[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 44 items for (author: berman & h)

EMDB-27500:
EBNA1 DNA binding domain (DBD) (458-617)+2 repeats of family repeat (FR) region
Method: single particle / : Mei Y, Lieberman PM, Murakami K

PDB-8dlf:
EBNA1 DNA binding domain (DBD) (458-617)+2 repeats of family repeat (FR) region
Method: single particle / : Mei Y, Lieberman PM, Murakami K

EMDB-23481:
Cryo-EM structure of OmcZ nanowire from Geobacter sulfurreducens
Method: helical / : Gu Y, Srikanth V, Malvankar NS, Samatey FA

PDB-7lq5:
Cryo-EM structure of OmcZ nanowire from Geobacter sulfurreducens
Method: helical / : Gu Y, Srikanth V, Malvankar NS, Samatey FA

EMDB-13453:
Cryo-EM structure of the agonist setmelanotide bound to the active melanocortin-4 receptor (MC4R) in complex with the heterotrimeric Gs protein at 2.6 A resolution.
Method: single particle / : Heyder NA, Schmidt A, Kleinau G, Hilal T, Scheerer P

EMDB-13454:
Active Melanocortin-4 receptor (MC4R)- Gs protein complex bound to agonist NDP-alpha-MSH at 2.86 A resolution.
Method: single particle / : Heyder NA, Schmidt A, Kleinau G, Hilal T, Scheerer P

PDB-7piu:
Cryo-EM structure of the agonist setmelanotide bound to the active melanocortin-4 receptor (MC4R) in complex with the heterotrimeric Gs protein at 2.6 A resolution.
Method: single particle / : Heyder NA, Schmidt A, Kleinau G, Hilal T, Scheerer P

PDB-7piv:
Active Melanocortin-4 receptor (MC4R)- Gs protein complex bound to agonist NDP-alpha-MSH at 2.86 A resolution.
Method: single particle / : Heyder NA, Schmidt A, Kleinau G, Hilal T, Scheerer P

EMDB-24077:
CryoEM structure of neutralizing nanobody Nb30 in complex with SARS-CoV2 spike
Method: single particle / : Xu K, Kwong PD

EMDB-24078:
CryoEM structure of neutralizing nanobody Nb12 in complex with SARS-CoV2 spike
Method: single particle / : Xu K, Kwong PD

PDB-7my2:
CryoEM structure of neutralizing nanobody Nb30 in complex with SARS-CoV2 spike
Method: single particle / : Xu K, Kwong PD

PDB-7my3:
CryoEM structure of neutralizing nanobody Nb12 in complex with SARS-CoV2 spike
Method: single particle / : Xu K, Kwong PD

EMDB-21161:
Pore-forming protein
Method: single particle / : Xia S, Ruan J, Wu H

EMDB-21160:
Gasdermin D pore
Method: single particle / : Xia S, Ruan J, Wu H

PDB-6vfe:
Gasdermin D pore
Method: single particle / : Xia S, Ruan J, Wu H

EMDB-21514:
map of the mammalian Mediator complex
Method: single particle / : Zhao H, Young N, Asturias F

PDB-6w1s:
Atomic model of the mammalian Mediator complex
Method: single particle / : Zhao H, Young N, Asturias F

EMDB-23393:
Structure of the SARS-CoV-2 spike trimer in complex with mRNA vaccine induced neutralizing antibody C601
Method: single particle / : Barnes CO, Bjorkman PJ

EMDB-23394:
Structure of the SARS-CoV-2 spike trimer in complex with mRNA vaccine induced neutralizing antibody C603
Method: single particle / : Yang Z, Barnes CO, Bjorkman PJ

EMDB-23395:
Structure of the SARS-CoV-2 spike trimer in complex with mRNA vaccine induced neutralizing antibody C643
Method: single particle / : Barnes CO, Bjorkman PJ

EMDB-23396:
Structure of the SARS-CoV-2 spike trimer in complex with mRNA vaccine induced neutralizing antibody C663
Method: single particle / : Barnes CO, Bjorkman PJ

EMDB-23397:
Structure of the SARS-CoV-2 spike trimer in complex with mRNA vaccine induced neutralizing antibody C666
Method: single particle / : Barnes CO, Bjorkman PJ

EMDB-23398:
Structure of the SARS-CoV-2 spike trimer in complex with mRNA vaccine induced neutralizing antibody C669
Method: single particle / : Barnes CO, Bjorkman PJ

EMDB-23399:
Structure of the SARS-CoV-2 spike trimer in complex with mRNA vaccine induced neutralizing antibody C670
Method: single particle / : Yang Z, Barnes CO, Bjorkman PJ

EMDB-10417:
GroEL map obtained using the Preassis method for grid preparation
Method: single particle / : Zhao J, Xu H, Carroni M, Zou X

EMDB-10466:
Cryo-ET on GroEL
Method: electron tomography / : Zou XD, Zhao JJ, Xu HY, Carroni M

EMDB-22681:
SARS-COV-2 nsp1 in complex with human 40S ribosome
Method: single particle / : Wang L, Shi M, Wu H

PDB-7k5i:
SARS-COV-2 nsp1 in complex with human 40S ribosome
Method: single particle / : Wang L, Shi M, Wu H

EMDB-10462:
Leishmania tarentolae proteasome 20S subunit complexed with LXE408
Method: single particle / : Srinivas H

EMDB-10463:
Leishmania tarentolae proteasome 20S subunit complexed with LXE408 and bortezomib
Method: single particle / : Srinivas H

PDB-6tcz:
Leishmania tarentolae proteasome 20S subunit complexed with LXE408
Method: single particle / : Srinivas H

PDB-6td5:
Leishmania tarentolae proteasome 20S subunit complexed with LXE408 and bortezomib
Method: single particle / : Srinivas H

EMDB-20391:
CryoEM structure of mouse mediator subunit one deletion
Method: single particle / : Asturias F, Zhao H, Young N

EMDB-20392:
CryoEM structure of wild type mouse mediator with MED19-FLAG
Method: single particle / : Asturias F, Zhao H

EMDB-20393:
CryoEM structure of wild type mediator with MED25-FLAG
Method: single particle / : Asturias F, Zhao H

EMDB-7450:
Cryo-EM structure of the Gasdermin A3 membrane pore
Method: single particle / : Ruan J, Xia S, Wu H

EMDB-7451:
Cryo-EM structure of the Gasdermin A3 membrane pore
Method: single particle / : Ruan J, Xia S, Wu H

EMDB-7449:
Cryo-EM structure of the Gasdermin A3 membrane pore
Method: single particle / : Ruan J, Wu H

PDB-6cb8:
Cryo-EM structure of the Gasdermin A3 membrane pore
Method: single particle / : Ruan J, Wu H

EMDB-2103:
Heritable yeast prions have a highly organized 3-dimensional architecture with inter-fiber structures
Method: subtomogram averaging / : Frangakis A, Saibil HR

EMDB-2104:
Heritable yeast prions have a highly organized 3-dimensional architecture with inter-fiber structures
Method: subtomogram averaging / : Frangakis A, Saibil HR

PDB-3iyd:
Three-dimensional EM structure of an intact activator-dependent transcription initiation complex
Method: single particle / : Hudson BP, Quispe J, Lara S, Kim Y, Berman H, Arnold E, Ebright RH, Lawson CL

EMDB-5127:
Three-dimensional EM structure of an intact activator-dependent transcription initiation complex
Method: single particle / : Hudson BP, Quispe J, Lara S, Kim Y, Berman HM, Arnold E, Ebright RH, Lawson CL

EMDB-1050:
The cyanide degrading nitrilase from Pseudomonas stutzeri AK61 is a two-fold symmetric, 14-subunit spiral.
Method: single particle / : Sewell BT, Berman MN, Meyers PR, Jandhyala D, Benedik MJ

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more