[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 626 items for (author: chen, & j.)

PDB-8y6v:
Near-atomic structure of icosahedrally averaged jumbo bacteriophage PhiKZ capsid
Method: single particle / : Yang Y, Shao Q, Guo M, Han L, Zhao X, Wang A, Li X, Wang B, Pan J, Chen Z, Fokine A, Sun L, Fang Q

PDB-8u39:
Structure of Human Mitochondrial Chaperonin V72I mutant
Method: single particle / : Chen L, Wang J

PDB-8xvg:
Structure of human NuA4/TIP60 complex
Method: single particle / : Chen K, Wang L, Yu Z, Yu J, Ren Y, Wang Q, Xu Y

PDB-8xvt:
The core subcomplex of human NuA4/TIP60 complex
Method: single particle / : Chen K, Wang L, Yu Z, Yu J, Ren Y, Wang Q, Xu Y

PDB-8xvv:
The TRRAP module of human NuA4/TIP60 complex
Method: single particle / : Chen K, Wang L, Yu Z, Yu J, Ren Y, Wang Q, Xu Y

PDB-8xrp:
The Cryo-EM structure of IL-12, receptor subunit beta-1 and receptor subunit beta-2 complex
Method: single particle / : Chen HQ, Wang XQ, Ge XF, Zeng JW, Wang JW

PDB-8v3q:
Structure of CCP5 class1
Method: single particle / : Chen J, Zehr EA, Gruschus JM, Szyk A, Liu Y, Tanner ME, Tjandra N, Roll-Mecak A

PDB-8v3r:
Structure of CCP5 class2
Method: single particle / : Chen J, Zehr EA, Gruschus JM, Szyk A, Liu Y, Tanner ME, Tjandra N, Roll-Mecak A

PDB-8v3s:
Structure of CCP5 class3
Method: single particle / : Chen J, Zehr EA, Gruschus JM, Szyk A, Liu Y, Tanner ME, Tjandra N, Roll-Mecak A

PDB-8v4k:
CCP5 in complex with microtubules class1
Method: single particle / : Chen J, Zehr EA, Gruschus JM, Szyk A, Liu Y, Tanner ME, Tjandra N, Roll-Mecak A

PDB-8v4l:
CCP5 in complex with microtubules class2
Method: single particle / : Chen J, Zehr EA, Gruschus JM, Szyk A, Liu Y, Tanner ME, Tjandra N, Roll-Mecak A

PDB-8v4m:
CCP5 in complex with microtubules class3
Method: single particle / : Chen J, Zehr EA, Gruschus JM, Szyk A, Liu Y, Tanner ME, Tjandra N, Roll-Mecak A

PDB-9c82:
Structure of human ULK1C:PI3KC3-C1 supercomplex
Method: single particle / : Chen M, Hurley JH

PDB-8wjl:
Cryo-EM structure of 6-subunit Smc5/6 hinge region
Method: single particle / : Li Q, Zhang J, Zhang X, Cheng T, Wang Z, Jin D, Chen Z, Wang L

PDB-8wjn:
Cryo-EM structure of 6-subunit Smc5/6 head region
Method: single particle / : Li Q, Zhang J, Zhang X, Cheng T, Wang Z, Jin D, Chen Z, Wang L

PDB-8wjo:
Cryo-EM structure of 8-subunit Smc5/6 arm region
Method: single particle / : Li Q, Zhang J, Zhang X, Cheng T, Wang Z, Jin D, Chen Z, Wang L

PDB-8gls:
Complex of human cystic fibrosis transmembrane conductance regulator (CFTR) and Z1834339853
Method: single particle / : Liu F, Chen J

PDB-8rnu:
CryoEM structure of recombinant human Bri2 BRICHOS oligomers
Method: single particle / : Chen G, Johansson J, Hebert H

PDB-8t4f:
Transporter associated with antigen processing (TAP) bound to the 9-mer peptide RRYQKSTEL
Method: single particle / : Lee J, Oldham ML, Chen J

PDB-8t4e:
Transporter associated with antigen processing (TAP) bound to the 9-mer peptide ILKEPVHGV
Method: single particle / : Lee J, Oldham ML, Chen J

PDB-8t4h:
Transporter associated with antigen processing (TAP) bound to the 8-mer peptide RRYQSTEL
Method: single particle / : Lee J, Chen J

PDB-8t4g:
Transporter associated with antigen processing (TAP) bound to the 9-mer peptide QYDDAVYKL
Method: single particle / : Lee J, Oldham ML, Chen J

PDB-8t4i:
Transporter associated with antigen processing (TAP) bound to the 7-mer peptide RRYSTEL
Method: single particle / : Lee J, Oldham ML, Chen J

PDB-8t4j:
Transporter associated with antigen processing (TAP) bound to the 14-mer peptide LPAVVGLSPGEQEY
Method: single particle / : Lee J, Oldham ML, Chen J

PDB-8t46:
Transporter associated with antigen processing (TAP) in the apo state
Method: single particle / : Lee J, Oldham ML, Chen J

PDB-8jmm:
Structure of XBB spike protein (S) dimer-trimer in complex with bispecific antibody G7-Fc at 3.75 Angstroms resolution.
Method: single particle / : Hao A, Mao Q, Chen Z, Huang J, Sun L

PDB-8u5h:
Cryo-EM structure of human DNMT3A UDR bound to H2AK119ub1-modified nucleosome
Method: single particle / : Chen X, Song J

PDB-8yut:
Cryo-EM structure of the amthamine-bound H2R-Gs complex
Method: single particle / : Shen Q, Tang X, Wen X, Cheng S, Xiao P, Zang S, Shen D, Jiang L, Zheng Y, Zhang H, Xu H, Mao C, Zhang M, Hu W, Sun J, Chen Z, Zhang Y

PDB-8yuu:
Cryo-EM structure of the histamine-bound H3R-Gi complex
Method: single particle / : Shen Q, Tang X, Wen X, Cheng S, Xiao P, Zang S, Shen D, Jiang L, Zheng Y, Zhang H, Xu H, Mao C, Zhang M, Hu W, Sun J, Chen Z, Zhang Y

PDB-8yuv:
Cryo-EM structure of the immepip-bound H3R-Gi complex
Method: single particle / : Shen Q, Tang X, Wen X, Cheng S, Xiao P, Zang S, Shen D, Jiang L, Zheng Y, Zhang H, Xu H, Mao C, Zhang M, Hu W, Sun J, Chen Z, Zhang Y

PDB-8z85:
Cryo-EM structure of Thogoto virus polymerase in transcription pre-initiation conformation 1
Method: single particle / : Xue L, Chang T, Li Z, Zhao H, Li M, He J, Chen X, Xiong X

PDB-8z8j:
Cryo-EM structure of Thogoto virus polymerase in transcription pre-initiation conformation 2
Method: single particle / : Xue L, Chang T, Li Z, Zhao H, Li M, He J, Chen X, Xiong X

PDB-8z8n:
Cryo-EM structure of Thogoto virus polymerase in transcription pre-initiation conformation 3
Method: single particle / : Xue L, Chang T, Li Z, Zhao H, Li M, He J, Chen X, Xiong X

PDB-8z8x:
Cryo-EM structure of Thogoto virus polymerase in a transcription initiation conformation
Method: single particle / : Xue L, Chang T, Li Z, Zhao H, Li M, He J, Chen X, Xiong X

PDB-8z90:
Cryo-EM structure of Thogoto virus polymerase in transcription initiation conformation 2
Method: single particle / : Xue L, Chang T, Li Z, Zhao H, Li M, He J, Chen X, Xiong X

PDB-8z97:
Cryo-EM structure of Thogoto virus polymerase in a transcription elongation conformation
Method: single particle / : Xue L, Chang T, Li Z, Zhao H, Li M, He J, Chen X, Xiong X

PDB-8z98:
Cryo-EM structure of Thogoto virus polymerase in a transcription reception conformation
Method: single particle / : Xue L, Chang T, Li Z, Zhao H, Li M, He J, Chen X, Xiong X

PDB-8z9h:
Cryo-EM structure of Thogoto virus polymerase in a transcription elongation-reception conformation
Method: single particle / : Xue L, Chang T, Li Z, Zhao H, Li M, He J, Chen X, Xiong X

PDB-8z9q:
Cryo-EM structure of Thogoto virus polymerase in a replication reception conformation
Method: single particle / : Xue L, Chang T, Li Z, Zhao H, Li M, He J, Chen X, Xiong X

PDB-8z9r:
Cryo-EM structure of Thogoto virus polymerase in a replication elongation-reception conformation
Method: single particle / : Xue L, Chang T, Li Z, Zhao H, Li M, He J, Chen X, Xiong X

PDB-8zc2:
SARS-CoV-2 Omicron BA.2 spike trimer (6P) in complex with D1F6 Fab, head-to-head aggregate
Method: single particle / : Liu B, Gao X, Li Z, Chen Q, He J, Xiong X

PDB-8zc6:
SARS-CoV-2 Omicron BA.4 spike trimer (6P) in complex with D1F6 Fab, head-to-head aggregate
Method: single particle / : Liu B, Gao X, Li Z, Chen Q, He J, Xiong X

PDB-8zby:
SARS-CoV-2 Omicron BA.1 spike trimer (x2-4P) in complex with 3 D1F6 Fabs (0 RBD up)
Method: single particle / : Liu B, Gao X, Li Z, Chen Q, He J, Xiong X

PDB-8zbz:
SARS-CoV-2 Omicron BA.2 spike trimer (6P) in complex with 3 D1F6 Fabs (1 RBD up)
Method: single particle / : Liu B, Gao X, Li Z, Chen Q, He J, Xiong X

PDB-8zc0:
SARS-CoV-2 Omicron BA.2 spike trimer (6P) in complex with 3 D1F6 Fabs (2 RBD up)
Method: single particle / : Liu B, Gao X, Li Z, Chen Q, He J, Xiong X

PDB-8zc1:
SARS-CoV-2 Omicron BA.2 spike trimer (6P) in complex with D1F6 Fab, focused refinement of RBD region
Method: single particle / : Liu B, Gao X, Li Z, Chen Q, He J, Xiong X

PDB-8zc3:
SARS-CoV-2 Omicron BA.4 spike trimer (6P) in complex with 3 D1F6 Fabs (1 RBD up)
Method: single particle / : Liu B, Gao X, Li Z, Chen Q, He J, Xiong X

PDB-8zc4:
SARS-CoV-2 Omicron BA.4 spike trimer (6P) in complex with 3 D1F6 Fabs (2 RBD up)
Method: single particle / : Liu B, Gao X, Li Z, Chen Q, He J, Xiong X

PDB-8zc5:
SARS-CoV-2 Omicron BA.4 spike trimer (6P) in complex with D1F6 Fab, focused refinement of RBD region
Method: single particle / : Liu B, Gao X, Li Z, Chen Q, He J, Xiong X

PDB-8z1e:
A homotrimeric GPCR architecture of the human cytomegalovirus (UL78) revealed by cryo-EM
Method: single particle / : Chen Y, Li Y, Zhou Q, Cong Z, Lin S, Yan J, Chen X, Yang D, Ying T, Wang MW

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more