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Showing 1 - 50 of 62 items for (author: baker, & d.)

PDB-8glt:
Backbone model of de novo-designed chlorophyll-binding nanocage O32-15
Method: single particle / : Redler RL, Ennist NM, Wang S, Baker D, Ekiert DC, Bhabha G

PDB-8gel:
Cryo-EM structure of synthetic tetrameric building block sC4
Method: single particle / : Redler RL, Huddy TF, Hsia Y, Baker D, Ekiert D, Bhabha G

PDB-8f6q:
CryoEM structure of designed modular protein oligomer C8-71
Method: single particle / : Redler RL, Edman NI, Baker D, Ekiert D, Bhabha G

PDB-8f6r:
CryoEM structure of designed modular protein oligomer C6-79
Method: single particle / : Redler RL, Edman NI, Baker D, Ekiert D, Bhabha G

PDB-8cwy:
Accurate computational design of genetically encoded 3D protein crystals
Method: single particle / : Li Z, Borst AJ, Baker D

PDB-8tcf:
Integrin alpha-v beta-8 in complex with minibinder B8_BP_dsulf
Method: single particle / : Campbell MG, Fernandez A, Roy A, Kraft J, Baker D

PDB-8tcg:
Integrin alpha-v beta-6 in complex with minibinder B6_BP_dslf
Method: single particle / : Campbell MG, Fernandez A, Roy A, Kraft J, Baker D

PDB-8gaa:
C6HR1_4r: Extendable repeat protein hexamer
Method: single particle / : Bethel NP, Borst AJ, Baker D

PDB-8fwd:
Fast and versatile sequence- independent protein docking for nanomaterials design using RPXDock
Method: single particle / : Skotheim R, Borst AJ, Baker D

PDB-8f4x:
Top-down design of protein architectures with reinforcement learning
Method: single particle / : Borst AJ, Baker D

PDB-8f53:
Top-down design of protein architectures with reinforcement learning
Method: single particle / : Borst AJ, Baker D

PDB-8f54:
Top-down design of protein architectures with reinforcement learning
Method: single particle / : Borst AJ, Baker D

PDB-8fne:
phiPA3 PhuN Tetramer, p2
Method: single particle / : Nieweglowska ES, Brilot AF, Mendez-Moran M, Kokontis C, Baek M, Li J, Cheng Y, Baker D, Bondy-Denomy J, Agard DA

PDB-8fv5:
Representation of 16-mer phiPA3 PhuN Lattice, p2
Method: single particle / : Nieweglowska ES, Brilot AF, Mendez-Moran M, Kokontis C, Baek M, Li J, Cheng Y, Baker D, Bondy-Denomy J, Agard DA

PDB-8e55:
Design of Diverse Asymmetric Pockets in de novo Homo-oligomeric Proteins
Method: single particle / : Gerben S, Borst AJ, Baker D

PDB-8eaq:
Structure of the full-length IP3R1 channel determined at high Ca2+
Method: single particle / : Fan G, Baker MR, Terry LE, Arige V, Chen M, Seryshev AB, Baker ML, Ludtke SJ, Yule DI, Serysheva II

PDB-8ear:
Structure of the full-length IP3R1 channel determined in the presence of Calcium/IP3/ATP
Method: single particle / : Fan G, Baker MR, Terry LE, Arige V, Chen M, Seryshev AB, Baker ML, Ludtke SJ, Yule DI, Serysheva II

PDB-7rd1:
The Capsid Structure of the ChAdOx1 viral vector/chimpanzee adenovirus Y25
Method: single particle / : Baker AT, Boyd RJ, Sarkar D, Vermaas JV, Williams D, Singharoy A

PDB-7bho:
DNA origami signpost designed model
Method: subtomogram averaging / : Silvester E, Vollmer B, Prazak V, Vasishtan D, Machala EA, Whittle C, Black S, Bath J, Turberfield AJ, Gruenewald K, Baker LA

PDB-6xss:
CryoEM structure of designed helical fusion protein C4_nat_HFuse-7900
Method: single particle / : Redler RL, Edman NI, Baker D, Ekiert D, Bhabha G

PDB-6u1s:
Cryo-EM structure of a de novo designed 16-helix transmembrane nanopore, TMHC8_R.
Method: single particle / : Johnson MJ, Reggiano G, Xu C, Lu P, Hsia Y, Brunette TJ, DiMaio F, Baker D, Kollman J

PDB-6m6z:
A de novo designed transmembrane nanopore, TMH4C4
Method: single particle / : Lu P, Xu C, Reggiano G, Xu Q, DiMaio F, Baker D

PDB-6me0:
Structure of a group II intron retroelement prior to DNA integration
Method: single particle / : Haack D, Yan X, Zhang C, Hingey J, Lyumkis D, Baker TS, Toor N

PDB-6mec:
Structure of a group II intron retroelement after DNA integration
Method: single particle / : Haack D, Yan X, Zhang C, Hingey J, Lyumkis D, Baker TS, Toor N

PDB-6e9r:
DHF46 filament
Method: helical / : Lynch EM, Shen H, Fallas JA, Kollman JM, Baker D

PDB-6e9t:
DHF58 filament
Method: helical / : Lynch EM, Shen H, Fallas JA, Kollman JM, Baker D

PDB-6e9v:
DHF79 filament
Method: helical / : Lynch EM, Shen H, Fallas JA, Kollman JM, Baker D

PDB-6e9x:
DHF91 filament
Method: helical / : Lynch EM, Shen H, Fallas JA, Kollman JM, Baker D

PDB-6e9y:
DHF38 filament
Method: helical / : Lynch EM, Shen H, Fallas JA, Kollman JM, Baker D

PDB-6e9z:
DHF119 filament
Method: helical / : Lynch EM, Shen H, Fallas JA, Kollman JM, Baker D

PDB-6e9d:
Sub-2 Angstrom Ewald Curvature-Corrected Single-Particle Cryo-EM Reconstruction of AAV-2 L336C
Method: single particle / : Tan YZ, Aiyer S, Mietzsch M, Hull JA, McKenna R, Baker TS, Agbandje-McKenna M, Lyumkis D

PDB-5urf:
The structure of human bocavirus 1
Method: single particle / : Mietzsch M, Kailasan S, Garrison J, Ilyas M, Chipman P, Kandola K, Jansen M, Spear J, Sousa D, McKenna R, Soderlund-Venermo M, Baker T, Agbandje-McKenna M

PDB-3j9g:
Atomic model of the VipA/VipB, the type six secretion system contractile sheath of Vibrio cholerae from cryo-EM
Method: helical / : Kudryashev M, Wang RY-R, Brackmann M, Scherer S, Maier T, Baker D, DiMaio F, Stahlberg H, Egelman EH, Basler M

PDB-3j89:
Structural Plasticity of Helical Nanotubes Based on Coiled-Coil Assemblies
Method: helical / : Egelman EH, Xu C, DiMaio F, Magnotti E, Modlin C, Yu X, Wright E, Baker D, Conticello VP

PDB-2mme:
Hybrid structure of the Shigella flexneri MxiH Type three secretion system needle
Method: helical / : Demers JP, Habenstein B, Loquet A, Vasa SK, Becker S, Baker D, Lange A, Sgourakis NG

PDB-3j7l:
Full virus map of brome mosaic virus
Method: single particle / : Wang Z, Hryc C, Bammes B, Afonine PV, Jakana J, Chen DH, Liu X, Baker ML, Kao C, Ludtke SJ, Schmid MF, Adams PD, Chiu W

PDB-3j7m:
Virus model of brome mosaic virus (first half data set)
Method: single particle / : Wang Z, Hryc C, Bammes B, Afonine PV, Jakana J, Chen DH, Liu X, Baker ML, Kao C, Ludtke SJ, Schmid MF, Adams PD, Chiu W

PDB-3j7n:
Virus model of brome mosaic virus (second half data set)
Method: single particle / : Wang Z, Hryc C, Bammes B, Afonine PV, Jakana J, Chen DH, Liu X, Baker ML, Kao C, Ludtke SJ, Schmid MF, Adams PD, Chiu W

PDB-3j6e:
Energy minimized average structure of Microtubules stabilized by GmpCpp
Method: single particle / : Alushin GM, Lander GC, Kellogg EH, Zhang R, Baker D, Nogales E

PDB-3j6f:
Minimized average structure of GDP-bound dynamic microtubules
Method: single particle / : Alushin GM, Lander GC, Kellogg EH, Zhang R, Baker D, Nogales E

PDB-3j6g:
Minimized average structure of microtubules stabilized by taxol
Method: single particle / : Alushin GM, Lander GC, Kellogg EH, Zhang R, Baker D, Nogales E

PDB-4bml:
C-alpha backbone trace of major capsid protein gp39 found in marine virus Syn5.
Method: single particle / : Gipson P, Baker ML, Raytcheva D, Haase-Pettingell C, Piret J, King J, Chiu W

PDB-3j40:
Validated Near-Atomic Resolution Structure of Bacteriophage Epsilon15 Derived from Cryo-EM and Modeling
Method: single particle / : Baker ML, Hryc CF, Zhang Q, Wu W, Jakana J, Haase-Pettingell C, Afonine PV, Adams PD, King JA, Jiang W, Chiu W

PDB-3j3x:
Independent reconstruction of Mm-cpn cryo-EM density map from half dataset in the closed state (training map)
Method: single particle / : DiMaio F, Zhang J, Chiu W, Baker D

PDB-3j1v:
A refined model of the prototypical Salmonella typhimurium T3SS basal body reveals the molecular basis for its assembly
Method: single particle / : Sgourakis NG, Bergeron JRC, Strynadka NJC, Baker D

PDB-3j1w:
A refined model of the prototypical Salmonella typhimurium T3SS basal body reveals the molecular basis for its assembly
Method: single particle / : Sgourakis NG, Worrall LJ, Strynadka NCJ, Baker D

PDB-3j1x:
A refined model of the prototypical Salmonella typhimurium T3SS basal body reveals the molecular basis for its assembly
Method: single particle / : Sgourakis NG, Bergeron JRC, Worrall LJ, Strynadka NCJ, Baker D

PDB-3j02:
Lidless D386A Mm-cpn in the pre-hydrolysis ATP-bound state
Method: single particle / : Zhang J, Ma B, DiMaio F, Douglas NR, Joachimiak L, Baker D, Frydman J, Levitt M, Chiu W

PDB-3j03:
Lidless Mm-cpn in the closed state with ATP/AlFx
Method: single particle / : Zhang J, Ma B, DiMaio F, Douglas NR, Joachimiak L, Baker D, Frydman J, Levitt M, Chiu W

PDB-2xyy:
De Novo model of Bacteriophage P22 procapsid coat protein
Method: single particle / : Chen DH, Baker ML, Hryc CF, DiMaio F, Jakana J, Wu W, Dougherty M, Haase-Pettingell C, Schmid MF, Jiang W, Baker D, King JA, Chiu W

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