[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 35 items for (author: asano & s)

EMDB-35411:
Dibekacin-bound E.coli 70S ribosome in the PURE system
Method: single particle / : Tomono J, Asano K, Chiashi T, Tanaka Y, Yokoyama T

EMDB-35412:
Arbekacin-bound E.coli 70S ribosome in the PURE system
Method: single particle / : Tomono J, Asano K, Chiashi T, Tanaka Y, Yokoyama T

EMDB-35413:
Dibekacin-added human 80S ribosome
Method: single particle / : Tomono J, Asano K, Chiashi T, Tanaka Y, Yokoyama T

EMDB-35414:
Arbekacin-added human 80S ribosome
Method: single particle / : Tomono J, Asano K, Chiashi T, Tanaka Y, Yokoyama T

PDB-8ifb:
Dibekacin-bound E.coli 70S ribosome in the PURE system
Method: single particle / : Tomono J, Asano K, Chiashi T, Tanaka Y, Yokoyama T

PDB-8ifc:
Arbekacin-bound E.coli 70S ribosome in the PURE system
Method: single particle / : Tomono J, Asano K, Chiashi T, Tanaka Y, Yokoyama T

PDB-8ifd:
Dibekacin-added human 80S ribosome
Method: single particle / : Tomono J, Asano K, Chiashi T, Tanaka Y, Yokoyama T

PDB-8ife:
Arbekacin-added human 80S ribosome
Method: single particle / : Tomono J, Asano K, Chiashi T, Tanaka Y, Yokoyama T

EMDB-27898:
Cryo-EM structure of human glycerol-3-phosphate acyltransferase 1 (GPAT1) in complex with 2-oxohexadecyl-CoA
Method: single particle / : Johnson ZL, Wasilko DJ, Ammirati M, Chang JS, Han S, Wu H

EMDB-27899:
Cryo-EM structure of human glycerol-3-phosphate acyltransferase 1 (GPAT1) in complex with CoA and palmitoyl-LPA
Method: single particle / : Wasilko DJ, Johnson ZL, Ammirati M, Chang JS, Han S, Wu H

PDB-8e4y:
Cryo-EM structure of human glycerol-3-phosphate acyltransferase 1 (GPAT1) in complex with 2-oxohexadecyl-CoA
Method: single particle / : Johnson ZL, Wasilko DJ, Ammirati M, Chang JS, Han S, Wu H

PDB-8e50:
Cryo-EM structure of human glycerol-3-phosphate acyltransferase 1 (GPAT1) in complex with CoA and palmitoyl-LPA
Method: single particle / : Wasilko DJ, Johnson ZL, Ammirati M, Chang JS, Han S, Wu H

EMDB-14313:
The SARS-CoV-2 spike in complex with the 2.15 neutralizing nanobody
Method: single particle / : Casasnovas JM, Melero R, Arranz R, Fernandez LA

EMDB-14314:
The SARS-CoV-2 spike in complex with the 1.29 neutralizing nanobody
Method: single particle / : Casasnovas JM, Melero R, Arranz R, Fernandez LA

EMDB-14315:
The SARS-CoV-2 spike in complex with the 1.10 neutralizing nanobody
Method: single particle / : Casasnovas JM, Melero R, Arranz R, Fernandez LA

PDB-7r4i:
The SARS-CoV-2 spike in complex with the 2.15 neutralizing nanobody
Method: single particle / : Casasnovas JM, Melero R, Arranz R, Fernandez LA

PDB-7r4q:
The SARS-CoV-2 spike in complex with the 1.29 neutralizing nanobody
Method: single particle / : Casasnovas JM, Melero R, Arranz R, Fernandez LA

PDB-7r4r:
The SARS-CoV-2 spike in complex with the 1.10 neutralizing nanobody
Method: single particle / : Casasnovas JM, Melero R, Arranz R, Fernandez LA

EMDB-22283:
cryo-EM of human GLP-1R bound to non-peptide agonist LY3502970
Method: single particle / : Sun B, Kobilka BK, Sloop KW, Feng D, Kobilka TS

PDB-6xox:
cryo-EM of human GLP-1R bound to non-peptide agonist LY3502970
Method: single particle / : Sun B, Kobilka BK, Sloop KW, Feng D, Kobilka TS

EMDB-4392:
In situ subtomogram average of a bacterial encapsulin expressed in HEK293T cells (no iron treatment)
Method: subtomogram averaging / : Erdmann PS, Plitzko JM

EMDB-4393:
In situ subtomogram average of a bacterial encapsulin expressed in HEK293T cells (after iron treatment)
Method: subtomogram averaging / : Erdmann PS, Plitzko JM

EMDB-3967:
In situ cryo-electron tomogram from Chlamydomonas reinhardtii of the cellular environment around the nuclear envelope
Method: electron tomography / : Albert S, Schaffer M, Beck F, Mosalaganti S, Asano S, Thomas HF, Plitzko J, Beck M, Baumeister W, Engel BD

EMDB-3932:
In situ subtomogram average of the Chlamydomonas double-capped 26S proteasome
Method: subtomogram averaging / : Albert S, Schaffer M, Beck F, Mosalaganti S, Asano S, Thomas HF, Plitzko J, Beck M, Baumeister W, Engel BD

EMDB-3933:
In situ subtomogram average of the Chlamydomonas single-capped 26S proteasome
Method: subtomogram averaging / : Albert S, Schaffer M, Beck F, Mosalaganti S, Asano S, Thomas HF, Plitzko J, Beck M, Baumeister W, Engel BD

EMDB-3934:
In situ subtomogram average of the Chlamydomonas ground state 26S proteasome
Method: subtomogram averaging / : Albert S, Schaffer M, Beck F, Mosalaganti S, Asano S, Thomas HF, Plitzko J, Beck M, Baumeister W, Engel BD

EMDB-3935:
In situ subtomogram average of the Chlamydomonas processing state 26S proteasome
Method: subtomogram averaging / : Albert S, Schaffer M, Beck F, Mosalaganti S, Asano S, Thomas HF, Plitzko J, Beck M, Baumeister W, Engel BD

EMDB-3936:
In situ subtomogram average of the Chlamydomonas membrane-tethered 26S proteasome
Method: subtomogram averaging / : Albert S, Schaffer M, Beck F, Mosalaganti S, Asano S, Thomas HF, Plitzko J, Beck M, Baumeister W, Engel BD

EMDB-3937:
In situ subtomogram average of the Chlamydomonas basket-tethered 26S proteasome
Method: subtomogram averaging / : Albert S, Schaffer M, Beck F, Mosalaganti S, Asano S, Thomas HF, Plitzko J, Beck M, Baumeister W, Engel BD

EMDB-3938:
In situ subtomogram average of the Chlamydomonas free 26S proteasome
Method: subtomogram averaging / : Albert S, Schaffer M, Beck F, Mosalaganti S, Asano S, Thomas HF, Plitzko J, Beck M, Baumeister W, Engel BD

EMDB-3939:
Local refinement of the extra density that tethers 26S proteasomes to the NPC basket
Method: subtomogram averaging / : Albert S, Schaffer M, Beck F, Mosalaganti S, Asano S, Thomas HF, Plitzko J, Beck M, Baumeister W, Engel BD

EMDB-3940:
Local refinement of the extra density that tethers 26S proteasomes to the inner nuclear membrane
Method: subtomogram averaging / : Albert S, Schaffer M, Beck F, Mosalaganti S, Asano S, Thomas HF, Plitzko J, Beck M, Baumeister W, Engel BD

EMDB-3100:
Cryo-electron tomography of a Golgi intracisternal protein array
Method: subtomogram averaging / : Engel BD, Schaffer M, Albert S, Asano S, Plitzko JM, Baumeister W

EMDB-2830:
Electron cryotomography, subtomogram averaging and classification of 26S proteasomes in situ in intact hippocampal neurons
Method: subtomogram averaging / : Asano S, Fukuda Y, Beck F, Aufderheide A, Foerster F, Danev R, Baumeister W

EMDB-2831:
Electron cryotomography, subtomogram averaging and classification of 26S proteasomes in situ in intact hippocampal neurons
Method: subtomogram averaging / : Asano S, Fukuda Y, Beck F, Aufderheide A, Foerster F, Danev R, Baumeister W

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more