[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 31 items for (author: barandun & j)

EMDB-17391:
Subtomogram average of ribosomes in germinated polar tubes of Vairimorpha necatrix
Method: subtomogram averaging / : Sharma H, Ehrenbolger K, Jespersen N, Carlson LA, Barandun J

EMDB-17467:
Subtomogram representing a segment of the outer wall of empty germinated polar tubes from Vairimorpha necatrix.
Method: subtomogram averaging / : Sharma H, Ehrenbolger K, Jespersen N, Carlson LA, Barandun J

EMDB-17468:
Subtomogram representing a segment of the outer wall of cargo-filled, germinated polar tubes from Vairimorpha necatrix.
Method: subtomogram averaging / : Sharma H, Ehrenbolger K, Jespersen N, Carlson LA, Barandun J

EMDB-15311:
Dedicated chaperone at the ribosome safeguards the proteostasis network during eEF1A biogenesis
Method: single particle / : Minoia M, Quintana-Cordero J, Katharina J, Kotan I, Turnbull KJ, Masser AE, Merker D, Gouarin E, Ehrenbolger K, Barandun J, Hauryliuk V, Bukau B, Kramer G, Andreasson C

EMDB-15365:
Vairimorpha necatrix 20S proteasome from spores
Method: single particle / : Jespersen N, Ehrenbolger K, Winiger R, Svedberg D, Vossbrinck CR, Barandun J

EMDB-15366:
Vairimorpha necatrix 26S proteasome from sporoplasms
Method: single particle / : Jespersen N, Ehrenbolger K, Winiger R, Svedberg D, Vossbrinck CR, Barandun J

EMDB-15367:
Vairimorpha necatrix 20S proteasome from sporoplasms
Method: single particle / : Jespersen N, Ehrenbolger K, Winiger R, Svedberg D, Vossbrinck CR, Barandun J

PDB-8adn:
Vairimorpha necatrix 20S proteasome from spores
Method: single particle / : Jespersen N, Ehrenbolger K, Winiger R, Svedberg D, Vossbrinck CR, Barandun J

EMDB-12816:
Enterococcus faecalis EfrCD in complex with a nanobody
Method: single particle / : Ehrenbolger K, Hutter CAJ, Meier G, Seeger MA, Barandun J

PDB-7ocy:
Enterococcus faecalis EfrCD in complex with a nanobody
Method: single particle / : Ehrenbolger K, Hutter CAJ, Meier G, Seeger MA, Barandun J

EMDB-13185:
Helical structure of the toxin MakA from Vibrio cholera
Method: helical / : Berg A, Nadeem A, Uhlin BE, Wai SN, Barandun J

PDB-7p3r:
Helical structure of the toxin MakA from Vibrio cholera
Method: helical / : Berg A, Nadeem A, Uhlin BE, Wai SN, Barandun J

EMDB-11437:
Structure of the Paranosema locustae ribosome in complex with Lso2
Method: single particle / : Ehrenbolger K, Jespersen N, Sharma H, Sokolova YY, Tokarev YS, Vossbrinck CR, Barandun J

PDB-6zu5:
Structure of the Paranosema locustae ribosome in complex with Lso2
Method: single particle / : Ehrenbolger K, Jespersen N, Sharma H, Sokolova YY, Tokarev YS, Vossbrinck CR, Barandun J

EMDB-4931:
Cryo-EM structure of the microsporidian ribosome: Multibody-refined map body 1 (LSU)
Method: single particle / : Barandun J, Hunziker M, Vossbrinck CR, Klinge S

EMDB-4932:
Cryo-EM structure of the microsporidian ribosome: Multibody-refined map body 2 (SSU-body)
Method: single particle / : Barandun J, Hunziker M, Vossbrinck CR, Klinge S

EMDB-4933:
Cryo-EM structure of the microsporidian ribosome: Multibody-refined map body 3 (SSU-head)
Method: single particle / : Barandun J, Hunziker M, Vossbrinck CR, Klinge S

EMDB-4934:
Cryo-EM structure of the microsporidian ribosome: State 1, Multibody-refined map body 3 (SSU-head)
Method: single particle / : Barandun J, Hunziker M, Vossbrinck CR, Klinge S

EMDB-4935:
Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome
Method: single particle / : Barandun J, Hunziker M, Vossbrinck CR, Klinge S

PDB-6rm3:
Evolutionary compaction and adaptation visualized by the structure of the dormant microsporidian ribosome
Method: single particle / : Barandun J, Hunziker M, Vossbrinck CR, Klinge S

EMDB-0441:
Conformational switches control early maturation of the eukaryotic small ribosomal subunit
Method: single particle / : Hunziker M, Barandun J

PDB-6nd4:
Conformational switches control early maturation of the eukaryotic small ribosomal subunit
Method: single particle / : Hunziker M, Barandun J, Klinge S

EMDB-7324:
Yeast nucleolar pre-60S ribosomal subunit (state 2)
Method: single particle / : Sanghai ZA, Miller L, Barandun J, Hunziker M, Chaker-Margot M, Klinge S

EMDB-7445:
Yeast nucleolar pre-60S ribosomal subunit (state 3)
Method: single particle / : Sanghai ZA, Miller L

PDB-6c0f:
Yeast nucleolar pre-60S ribosomal subunit (state 2)
Method: single particle / : Sanghai ZA, Miller L, Barandun J, Hunziker M, Chaker-Margot M, Klinge S

PDB-6cb1:
Yeast nucleolar pre-60S ribosomal subunit (state 3)
Method: single particle / : Sanghai ZA, Miller L, Barandun J, Hunziker M, Chaker-Margot M, Klinge S

EMDB-8859:
The complete structure of the small subunit processome
Method: single particle / : Barandun J, Chaker-Margot M

PDB-5wlc:
The complete structure of the small subunit processome
Method: single particle / : Barandun J, Chaker-Margot M, Hunziker M, Klinge S

EMDB-8473:
Architecture of the yeast small subunit processome
Method: single particle / : Chaker-Margot M, Barandun J

PDB-5tzs:
Architecture of the yeast small subunit processome
Method: single particle / : Chaker-Margot M, Barandun J, Hunziker M, Klinge S

EMDB-8223:
Random conical tilt reconstruction of Saccharomyces cerevisiae UtpB
Method: single particle / : Barandun J, Hunziker M, Tan D, Kim KH, Walz T, Klinge S

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more