[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 55 items for (author: davis & jh)

EMDB-43285:
Human heavy-chain holoferritin refined in C1 from cryo-ET data filtered by tomoDRGN
Method: subtomogram averaging / : Powell BM, Davis JH

EMDB-43286:
Human heavy-chain apoferritin refined in C1 from cryo-ET data filtered by tomoDRGN
Method: subtomogram averaging / : Powell BM, Davis JH

EMDB-43287:
Membrane-associated 70S ribosome in complex with SecDF
Method: subtomogram averaging / : Powell BM, Davis JH

EMDB-27941:
Cryo-EM structure of substrate-free DNClpX.ClpP from singly capped particles
Method: single particle / : Ghanbarpour A, Cohen S, Davis JH, Sauer RT

EMDB-27946:
Cryo-EM structure of substrate-free DNClpX.ClpP
Method: single particle / : Ghanbarpour A, Cohen S, Davis JH, Sauer RT

EMDB-27952:
Cryo-EM structure of substrate-free ClpX.ClpP
Method: single particle / : Ghanbarpour A, Davis JH, Sauer RT

EMDB-28692:
30S_delta_ksgA_h44_inactive_conformation
Method: single particle / : Ortega J, Sun J

EMDB-28720:
30S_delta_ksgA+KsgA complex
Method: single particle / : Sun J, Kinman LF, Jahagirdar D, Ortega J, Davis JH

EMDB-28585:
Cryo-EM structure of a delivery complex containing the SspB adaptor, an ssrA-tagged substrate, and the AAA+ ClpXP protease
Method: single particle / : Ghanbarpour A, Fei X, Davis JH, Sauer RT

EMDB-26792:
Transcription co-activator SAGA
Method: single particle / : Vasyliuk D, Yip CK

EMDB-26803:
Cryo-EM structure of the SAGA Tra1 module
Method: single particle / : Vasyliuk D, Yip CK

EMDB-26804:
Cryo-EM structure of the SAGA core module
Method: single particle / : Vasyliuk D, Yip CK

EMDB-14153:
SARS-CoV-2 Spike, C3 symmetry
Method: single particle / : Naismith JH, Yang Y, Liu JW

EMDB-14152:
SARS-CoV-2 Spike with ethylbenzamide-tri-iodo Siallyllactose, C3 symmetry
Method: single particle / : Naismith JH, Yang Y, Liu JW

EMDB-14154:
SARS-CoV-2 Spike with ethylbenzamide-tri-iodo Siallyllactose, C1 symmetry
Method: single particle / : Naismith JH, Yang Y, Liu JW

EMDB-14155:
SARS-CoV-2 Spike, C1 symmetry
Method: single particle / : Naismith JH, Yang Y, Liu JW

EMDB-25471:
Structure of EBOV GP lacking the mucin-like domain with 1C11 scFv and 1C3 Fab bound
Method: single particle / : Milligan JC, Yu X, Saphire EO

EMDB-22475:
Composite cryo-EM density map of the radial spoke 1 isolated from Chlamydomonas reinhardtii
Method: single particle / : Gui M, Ma M, Sze-Tu E, Wang X, Koh F, Zhong E, Berger B, Davis J, Dutcher S, Zhang R, Brown A

EMDB-22480:
Cryo-EM density map of stalk of radial spoke 1 attached with doublet microtubule from Chlamydomonas reinhardtii
Method: single particle / : Gui M, Ma M, Sze-Tu E, Wang X, Koh F, Zhong E, Berger B, Davis J, Dutcher S, Zhang R, Brown A

EMDB-22481:
Composite cryo-EM density map of radial spoke 2 stalk, IDAc, and N-DRC attached with doublet microtubule
Method: single particle / : Gui M, Ma M, Sze-Tu E, Wang X, Koh F, Zhong E, Berger B, Davis J, Dutcher S, Zhang R, Brown A

EMDB-22482:
Cryo-EM density map of on-doublet radial spoke 1 head
Method: single particle / : Gui M, Ma M, Sze-Tu E, Wang X, Koh F, Zhong E, Berger B, Davis J, Dutcher S, Zhang R, Brown A

EMDB-22483:
Cryo-EM density map of on-doublet radial spoke 2 head
Method: single particle / : Gui M, Ma M, Sze-Tu E, Wang X, Koh F, Zhong E, Berger B, Davis J, Dutcher S, Zhang R, Brown A

EMDB-22486:
Cryo-EM density map of RSP1 dimer from two radial spokes
Method: single particle / : Gui M, Ma M, Sze-Tu E, Wang X, Koh F, Zhong E, Berger B, Davis J, Dutcher S, Zhang R, Brown A

EMDB-0481:
Role of Era in Assembly and Homeostasis of the Ribosomal Small Subunit
Method: single particle / : Razi A, Davis JH, Hao Y, Jahagirdar D, Thurlow B, Basu K, Jain N, Gomez-Blanco J, Britton RA, Vargas J, Guarne A, Woodson SA, Williamson JR, Ortega J

EMDB-0482:
Role of Era in Assembly and Homeostasis of the Ribosomal Small Subunit
Method: single particle / : Ortega J, Davis JH, Hao Y, Jahagirdar D, Thurlow B, Basu K, Jain N, Gomez-Blanco J, Britton RA, Vargas J, Guarne A, Woodson SA, Williamson JR

EMDB-0483:
Role of Era in Assembly and Homeostasis of the Ribosomal Small Subunit
Method: single particle / : Ortega J, Davis JH, Hao Y, Jahagirdar D, Thurlow B, Basu K, Jain N, Gomez-Blanco J, Britton RA, Vargas J, Guarne A, Woodson SA, Williamson JR

EMDB-0484:
Role of Era in Assembly and Homeostasis of the Ribosomal Small Subunit
Method: single particle / : Ortega J, Davis JH, Hao Y, Jahagirdar D, Thurlow B, Basu K, Jain N, Gomez-Blanco J, Britton RA, Vargas J, Guarne A, Woodson SA, Williamson JR

EMDB-8731:
Influenza hemagglutinin (HA) trimer reconstruction at 4.2 Angstrom resolution using particles from micrographs tilted at 40 degrees
Method: single particle / : Tan Y, Baldwin PR, Potter CS, Carragher B, Lyumkis D

EMDB-8434:
Structure of bL17-depleted large ribosomal subunit assembly intermediate - Class A
Method: single particle / : Tan Y, Davis JH, Lyumkis D

EMDB-8440:
Structure of bL17-depleted large ribosomal subunit assembly intermediate - Class B
Method: single particle / : Tan Y, Davis JH, Lyumkis D

EMDB-8441:
Structure of bL17-depleted large ribosomal subunit assembly intermediate - Class C
Method: single particle / : Tan Y, Davis JH, Lyumkis D

EMDB-8442:
Structure of bL17-depleted large ribosomal subunit assembly intermediate - Class C1
Method: single particle / : Tan Y, Davis JH, Lyumkis D

EMDB-8443:
Structure of bL17-depleted large ribosomal subunit assembly intermediate - Class C2
Method: single particle / : Tan Y, Davis JH, Lyumkis D

EMDB-8444:
Structure of bL17-depleted large ribosomal subunit assembly intermediate - Class C3
Method: single particle / : Tan Y, Davis JH, Lyumkis D

EMDB-8445:
Structure of bL17-depleted large ribosomal subunit assembly intermediate - Class D
Method: single particle / : Tan Y, Davis JH, Lyumkis D

EMDB-8446:
Structure of bL17-depleted large ribosomal subunit assembly intermediate - Class D1
Method: single particle / : Tan Y, Davis JH, Lyumkis D

EMDB-8447:
Structure of bL17-depleted large ribosomal subunit assembly intermediate - Class D2
Method: single particle / : Tan Y, Davis JH, Lyumkis D

EMDB-8448:
Structure of bL17-depleted large ribosomal subunit assembly intermediate - Class D3
Method: single particle / : Tan Y, Davis JH, Lyumkis D

EMDB-8449:
Structure of bL17-depleted large ribosomal subunit assembly intermediate - Class D4
Method: single particle / : Tan Y, Davis JH, Lyumkis D

EMDB-8450:
Structure of bL17-depleted large ribosomal subunit assembly intermediate - Class E
Method: single particle / : Tan Y, Davis JH, Lyumkis D

EMDB-8451:
Structure of bL17-depleted large ribosomal subunit assembly intermediate - Class E1
Method: single particle / : Tan Y, Davis JH, Lyumkis D

EMDB-8452:
Structure of bL17-depleted large ribosomal subunit assembly intermediate - Class E2
Method: single particle / : Tan Y, Davis JH, Lyumkis D

EMDB-8453:
Structure of bL17-depleted large ribosomal subunit assembly intermediate - Class E3
Method: single particle / : Tan Y, Davis JH, Lyumkis D

EMDB-8455:
Structure of bL17-depleted large ribosomal subunit assembly intermediate - Class E4
Method: single particle / : Tan Y, Davis JH, Lyumkis D

EMDB-8456:
Structure of bL17-depleted large ribosomal subunit assembly intermediate - Class E5
Method: single particle / : Tan Y, Davis JH, Lyumkis D

EMDB-8457:
Structure of 30S Ribosome - Class F
Method: single particle / : Tan Y, Davis JH, Lyumkis D

EMDB-8274:
YphC and YsxC GTPases assist the maturation of the central protuberance, GTPase-associated region, and functional core of the 50S ribosomal subunit
Method: single particle / : Ni X, Davis JH, Jain N, Razi A, Benlekbir S, McArthur AG, Rubinstein JR, Britton RA, Williamson JR, Ortega J

EMDB-8275:
YphC and YsxC GTPases assist the maturation of the central protuberance, GTPase-associated region, and functional core of the 50S ribosomal subunit
Method: single particle / : Ni X, Davis JH, Jain N, Razi A, Benlekbir S, McArthur AG, Rubinstein JR, Britton RA, Williamson JR, Ortega J

EMDB-8276:
YphC and YsxC GTPases assist the maturation of the central protuberance, GTPase-associated region, and functional core of the 50S ribosomal subunit
Method: single particle / : Ni X, Davis JH, Jain N, Razi A, Benlekbir S, McArthur AG, Rubinstein JR, Britton RA, Williamson JR, Ortega J

EMDB-5787:
Cryo-electron microscopy of the 50S ribosomal subunit from Bacillus subtilis
Method: single particle / : Jomaa A, Jain N, Davis JH, Williamson JR, Britton RA, Ortega J

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more