[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 96 items for (author: blanco & a)

EMDB-16453:
SARS-CoV-2 Omicron Variant Spike Trimer in complex with three 17T2 Fabs
Method: single particle / : Modrego A, Carlero D, Bueno-Carrasco MT, Santiago C, Carolis C, Arranz R, Blanco J, Magri G

EMDB-16473:
SARS-CoV-2 spike in complex with the 17T2 neutralizing antibody Fab fragment (local refinement of RBD and Fab)
Method: single particle / : Modrego A, Carlero D, Bueno-Carrasco MT, Santiago C, Carolis C, Arranz R, Blanco J, Magri G

PDB-8c89:
SARS-CoV-2 spike in complex with the 17T2 neutralizing antibody Fab fragment (local refinement of RBD and Fab)
Method: single particle / : Modrego A, Carlero D, Bueno-Carrasco MT, Santiago C, Carolis C, Arranz R, Blanco J, Magri G

EMDB-16556:
21S ribosomal precursors induced by heat shock.
Method: single particle / : Giudice E, Georgeault S, Lavigne R, Pineau C, Trautwetter A, Ermel G, Blanco C, Gillet R

EMDB-13177:
Ser40 phosphorylated tyrosine hydroxylase
Method: single particle / : Bueno-Carrasco MT, Cuellar J

EMDB-23757:
Cryo-electron microscopy structure of TnsC(1-503)A225V bound to DNA
Method: single particle / : Shen Y, Ortega J, Guarne A

PDB-7mcs:
Cryo-electron microscopy structure of TnsC(1-503)A225V bound to DNA
Method: single particle / : Shen Y, Ortega J, Guarne A

EMDB-13442:
Partial structure of tyrosine hydroxylase lacking the first 35 residues in complex with dopamine.
Method: single particle / : Bueno-Carrasco MT, Cuellar J, Santiago C, Valpuesta JM, Martinez A, Flydal MI

PDB-7pim:
Partial structure of tyrosine hydroxylase lacking the first 35 residues in complex with dopamine.
Method: single particle / : Bueno-Carrasco MT, Cuellar J, Santiago C, Valpuesta JM, Martinez A, Flydal MI

EMDB-11309:
Partial structure of tyrosine hydroxylase in complex with dopamine showing the catalytic domain and an alpha-helix from the regulatory domain involved in dopamine binding.
Method: single particle / : Bueno-Carrasco MT, Cuellar J, Santiago C, Valpuesta JM, Martinez A, Flydal MI

PDB-6zn2:
Partial structure of tyrosine hydroxylase in complex with dopamine showing the catalytic domain and an alpha-helix from the regulatory domain involved in dopamine binding.
Method: single particle / : Bueno-Carrasco MT, Cuellar J, Santiago C, Valpuesta JM, Martinez A, Flydal MI

EMDB-11624:
Full-length structure of the substrate-free tyrosine hydroxylase (apo-TH).
Method: single particle / : Bueno-Carrasco MT, Cuellar J, Santiago C, Flydal MI, Martinez A, Valpuesta JM

PDB-7a2g:
Full-length structure of the substrate-free tyrosine hydroxylase (apo-TH).
Method: single particle / : Bueno-Carrasco MT, Cuellar J, Santiago C, Flydal MI, Martinez A, Valpuesta JM

EMDB-11467:
Atomic model of the EM-based structure of the full-length tyrosine hydroxylase in complex with dopamine (residues 40-497) in which the regulatory domain (residues 40-165) has been included only with the backbone atoms
Method: single particle / : Bueno-Carrasco MT, Cuellar J, Santiago C, Valpuesta JM, Martinez A, Flydal MI

EMDB-11587:
Partial structure of the substrate-free tyrosine hydroxylase (apo-TH).
Method: single particle / : Bueno-Carrasco MT, Cuellar J, Santiago C, Valpuesta JM, Martinez A, Flydal MI

PDB-6zvp:
Atomic model of the EM-based structure of the full-length tyrosine hydroxylase in complex with dopamine (residues 40-497) in which the regulatory domain (residues 40-165) has been included only with the backbone atoms
Method: single particle / : Bueno-Carrasco MT, Cuellar J, Santiago C, Valpuesta JM, Martinez A, Flydal MI

PDB-6zzu:
Partial structure of the substrate-free tyrosine hydroxylase (apo-TH).
Method: single particle / : Bueno-Carrasco MT, Cuellar J, Santiago C, Valpuesta JM, Martinez A, Flydal MI

EMDB-22490:
Structure of human TRPA1 in complex with antagonist compound 21
Method: single particle / : Rohou A, Rouge L, Chen H

PDB-7jup:
Structure of human TRPA1 in complex with antagonist compound 21
Method: single particle / : Rohou A, Rouge L

EMDB-21688:
Structure of human TRPA1 in complex with inhibitor GDC-0334
Method: single particle / : Rohou A, Rouge L, Arthur CP

PDB-6wj5:
Structure of human TRPA1 in complex with inhibitor GDC-0334
Method: single particle / : Rohou A, Rouge L, Arthur CP, Volgraf M, Chen H

EMDB-21558:
30S-Activated-high-Mg2+
Method: single particle / : Jahagirdar D, Jha V

EMDB-21569:
30S-Inactivated-high-Mg2+ Class A
Method: single particle / : Jahagirdar D, Jha V

EMDB-21570:
30S-Inactive-high-Mg2+ Class B
Method: single particle / : Ortega J

EMDB-21571:
30S-Inactive-high-Mg2+ + carbon layer
Method: single particle / : Jahagirdar D, Jha V

EMDB-21572:
30S-Inactive-low-Mg2+ Class A
Method: single particle / : Jahagirdar D, Jha V

EMDB-21573:
30S-Inactive-low-Mg2+ Class B
Method: single particle / : Jahagirdar D, Jha V

EMDB-22690:
30S-Inactive-low-Mg2+ Carbon
Method: single particle / : Jahagirdar D, Jha V, Basu B, Gomez-Blanco J, Vargas J, Ortega J

PDB-6w6k:
30S-Activated-high-Mg2+
Method: single particle / : Jahagirdar D, Jha V, Basu B, Gomez-Blanco J, Vargas J, Ortega J

PDB-6w77:
30S-Inactivated-high-Mg2+ Class A
Method: single particle / : Jahagirdar D, Jha V, Basu B, Gomez-Blanco J, Vargas J, Ortega J

PDB-6w7m:
30S-Inactive-high-Mg2+ + carbon layer
Method: single particle / : Jahagirdar D, Jha V, Basu B, Gomez-Blanco J, Vargas J, Ortega J

PDB-6w7n:
30S-Inactive-low-Mg2+ Class A
Method: single particle / : Jahagirdar D, Jha V, Basu B, Gomez-Blanco J, Vargas J, Ortega J

PDB-6w7w:
30S-Inactive-low-Mg2+ Class B
Method: single particle / : Jahagirdar D, Jha V, Basu B, Gomez-Blanco J, Vargas J, Ortega J

EMDB-4551:
Near Atomic Structure of an Atadenovirus Shows a possible gene duplication event and Intergenera Variations in Cementing Proteins
Method: single particle / : Condezo GN, Marabini R, Gomez-Blanco J, SanMartin C

PDB-6qi5:
Near Atomic Structure of an Atadenovirus Shows a possible gene duplication event and Intergenera Variations in Cementing Proteins
Method: single particle / : Condezo GN, Marabini R, Gomez-Blanco J, SanMartin C

EMDB-11008:
Icosahedral reconstruction of human adenovirus D26 capsid
Method: single particle / : Huiskonen JT, Abrishami V

EMDB-11012:
Localized reconstruction of human adenovirus D26 hexon type 3
Method: single particle / : Huiskonen JT, Abrishami V

EMDB-11009:
Localized reconstruction of the trimeric fibre and its interactions with the penton base of human adenovirus HAdV-D26
Method: single particle / : Huiskonen JT, Abrishami V

EMDB-11010:
Localized reconstruction of human adenovirus D26 hexon type 1
Method: single particle / : Huiskonen JT, Abrishami V

EMDB-11011:
Localized reconstruction of human adenovirus D26 hexon type 2
Method: single particle / : Huiskonen JT, Abrishami V

EMDB-11013:
Localized reconstruction of human adenovirus D26 hexon type 4
Method: single particle / : Huiskonen JT, Abrishami V

EMDB-10080:
Human polymerase delta holoenzyme Conformer 1
Method: single particle / : Lancey C, Hamdan SM, De Biasio A

EMDB-10081:
Human polymerase delta holoenzyme Conformer 2
Method: single particle / : Lancey C, Hamdan SM, De Biasio A

EMDB-10082:
Human polymerase delta holoenzyme Conformer 3
Method: single particle / : Lancey C, Hamdan SM, De Biasio A

PDB-6s1m:
Human polymerase delta holoenzyme Conformer 1
Method: single particle / : Lancey C, Hamdan SM, De Biasio A

PDB-6s1n:
Human polymerase delta holoenzyme Conformer 2
Method: single particle / : Lancey C, Hamdan SM, De Biasio A

PDB-6s1o:
Human polymerase delta holoenzyme Conformer 3
Method: single particle / : Lancey C, Hamdan SM, De Biasio A

EMDB-10539:
Processive human polymerase delta holoenzyme
Method: single particle / : Lancey C, Hamdan SM, De Biasio A

EMDB-10540:
Human polymerase delta-FEN1-PCNA toolbelt
Method: single particle / : Lancey C, Hamdan SM, De Biasio A

PDB-6tny:
Processive human polymerase delta holoenzyme
Method: single particle / : Lancey C, Hamdan SM, De Biasio A

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more