[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 63 items for (author: c. & j. & stefan)

PDB-8c80:
Cryo-EM structure of the yeast SPT-Orm1-Monomer complex
Method: single particle / : Schaefer J, Koerner C, Parey K, Januliene D, Moeller A, Froehlich F

PDB-8c81:
Cryo-EM structure of the yeast SPT-Orm1-Sac1 complex
Method: single particle / : Schaefer J, Koerner C, Parey K, Januliene D, Moeller A, Froehlich F

PDB-8c82:
Cryo-EM structure of the yeast SPT-Orm1-Dimer complex
Method: single particle / : Schaefer J, Koerner C, Parey K, Januliene D, Moeller A, Froehlich F

PDB-8afz:
Architecture of the ESCPE-1 membrane coat
Method: subtomogram averaging / : Lopez-Robles C, Scaramuzza S, Astorga-Simon E, Ishida M, Williamsom CD, Banos-Mateos S, Gil-Carton D, Romero M, Vidaurrazaga A, Fernandez-Recio J, Rojas AL, Bonifacino JS, Castano-Diez D, Hierro A

PDB-8g8w:
Molecular mechanism of nucleotide inhibition of human uncoupling protein 1
Method: single particle / : Gogoi P, Jones SA, Ruprecht JJ, King MS, Lee Y, Zogg T, Pardon E, Chand D, Steimle S, Copeman D, Cotrim CA, Steyaert J, Crichton PG, Moiseenkova-Bell V, Kunji ERS

PDB-8atd:
Wild type hexamer oxalyl-CoA synthetase (OCS)
Method: single particle / : Lill P, Burgi J, Raunser S, Wilmanns M, Gatsogiannis C

PDB-7zir:
Cryo-EM structure of hnRNPDL amyloid fibrils
Method: helical / : Garcia-Pardo J, Chaves-Sanjuan A, Bartolome-Nafria A, Gil-Garcia M, Visentin C, Bolognesi M, Ricagno S, Ventura S

PDB-8aag:
H1-bound palindromic nucleosome, state 1
Method: single particle / : Alegrio Louro J, Beinsteiner B, Cheng TC, Patel AKM, Boopathi R, Angelov D, Hamiche A, Bednar J, Kale S, Dimitrov S, Klaholz B

PDB-8ads:
Lipidic alpha-synuclein fibril - polymorph L2B
Method: helical / : Frieg B, Antonschmidt L, Dienemann C, Geraets JA, Najbauer EE, Matthes D, de Groot BL, Andreas LB, Becker S, Griesinger C, Schroeder GF

PDB-8adu:
Lipidic alpha-synuclein fibril - polymorph L1A
Method: helical / : Frieg B, Antonschmidt L, Dienemann C, Geraets JA, Najbauer EE, Matthes D, de Groot BL, Andreas LB, Becker S, Griesinger C, Schroeder GF

PDB-8adv:
Lipidic alpha-synuclein fibril - polymorph L1B
Method: helical / : Frieg B, Antonschmidt L, Dienemann C, Geraets JA, Najbauer EE, Matthes D, de Groot BL, Andreas LB, Becker S, Griesinger C, Schroeder GF

PDB-8adw:
Lipidic alpha-synuclein fibril - polymorph L1C
Method: helical / : Frieg B, Antonschmidt L, Dienemann C, Geraets JA, Najbauer EE, Matthes D, de Groot BL, Andreas LB, Becker S, Griesinger C, Schroeder GF

PDB-8aex:
Lipidic alpha-synuclein fibril - polymorph L3A
Method: helical / : Frieg B, Antonschmidt L, Dienemann C, Geraets JA, Najbauer EE, Matthes D, de Groot BL, Andreas LB, Becker S, Griesinger C, Schroeder GF

PDB-8a4l:
Lipidic alpha-synuclein fibril - polymorph L2A
Method: helical / : Frieg B, Antonschmidt L, Dienemann C, Geraets JA, Najbauer EE, Matthes D, de Groot BL, Andreas LB, Becker S, Griesinger C, Schroeder GF

PDB-7sk3:
Cryo-EM structure of ACKR3 in complex with CXCL12, an intracellular Fab, and an extracellular Fab
Method: single particle / : Yen YC, Schafer CT, Gustavsson M, Handel TM, Tesmer JJG

PDB-7sk4:
Cryo-EM structure of ACKR3 in complex with chemokine N-terminal mutant CXCL12_LRHQ, an intracellular Fab, and an extracellular Fab
Method: single particle / : Yen YC, Schafer CT, Gustavsson M, Handel TM, Tesmer JJG

PDB-7sk5:
Cryo-EM structure of ACKR3 in complex with CXCL12 and an intracellular Fab
Method: single particle / : Yen YC, Schafer CT, Gustavsson M, Handel TM, Tesmer JJG

PDB-7sk6:
Cryo-EM structure of human ACKR3 in complex with chemokine N-terminal mutant CXCL12_LRHQ and an intracellular Fab
Method: single particle / : Yen YC, Schafer CT, Gustavsson M, Handel TM, Tesmer JJG

PDB-7sk7:
Cryo-EM structure of human ACKR3 in complex with CXCL12, a small molecule partial agonist CCX662, and an extracellular Fab
Method: single particle / : Yen YC, Schafer CT, Gustavsson M, Handel TM, Tesmer JJG

PDB-7sk8:
Cryo-EM structure of human ACKR3 in complex with CXCL12, a small molecule partial agonist CCX662, an extracellular Fab, and an intracellular Fab
Method: single particle / : Yen YC, Schafer CT, Gustavsson M, Handel TM, Tesmer JJG

PDB-7sk9:
Cryo-EM structure of human ACKR3 in complex with a small molecule partial agonist CCX662, and an intracellular Fab
Method: single particle / : Yen YC, Schafer CT, Gustavsson M, Handel TM, Tesmer JJG

PDB-7tbj:
Composite structure of the human nuclear pore complex (NPC) symmetric core generated with a 12A cryo-ET map of the purified HeLa cell NPC
Method: subtomogram averaging / : Petrovic S, Samanta D, Perriches T, Bley CJ, Thierbach K, Brown B, Nie S, Mobbs GW, Stevens TA, Liu X, Tomaleri GP, Schaus L, Hoelz A

PDB-7tbl:
Composite structure of the human nuclear pore complex (NPC) cytoplasmic face generated with a 12A cryo-ET map of the purified HeLa cell NPC
Method: subtomogram averaging / : Bley CJ, Nie S, Mobbs GW, Petrovic S, Gres AT, Liu X, Mukherjee S, Harvey S, Huber FM, Lin DH, Brown B, Tang AW, Rundlet EJ, Correia AR, Chen S, Regmi SG, Stevens TA, Jette CA, Dasso M, Patke A, Palazzo AF, Kossiakoff AA, Hoelz A

PDB-7mvu:
Single particle cryo-EM structure of the Chaetomium thermophilum Nup192-Nic96 complex (Nup192 residues 1-1756; Nic96 residues 240-301)
Method: single particle / : Petrovic S, Samanta D, Perriches T, Bley CJ, Thierbach K, Brown B, Nie S, Mobbs GW, Stevens TA, Liu X, Tomaleri GP, Schaus L, Hoelz A

PDB-7mvv:
Single particle cryo-EM structure of the Chaetomium thermophilum Nup192-Nic96-Nup53-Nup145N complex (Nup192 residues 1-1756; Nic96 residues 240-301; Nup53 31-67; Nup145N 616-683)
Method: single particle / : Petrovic S, Samanta D, Perriches T, Bley CJ, Thierbach K, Brown B, Nie S, Mobbs GW, Stevens TA, Liu X, Tomaleri GP, Schaus L, Hoelz A

PDB-7mvy:
Single particle cryo-EM structure of the Chaetomium thermophilum Nup188-Nic96 complex (Nup188 residues 1-1858; Nic96 residues 240-301)
Method: single particle / : Petrovic S, Samanta D, Perriches T, Bley CJ, Thierbach K, Brown B, Nie S, Mobbs GW, Stevens TA, Liu X, Tomaleri GP, Schaus L, Hoelz A

PDB-7mvz:
Single particle cryo-EM structure of the Chaetomium thermophilum Nup188-Nic96-Nup145N complex (Nup188 residues 1-1858; Nic96 residues 240-301; Nup145N residues 640-732)
Method: single particle / : Petrovic S, Samanta D, Perriches T, Bley CJ, Thierbach K, Brown B, Nie S, Mobbs GW, Stevens TA, Liu X, Tomaleri GP, Schaus L, Hoelz A

PDB-7tbi:
Composite structure of the S. cerevisiae nuclear pore complex (NPC)
Method: subtomogram averaging / : Petrovic S, Samanta D, Perriches T, Bley CJ, Thierbach K, Brown B, Nie S, Mobbs GW, Stevens TA, Liu X, Tomaleri GP, Schaus L, Hoelz A

PDB-7tbk:
Composite structure of the dilated human nuclear pore complex (NPC) symmetric core generated with a 37A in situ cryo-ET map of CD4+ T cell NPC
Method: subtomogram averaging / : Petrovic S, Samanta D, Perriches T, Bley CJ, Thierbach K, Brown B, Nie S, Mobbs GW, Stevens TA, Liu X, Tomaleri GP, Schaus L, Hoelz A

PDB-7tbm:
Composite structure of the dilated human nuclear pore complex (NPC) generated with a 37A in situ cryo-ET map of CD4+ T cell NPC
Method: subtomogram averaging / : Bley CJ, Nie S, Mobbs GW, Petrovic S, Gres AT, Liu X, Mukherjee S, Harvey S, Huber FM, Lin DH, Brown B, Tang AW, Rundlet EJ, Correia AR, Chen S, Regmi SG, Stevens TA, Jette CA, Dasso M, Patke A, Palazzo AF, Kossiakoff AA, Hoelz A

PDB-7ml0:
RNA polymerase II pre-initiation complex (PIC1)
Method: single particle / : Yang C, Fujiwara R, Kim HJ, Gorbea Colon JJ, Steimle S, Garcia BA, Murakami K

PDB-7ml1:
RNA polymerase II pre-initiation complex (PIC2)
Method: single particle / : Yang C, Fujiwara R, Kim HJ, Gorbea Colon JJ, Steimle S, Garcia BA, Murakami K

PDB-7ml2:
RNA polymerase II pre-initiation complex (PIC3)
Method: single particle / : Yang C, Fujiwara R, Kim HJ, Gorbea Colon JJ, Steimle S, Garcia BA, Murakami K

PDB-7ml3:
General transcription factor TFIIH (weak binding)
Method: single particle / : Yang C, Fujiwara R, Kim HJ, Gorbea Colon JJ, Steimle S, Garcia BA, Murakami K

PDB-7ml4:
RNA polymerase II initially transcribing complex (ITC)
Method: single particle / : Yang C, Fujiwara R, Kim HJ, Gorbea Colon JJ, Steimle S, Garcia BA, Murakami K

PDB-7q97:
Structure of the bacterial type VI secretion system effector RhsA.
Method: single particle / : Guenther P, Quentin D, Ahmad S, Sachar K, Gatsogiannis C, Whitney JC, Raunser S

PDB-7q5p:
Structure of VgrG1 from Pseudomonas protegens.
Method: single particle / : Guenther P, Quentin D, Ahmad S, Sachar K, Gatsogiannis C, Whitney JC, Raunser S

PDB-7nj0:
CryoEM structure of the human Separase-Cdk1-cyclin B1-Cks1 complex
Method: single particle / : Yu J, Raia P, Ghent CM, Raisch T, Sadian Y, Barford D, Raunser S, Morgan DO, Boland A

PDB-7nj1:
CryoEM structure of the human Separase-Securin complex
Method: single particle / : Yu J, Raia P, Ghent CM, Raisch T, Sadian Y, Barford D, Raunser S, Morgan DO, Boland A

PDB-7bb6:
AVP-V2R-Galphas-beta1-gamma2-Nb35 (L state)
Method: single particle / : Bous J, Mouillac B, Bron P, Granier S, Floquet N, Leyrat C

PDB-7bb7:
AVP-V2R-Galphas-beta1-gamma2-Nb35(T state)
Method: single particle / : Bous J, Mouillac B, Bron P, Granier S, Floquet N, Leyrat C

PDB-7jv2:
SARS-CoV-2 spike in complex with the S2H13 neutralizing antibody Fab fragment (local refinement of the receptor-binding motif and Fab variable domains)
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

PDB-7jv4:
SARS-CoV-2 spike in complex with the S2H13 neutralizing antibody (one RBD open)
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

PDB-7jv6:
SARS-CoV-2 spike in complex with the S2H13 neutralizing antibody (closed conformation)
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

PDB-7jva:
SARS-CoV-2 spike in complex with the S2A4 neutralizing antibody Fab fragment (local refinement of the receptor-binding domain and Fab variable domains)
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

PDB-7jvc:
SARS-CoV-2 spike in complex with the S2A4 neutralizing antibody Fab fragment
Method: single particle / : Park YJ, Tortorici MA, Walls AC, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

PDB-7jw0:
SARS-CoV-2 spike in complex with the S304 neutralizing antibody Fab fragment
Method: single particle / : Walls AC, Park YJ, Tortorici MA, Czudnochowski N, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Snell G, Veesler D

PDB-6oig:
Subunit joining exposes nascent pre-40S rRNA for processing and quality control
Method: single particle / : Rai J, Parker MD, Ghalei H, Johnson MC, Karbstein K, Stroupe ME

PDB-6wdr:
Subunit joining exposes nascent pre-40S rRNA for processing and quality control
Method: single particle / : Rai J, Parker MD, Huang H, Choy S, Ghalei H, Johnson MC, Karbstein K, Stroupe ME

PDB-6wps:
Structure of the SARS-CoV-2 spike glycoprotein in complex with the S309 neutralizing antibody Fab fragment
Method: single particle / : Pinto D, Park YJ, Beltramello M, Walls AC, Tortorici MA, Bianchi S, Jaconi S, Culap K, Zatta F, De Marco A, Peter A, Guarino B, Spreafico R, Cameroni E, Case JB, Chen RE, Havenar-Daughton C, Snell G, Virgin HW, Lanzavecchia A, Diamond MS, Fink K, Veesler D, Corti D, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more