hvi:
Activation mechanism of GPR132 by compound NOX-6-7
Method: single particle / : Wang JL, Ding JH, Sun JP, Yu X

EMDB-36751:
Outward_facing SLC15A4 monomer
Method: single particle / : Zhang SS, Chen XD, Xie M

EMDB-36752:
Outward-facing SLC15A4 dimer
Method: single particle / : Zhang SS, Chen XD, Xie M

EMDB-36753:
SLC15A4_TASL complex
Method: single particle / : Zhang SS, Chen XD, Xie M

PDB-8jzr:
Outward_facing SLC15A4 monomer
Method: single particle / : Zhang SS, Chen XD, Xie M

PDB-8jzs:
Outward-facing SLC15A4 dimer
Method: single particle / : Zhang SS, Chen XD, Xie M

PDB-8jzu:
SLC15A4_TASL complex
Method: single particle / : Zhang SS, Chen XD, Xie M

EMDB-16758:
PHT1 in the outward facing conformation, bound to Sb27
Method: single particle / : Custodio T, Killer M, Loew C

PDB-8cni:
PHT1 in the outward facing conformation, bound to Sb27
Method: single particle / : Custodio T, Killer M, Loew C

EMDB-34522:
Cryo-EM Structure of SARS-CoV-2 BA.2 Spike protein in complex with BA7535
Method: single particle / : Liu Z, Yan A, Gao Y

EMDB-34526:
Cryo-EM structure of SARS-CoV-2 BA.2 RBD in complex with BA7535 fab (local refinement)
Method: single particle / : Liu Z, Yan A, Gao Y

PDB-8h7l:
Cryo-EM Structure of SARS-CoV-2 BA.2 Spike protein in complex with BA7535
Method: single particle / : Liu Z, Yan A, Gao Y

PDB-8h7z:
Cryo-EM structure of SARS-CoV-2 BA.2 RBD in complex with BA7535 fab (local refinement)
Method: single particle / : Liu Z, Yan A, Gao Y

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more