[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 3,960 items for (author: bu & w)

EMDB-45185:
Cutibacterium acnes 50S ribosomal subunit with Clindamycin bound
Method: single particle / : Lomakin IB, Devarkar SC, Bunick CG

EMDB-42456:
Omicron-S-MERS-RBD
Method: single particle / : Bu F, Li F, Liu B

EMDB-19822:
Helical reconstruction of yeast eisosome protein Pil1 bound to membrane composed of lipid mixture +PIP2/+bromosterol (DOPC, DOPE, DOPS, bromo-ergosterol, PI(4,5)P2 35:20:20:15:10)
Method: helical / : Kefauver JM, Zou L, Desfosses A, Loewith RJ

EMDB-43139:
SARS-CoV-2 Spike S2 bound to Fab 54043-5
Method: single particle / : Johnson NV, McLellan JS

EMDB-16825:
Structure of human terminal uridylyltransferase 7 (hTUT7/ZCCHC6)
Method: single particle / : Yi G, Ye M, Gilbert RJ

EMDB-17084:
Structure of human terminal uridylyltransferase 7 (hTUT7/ZCCHC6) bound with pre-let7g miRNA and UTPalphaS
Method: single particle / : Yi G, Ye M, Gilbert RJ

EMDB-17086:
Human terminal uridylyltransferase 7 (TUT7/ZCCHC6) bound with pre-let7g miRNA and Lin28A - complex 1
Method: single particle / : Yi G, Ye M, Gilbert RJ

EMDB-17087:
Human terminal uridylyltransferase 7 (TUT7/ZCCHC6) bound with pre-let7g miRNA and Lin28A - complex 2
Method: single particle / : Yi G, Ye M, Gilbert RJ

PDB-8oef:
Structure of human terminal uridylyltransferase 7 (hTUT7/ZCCHC6)
Method: single particle / : Yi G, Ye M, Gilbert RJ

PDB-8opp:
Structure of human terminal uridylyltransferase 7 (hTUT7/ZCCHC6) bound with pre-let7g miRNA and UTPalphaS
Method: single particle / : Yi G, Ye M, Gilbert RJ

PDB-8ops:
Human terminal uridylyltransferase 7 (TUT7/ZCCHC6) bound with pre-let7g miRNA and Lin28A - complex 1
Method: single particle / : Yi G, Ye M, Gilbert RJ

PDB-8opt:
Human terminal uridylyltransferase 7 (TUT7/ZCCHC6) bound with pre-let7g miRNA and Lin28A - complex 2
Method: single particle / : Yi G, Ye M, Gilbert RJ

EMDB-18307:
Native eisosome lattice bound to plasma membrane microdomain
Method: single particle / : Kefauver JM, Zou L, Loewith RJ, Defosses A

EMDB-18308:
Helical reconstruction of yeast eisosome protein Pil1 bound to membrane composed of lipid mixture -PIP2/+sterol (DOPC, DOPE, DOPS, cholesterol 30:20:20:30)
Method: helical / : Kefauver JM, Zou L, Desfosses A, Loewith RJ

EMDB-18309:
Helical reconstruction of yeast eisosome protein Pil1 bound to membrane composed of lipid mixture +PIP2/-sterol (DOPC, DOPE, DOPS, PI(4,5)P2 50:20:20:10)
Method: helical / : Kefauver JM, Zou L, Desfosses A, Loewith RJ

EMDB-18310:
Helical reconstruction of yeast eisosome protein Pil1 bound to membrane composed of lipid mixture +PIP2/+sterol (DOPC, DOPE, DOPS, cholesterol, PI(4,5)P2 35:20:20:15:10)
Method: helical / : Kefauver JM, Zou L, Desfosses A, Loewith RJ

EMDB-18311:
Compact state - Native eisosome lattice bound to plasma membrane microdomain
Method: single particle / : Kefauver JM, Zou L, Desfosses A, Loewith RJ

EMDB-18312:
Stretched state - Native eisosome lattice bound to plasma membrane microdomain
Method: single particle / : Kefauver JM, Zou L, Desfosses A, Loewith RJ

PDB-8qb7:
Pil1 in native eisosome lattice bound to plasma membrane microdomain
Method: single particle / : Kefauver JM, Zou L, Loewith RJ, Defosses A

PDB-8qb8:
Lsp1 in native eisosome lattice bound to plasma membrane microdomain
Method: single particle / : Kefauver JM, Zou L, Loewith RJ, Defosses A

PDB-8qb9:
Helical reconstruction of yeast eisosome protein Pil1 bound to membrane composed of lipid mixture -PIP2/+sterol (DOPC, DOPE, DOPS, cholesterol 30:20:20:30)
Method: helical / : Kefauver JM, Zou L, Desfosses A, Loewith RJ

PDB-8qbb:
Helical reconstruction of yeast eisosome protein Pil1 bound to membrane composed of lipid mixture +PIP2/-sterol (DOPC, DOPE, DOPS, PI(4,5)P2 50:20:20:10)
Method: helical / : Kefauver JM, Zou L, Desfosses A, Loewith RJ

PDB-8qbd:
Helical reconstruction of yeast eisosome protein Pil1 bound to membrane composed of lipid mixture +PIP2/+sterol (DOPC, DOPE, DOPS, cholesterol, PI(4,5)P2 35:20:20:15:10)
Method: helical / : Kefauver JM, Zou L, Desfosses A, Loewith RJ

PDB-8qbe:
Compact state - Pil1 in native eisosome lattice bound to plasma membrane microdomain
Method: single particle / : Kefauver JM, Zou L, Desfosses A, Loewith RJ

PDB-8qbf:
Compact state - Pil1 dimer with lipid headgroups fitted in native eisosome lattice bound to plasma membrane microdomain
Method: single particle / : Kefauver JM, Zou L, Desfosses A, Loewith RJ

PDB-8qbg:
Stretched state - Pil1 in native eisosome lattice bound to plasma membrane microdomain
Method: single particle / : Kefauver JM, Zou L, Desfosses A, Loewith RJ

EMDB-44389:
Cryo-EM structure of the ZBTB5 BTB domain filament
Method: single particle / : Park J, Hunkeler M, Fischer ES

EMDB-44391:
Cryo-EM structure of the ZBTB9 BTB domain filament
Method: helical / : Park J, Hunkeler M, Fischer ES

PDB-9b9r:
Cryo-EM structure of the ZBTB5 BTB domain filament
Method: single particle / : Park J, Hunkeler M, Fischer ES

PDB-9b9v:
Cryo-EM structure of the ZBTB9 BTB domain filament
Method: helical / : Park J, Hunkeler M, Fischer ES

EMDB-43700:
Cryo-EM map of LKB1-STRADalpha-MO25alpha from TFS Glacios with Gatan Alpine detector at 120 keV
Method: single particle / : Chan LM, Courteau BJ, Verba KA

EMDB-43701:
Cryo-EM map of LKB1-STRADalpha-MO25alpha from TFS Glacios with Gatan Alpine detector at 200 keV
Method: single particle / : Chan LM, Courteau BJ, Verba KA

EMDB-43702:
Cryo-EM map of LKB1-STRADalpha-MO25alpha from TFS Glacios with Gatan K3 detector at 200 keV
Method: single particle / : Chan LM, Courteau BJ, Verba KA

EMDB-18950:
70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.
Method: single particle / : Koller TO, Wilson DN

EMDB-19004:
70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
Method: single particle / : Koller TO, Wilson DN

PDB-8r6c:
70S Escherichia coli ribosome with Paenilamicin B2 bound with A- and P-site tRNA.
Method: single particle / : Koller TO, Wilson DN

PDB-8r8m:
70S Escherichia coli ribosome with Paenilamicin B2 bound with hybrid A/P- and hybrid P/E-tRNA.
Method: single particle / : Koller TO, Wilson DN

EMDB-17164:
Structure of human terminal uridylyltransferase 4 (TUT4, ZCCHC11) in complex with pre-let7g miRNA and Lin28A
Method: single particle / : Gilbert RJ, Yi G, Ye M

PDB-8ost:
Structure of human terminal uridylyltransferase 4 (TUT4, ZCCHC11) in complex with pre-let7g miRNA and Lin28A
Method: single particle / : Gilbert RJ, Yi G, Ye M

EMDB-41260:
SARS-CoV-2 BA.1 S-6P-no-RBD
Method: single particle / : Bu F, Li F, Liu B

EMDB-43506:
Cryo-EM structure of LKB1-STRADalpha-MO25alpha heterocomplex
Method: single particle / : Chan LM, Courteau BJ, Verba KA

PDB-8vsu:
Cryo-EM structure of LKB1-STRADalpha-MO25alpha heterocomplex
Method: single particle / : Chan LM, Courteau BJ, Verba KA

EMDB-36836:
Cryo-EM structure of the human 55S mitoribosome with Tigecycline
Method: single particle / : Li X, Wang M, Cheng J

EMDB-36837:
Cryo-EM structure of the human 39S mitoribosome with Tigecycline
Method: single particle / : Li X, Wang M, Cheng J

EMDB-36838:
Cryo-EM structure of the human 80S ribosome with Tigecycline
Method: single particle / : Li X, Wang M, Cheng J

EMDB-36839:
Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
Method: single particle / : Buschauer R, Beckmann R, Cheng J

EMDB-36945:
Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
Method: single particle / : Buschauer R, Beckmann R, Cheng J

EMDB-38629:
Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA, SERBP1 and eEF2
Method: single particle / : Li X, Wang M, Cheng J

EMDB-38630:
Cryo-EM structure of the human 80S ribosome with Tigecycline, e-tRNA and CCDC124 (40S head Swivelled)
Method: single particle / : Li X, Wang M, Cheng J

EMDB-38631:
Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA
Method: single particle / : Li X, Wang M, Cheng J

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbjlvh1.pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more