[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 63 items for (author: di & paolo & nc)

EMDB-18191:
X. laevis CMG dimer bound to dimeric DONSON - without ATPase
Method: single particle / : Cvetkovic MA, Costa A

EMDB-18192:
X. laevis CMG dimer bound to dimeric DONSON - MCM ATPase
Method: single particle / : Cvetkovic MA, Costa A

EMDB-18195:
Single CMG purified from replicating Xenopus egg extracts
Method: single particle / : Cvetkovic MA, Costa A

PDB-8q6o:
X. laevis CMG dimer bound to dimeric DONSON - without ATPase
Method: single particle / : Butryn A, Cvetkovic MA, Costa A

PDB-8q6p:
X. laevis CMG dimer bound to dimeric DONSON - MCM ATPase
Method: single particle / : Butryn A, Cvetkovic MA, Costa A

EMDB-29530:
SARS-CoV-2 XBB.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-29531:
SARS-CoV-2 BQ.1.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-40240:
SARS-CoV-2 BN.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8fxb:
SARS-CoV-2 XBB.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8fxc:
SARS-CoV-2 BQ.1.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

PDB-8s9g:
SARS-CoV-2 BN.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-14726:
Cryo-EM structure of ex vivo AA amyloid from renal tissue of a short hair cat deceased in a shelter
Method: helical / : Schulte T, Chaves-Sanjuan A, Ricagno S

PDB-7zh7:
Cryo-EM structure of ex vivo AA amyloid from renal tissue of a short hair cat deceased in a shelter
Method: helical / : Schulte T, Chaves-Sanjuan A, Ricagno S

EMDB-13824:
Single Particle Cryo-EM structure of photosynthetic A2B2 glyceraldehyde 3-phosphate dehydrogenase from Spinacia oleracia
Method: single particle / : Marotta R, Fermani S, Sparla F, Trost P, Del Giudice A

EMDB-13825:
Single Particle Cryo-EM structure of photosynthetic A4B4-glyceraldehyde 3-phosphate dehydrogenase from Spinacia oleracia.
Method: single particle / : Marotta R, Fermani S, Sparla F, Trost P, Del Giudice A

EMDB-13826:
Single Particle Cryo-EM structure of photosynthetic A8B8 glyceraldehyde-3-phosphate dehydrogenase hexadecamer (major conformer) from Spinacia oleracia.
Method: single particle / : Marotta R, Fermani S, Sparla F, Trost P, Del Giudice A

EMDB-13827:
Single Particle Cryo-EM structure of photosynthetic A8B8 glyceraldehyde-3-phosphate dehydrogenase (minor conformer) from Spinacia oleracea.
Method: single particle / : Marotta R, Fermani S, Sparla F, Trost P, Del Giudice A

EMDB-13828:
Single Particle Cryo-EM structure of photosynthetic A10B10 glyceraldehyde-3-phospahte dehydrogenase from Spinacia oleracea.
Method: single particle / : Marotta R, Fermani S, Sparla F, Trost P, Del Giudice A

PDB-7q53:
Single Particle Cryo-EM structure of photosynthetic A2B2 glyceraldehyde 3-phosphate dehydrogenase from Spinacia oleracia
Method: single particle / : Marotta R, Fermani S, Sparla F, Trost P, Del Giudice A

PDB-7q54:
Single Particle Cryo-EM structure of photosynthetic A4B4-glyceraldehyde 3-phosphate dehydrogenase from Spinacia oleracia.
Method: single particle / : Marotta R, Fermani S, Sparla F, Trost P, Del Giudice A

PDB-7q55:
Single Particle Cryo-EM structure of photosynthetic A8B8 glyceraldehyde-3-phosphate dehydrogenase hexadecamer (major conformer) from Spinacia oleracia.
Method: single particle / : Marotta R, Fermani S, Sparla F, Trost P, Del Giudice A

PDB-7q56:
Single Particle Cryo-EM structure of photosynthetic A8B8 glyceraldehyde-3-phosphate dehydrogenase (minor conformer) from Spinacia oleracea.
Method: single particle / : Marotta R, Fermani S, Sparla F, Trost P, Del Giudice A

PDB-7q57:
Single Particle Cryo-EM structure of photosynthetic A10B10 glyceraldehyde-3-phospahte dehydrogenase from Spinacia oleracea.
Method: single particle / : Marotta R, Fermani S, Sparla F, Trost P, Del Giudice A

EMDB-24533:
SARS-CoV-2 spike protein bound to the S2P6 and S2M11 Fab fragments
Method: single particle / : Sauer MM, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler D

EMDB-12512:
cAMP-free rabbit HCN4 stabilized in LMNG-CHS detergent mixture
Method: single particle / : Giese HM, Chaves-Sanjuan A, Saponaro A, Clarke O, Bolognesi M, Mancia F, Hendrickson WA, Thiel G, Santoro B, Moroni A

EMDB-12513:
cAMP-bound rabbit HCN4 stabilized in LMNG-CHS detergent mixture
Method: single particle / : Giese H, Chaves-Sanjuan A, Saponaro A, Clarke O, Bolognesi M, Mancia F, Hendrickson WA, Thiel G, Santoro B, Moroni A

PDB-7np3:
cAMP-free rabbit HCN4 stabilized in LMNG-CHS detergent mixture
Method: single particle / : Giese HM, Chaves-Sanjuan A, Saponaro A, Clarke O, Bolognesi M, Mancia F, Hendrickson WA, Thiel G, Santoro B, Moroni A

PDB-7np4:
cAMP-bound rabbit HCN4 stabilized in LMNG-CHS detergent mixture
Method: single particle / : Giese H, Chaves-Sanjuan A, Saponaro A, Clarke O, Bolognesi M, Mancia F, Hendrickson WA, Thiel G, Santoro B, Moroni A

EMDB-12466:
Rabbit HCN4 stabilised in amphipol A8-35
Method: single particle / : Swuec P

PDB-7nmn:
Rabbit HCN4 stabilised in amphipol A8-35
Method: single particle / : Chaves-Sanjuan A

EMDB-22925:
cryo-EM structure of SARS-CoV-2 spike in complex with Fab 15033-7, two RBDs bound
Method: single particle / : Li Z, Rini JM

EMDB-22926:
cryo-EM structure of SARS-CoV-2 spike in complex with Fab 15033-7, three RBDs bound
Method: single particle / : Li Z, Rini JM

PDB-7kmk:
cryo-EM structure of SARS-CoV-2 spike in complex with Fab 15033-7, two RBDs bound
Method: single particle / : Li Z, Rini JM

PDB-7kml:
cryo-EM structure of SARS-CoV-2 spike in complex with Fab 15033-7, three RBDs bound
Method: single particle / : Li Z, Rini JM

EMDB-23064:
SARS-CoV-2 spike protein in complex with Fab 15033-7, 3-"up", asymmetric
Method: single particle / : Li Z, Rini J

EMDB-23065:
SARS-CoV-2 spike protein in complex with Fab 15033-7, 2-"up"-1-"down" conformation
Method: single particle / : Li Z, Rini J

PDB-7kxj:
SARS-CoV-2 spike protein in complex with Fab 15033-7, 3-"up", asymmetric
Method: single particle / : Li Z, Rini J

PDB-7kxk:
SARS-CoV-2 spike protein in complex with Fab 15033-7, 2-"up"-1-"down" conformation
Method: single particle / : Li Z, Rini J

EMDB-22491:
SARS-CoV-2 spike in complex with the S2H13 neutralizing antibody Fab fragment (local refinement of the receptor-binding motif and Fab variable domains)
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

EMDB-22492:
SARS-CoV-2 spike in complex with the S2H13 neutralizing antibody (one RBD open)
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

EMDB-22494:
SARS-CoV-2 spike in complex with the S2H13 neutralizing antibody (closed conformation)
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

EMDB-22497:
SARS-CoV-2 spike in complex with the S2A4 neutralizing antibody Fab fragment (local refinement of the receptor-binding domain and Fab variable domains)
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

EMDB-22506:
SARS-CoV-2 spike in complex with the S2A4 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

EMDB-22507:
SARS-CoV-2 spike in complex with the S2H14 neutralizing antibody Fab fragment (two receptor-binding domains open)
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

EMDB-22508:
SARS-CoV-2 spike in complex with the S2H14 neutralizing antibody Fab fragment (three receptor-binding domains open)
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

EMDB-22512:
SARS-CoV-2 spike in complex with the S304 neutralizing antibody Fab fragment
Method: single particle / : Walls AC, Park YJ, Tortorici MA, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

EMDB-22516:
SARS-CoV-2 spike in complex with the S2X35 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

EMDB-22517:
SARS-CoV-2 spike in complex with the S2X35 neutralizing antibody Fab fragment (local refinement of the receptor-binding motif and Fab variable domains)
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

PDB-7jv2:
SARS-CoV-2 spike in complex with the S2H13 neutralizing antibody Fab fragment (local refinement of the receptor-binding motif and Fab variable domains)
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

PDB-7jv4:
SARS-CoV-2 spike in complex with the S2H13 neutralizing antibody (one RBD open)
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more