[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 27 items for (author: boyington & jc)

EMDB-41048:
Lassa GPC Trimer in complex with Fab 8.11G and nanobody D5
Method: single particle / : Gorman J, Kwong PD

EMDB-41302:
Lassa GPC trimer in complex with Fab GP23
Method: single particle / : Gorman J, Kwong PD

EMDB-26859:
Ligand-free Lassa GPC Trimer with C3 Symmetry
Method: single particle / : Gorman J, Kwong PD

EMDB-26740:
Ligand-free Lassa GPC Trimer with C1 Symmetry
Method: single particle / : Gorman J, Kwong PD

EMDB-26044:
H10ssF: ferritin-based nanoparticle displaying H10 hemagglutinin stabilized stem epitopes
Method: single particle / : Gallagher JR, Harris AK

EMDB-23098:
Cryo-EM structure of the VRC316 clinical trial, vaccine-elicited, human antibody 316-310-1B11 in complex with an H2 CAN05 HA trimer
Method: single particle / : Gorman J, Kwong PD

EMDB-23816:
Cryo-EM structure of the VRC310 clinical trial, vaccine-elicited, human antibody 310-030-1D06 Fab in complex with an H1 NC99 HA trimer
Method: single particle / : Gorman J, Kwong PD

EMDB-22302:
Cryo-EM Structure of Vaccine-Elicited Rhesus Antibody 789-203-3C12 in Complex with Stabilized SI06 (A/Solomon Islands/3/06) Influenza Hemagglutinin Trimer
Method: single particle / : Cerutti G, Gorman J, Kwong PD, Shapiro L

EMDB-22943:
Cryo-EM structure of single ACE2-bound SARS-CoV-2 trimer spike at pH 5.5
Method: single particle / : Gorman J, Rapp M, Kwong PD, Shapiro L

EMDB-22949:
Cryo-EM Structure of Double ACE2-Bound SARS-CoV-2 Trimer Spike at pH 5.5
Method: single particle / : Gorman J, Rapp M, Kwong PD, Shapiro L

EMDB-22950:
Cryo-EM structure of Triple ACE2-bound SARS-CoV-2 Trimer Spike at pH 5.5
Method: single particle / : Gorman J, Rapp M, Kwong PD, Shapiro L

EMDB-22922:
ACE2-RBD Focused Refinement Using Symmetry Expansion of Applied C3 for Triple ACE2-bound SARS-CoV-2 Trimer Spike at pH 7.4
Method: single particle / : Gorman J, Kwong PD, Shapiro L

EMDB-22927:
Cryo-EM structure of triple ACE2-bound SARS-CoV-2 trimer spike at pH 7.4
Method: single particle / : Gorman J, Kwong PD, Shapiro L

EMDB-22932:
Cryo-EM structure of double ACE2-bound SARS-CoV-2 trimer Spike at pH 7.4
Method: single particle / : Gorman J, Kwong PD, Shapiro L

EMDB-22941:
Cryo-EM structure of single ACE2-bound SARS-CoV-2 trimer spike at pH 7.4
Method: single particle / : Gorman J, Kwong PD, Shapiro L

EMDB-22515:
Structure of SARS-CoV-2 spike at pH 4.5
Method: single particle / : Tsybovsky Y, Zhou T, Kwong PD

EMDB-22251:
Structure of SARS-CoV-2 spike at pH 4.0
Method: single particle / : Tsybovsky Y, Zhou T, Olia A, Kwong PD

EMDB-22253:
Consensus structure of SARS-CoV-2 spike at pH 5.5
Method: single particle / : Tsybovsky Y, Zhou T, Olia A, Kwong PD

EMDB-22254:
Structure of SARS-CoV-2 spike at pH 5.5, single RBD up, conformation 1
Method: single particle / : Tsybovsky Y, Zhou T, Olia A, Kwong PD

EMDB-22255:
Structure of SARS-CoV-2 spike at pH 5.5, single RBD up, conformation 2
Method: single particle / : Tsybovsky Y, Zhou T, Olia A, Kwong PD

EMDB-22256:
Structure of SARS-CoV-2 spike at pH 5.5, all RBDs down
Method: single particle / : Tsybovsky Y, Zhou T, Olia A, Kwong PD

EMDB-21383:
Cryo-EM Structure of CAP256-VRC26.25 Fab bound to HIV-1 Env trimer CAP256.wk34.c80 SOSIP.RnS2
Method: single particle / : Gorman J, Kwong PD

EMDB-21372:
Cryo-EM structure of stabilized HIV-1 Env trimer CAP256.wk34.c80 SOSIP.RnS2
Method: single particle / : Gorman J, Kwong PD

EMDB-20911:
Group 1 H1 influenza stem nanoparticle with a group 2-like N-linked glycosylation site at position 38
Method: single particle / : Tsybovsky Y, Stephens T, Kanekiyo M, Graham BS

EMDB-20912:
Group 1 H1 influenza stem nanoparticle with an H38R mutation
Method: single particle / : Tsybovsky Y, Stephens T, Kanekiyo M, Graham BS

EMDB-20913:
Group 1 H1 influenza stem nanoparticle
Method: single particle / : Tsybovsky Y, Stephens T, Kanekiyo M, Graham BS

EMDB-6332:
3D reconstruction of a ferritin-based nanoparticle displaying H1 Hemagglutinin stem epitopes
Method: single particle / : Gallagher JR, Harris AK, Yassine HM, Boyington JC, McTamney PM, Wei CJ, Masaru M, Kong WP, Wang L, Zhang Y, Joyce MG, Lingwood D, Moin SM, Andersen H, Okuno Y, Rao SS, Kwong PD, Mascola JR, Nabel GJ, Graham BS

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more