[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 74 items for (author: armache & jp)

EMDB-42977:
Cryo-EM structure of singly-bound SNF2h-nucleosome complex with SNF2h at inactive SHL2 (conformation 1)
Method: single particle / : Chio US, Palovcak E, Armache JP, Narlikar GJ, Cheng Y

EMDB-43000:
Cryo-EM structure of SNF2h-nucleosome complex (consensus structure)
Method: single particle / : Chio US, Palovcak E, Armache JP, Narlikar GJ, Cheng Y

EMDB-43001:
Cryo-EM structure of SNF2h-nucleosome complex (single-bound structure)
Method: single particle / : Chio US, Palovcak E, Armache JP, Narlikar GJ, Cheng Y

EMDB-43002:
Cryo-EM structure of doubly-bound SNF2h-nucleosome complex
Method: single particle / : Chio US, Palovcak E, Armache JP, Narlikar GJ, Cheng Y

EMDB-43003:
Cryo-EM structure of singly-bound SNF2h-nucleosome complex with SNF2h at inactive SHL2 (conformation 2)
Method: single particle / : Chio US, Palovcak E, Armache JP, Narlikar GJ, Cheng Y

EMDB-43004:
Cryo-EM structure of doubly-bound SNF2h-nucleosome complex (conformation 1)
Method: single particle / : Chio US, Palovcak E, Armache JP, Narlikar GJ, Cheng Y

EMDB-43005:
Cryo-EM structure of doubly-bound SNF2h-nucleosome complex (conformation 2)
Method: single particle / : Chio US, Palovcak E, Armache JP, Narlikar GJ, Cheng Y

EMDB-41109:
Catalytic and non-catalytic mechanisms of histone H4 lysine 20 methyltransferase SUV420H1
Method: single particle / : Abini-Agbomson S, Armache KJ

EMDB-41113:
Catalytic and non-catalytic mechanisms of histone H4 lysine 20 methyltransferase SUV420H1
Method: single particle / : Abini-Agbomson S, Armache KJ

EMDB-41259:
Catalytic and non-catalytic mechanisms of histone H4 lysine 20 methyltransferase SUV420H1
Method: single particle / : Abini-Agbomson S, Armache KJ

EMDB-41272:
Catalytic and non-catalytic mechanisms of histone H4 lysine 20 methyltransferase SUV420H1
Method: single particle / : Abini-Agbomson S, Armache KJ

EMDB-29735:
Structure of nucleosome-bound Sirtuin 6 deacetylase
Method: single particle / : Chio US, Rechiche O, Bryll AR, Zhu J, Feldman JL, Peterson CL, Tan S, Armache JP

EMDB-28162:
SARS-CoV-2 polyprotein substrate regulates the stepwise Mpro cleavage reaction
Method: single particle / : Narwal M, Edwards T, Armache JP, Murakami KS

EMDB-28200:
Cryo-EM structure of SARS CoV-2 Mpro WT protease
Method: single particle / : Narwal M, Edwards T, Armache JP, Murakami KS

EMDB-25479:
2.3 A structure of the ATP-dependent chromatin remodeler Chd1 bound to the nucleosome in a nucleotide-free state
Method: single particle / : Nodelman IM, Das S, Faustino AM, Fried SD, Bowman GD, Armache JP

EMDB-25480:
2.7 A structure of the ATP-dependent chromatin remodeler Chd1 bound to the nucleosome in a nucleotide-free state. This entry contains a better resolved DNA-binding domain
Method: single particle / : Nodelman IM, Das S, Faustino AM, Fried SD, Bowman GD, Armache JP

EMDB-25481:
2.6 A structure of the nucleosome from a class without Chd1
Method: single particle / : Nodelman IM, Das S, Faustino AM, Fried SD, Bowman GD, Armache JP

EMDB-25483:
2.9 A structure of the nucleosome-bound ChEx, part of the chromatin remodeler Chd1
Method: single particle / : Nodelman IM, Das S, Faustino AM, Fried SD, Bowman GD, Armache JP

EMDB-22691:
Active state Dot1 bound to the unacetylated H4 nucleosome
Method: single particle / : Valencia-Sanchez MI, De Ioannes PE

EMDB-22692:
Active state Dot1 bound to the H4K16ac nucleosome
Method: single particle / : Valencia-Sanchez MI, De Ioannes PE, Miao W, Truong DM, Lee R, Armache JP, Boeke JD, Armache KJ

EMDB-22693:
Noncatalytic conformation Dot1 bound to the unacetylated H4 nucleosome
Method: single particle / : Valencia-Sanchez MI, De Ioannes PE, Miao W, Truong DM, Lee R, Armache JP, Boeke JD, Armache KJ

EMDB-22694:
Active state Dot1 bound to the H4K16ac nucleosome, Ubiquitin focused map
Method: single particle / : Valencia-Sanchez MI, De Ioannes PE, Miao W, Truong DM, Lee R, Armache JP, Boeke JD, Armache KJ

EMDB-22695:
Active state Dot1 bound to the unacetylated H4 nucleosome, Ubiquitin focused map
Method: single particle / : Valencia-Sanchez MI, De Ioannes PE, Miao W, Truong DM, Lee R, Armache JP, Boeke JD, Armache KJ

EMDB-0114:
Cryo-EM structure of the 28 triskelia mini clathrin coat complex
Method: single particle / : Morris KL, Smith CJ

EMDB-0115:
Cryo-EM structure of the 32 triskelia sweet potato clathrin coat complex
Method: single particle / : Morris KL, Smith CJ

EMDB-0116:
Cryo-EM structure of the 36 triskelia D6 barrel clathrin coat complex
Method: single particle / : Morris KL, Smith CJ

EMDB-0118:
Cryo-EM structure of the 36 triskelia tennis ball clathrin coat complex
Method: single particle / : Morris KL, Smith CJ

EMDB-0120:
Cryo-EM structure of the 37 triskelia big apple clathrin coat complex
Method: single particle / : Morris KL, Smith CJ

EMDB-0121:
Cryo-EM structure of the hub of the 28 triskelia mini clathrin coat complex
Method: single particle / : Morris KL, Smith CJ

EMDB-0122:
Cryo-EM structure of the hub of the 32 triskelia sweet potato clathrin coat complex
Method: single particle / : Morris KL, Smith CJ

EMDB-0123:
Cryo-EM structure of the hub of the 36 triskelia D6 barrel clathrin coat complex
Method: single particle / : Morris KL, Smith CJ

EMDB-0124:
Cryo-EM structure of the hub of the 36 triskelia tennis ball clathrin coat complex
Method: single particle / : Morris KL, Smith CJ

EMDB-0125:
Cryo-EM structure of the hub of the 37 triskelia big apple clathrin coat complex
Method: single particle / : Morris KL, Smith CJ

EMDB-0126:
Cryo-EM structure of the consensus hub of the clathrin coat complex
Method: single particle / : Morris KL, Smith CJ

EMDB-9351:
Cryo-EM structure of singly-bound SNF2h-nucleosome complex, with SNF2h bound at SHL+2
Method: single particle / : Armache JP, Gamarra N, Johnson SL, Wu S, Leonard JD, Narlikar GJ, Cheng Y

EMDB-9352:
Cryo-EM structure of singly-bound SNF2h-nucleosome complex at 3.4 A
Method: single particle / : Armache JP, Gamarra N, Johnson SL, Wu S, Leonard JD, Narlikar GJ, Cheng Y

EMDB-9353:
Cryo-EM structure of SNF2h doubly-bound to the nucleosome
Method: single particle / : Armache JP, Gamarra N, Johnson SL, Wu S, Leonard JD, Narlikar GJ, Cheng Y

EMDB-9354:
Cryo-EM structure of singly-bound SNF2h-nucleosome complex at 3.9A with SNF2h bound at SHL-2
Method: single particle / : Armache JP, Gamarra N, Johnson SL, Wu S, Leonard JD, Narlikar GJ, Cheng Y

EMDB-9355:
Cryo-EM structure of singly-bound SNF2h-nucleosome complex at 6.9A with SNF2h bound at SHL+2
Method: single particle / : Armache JP, Gamarra N, Johnson SL, Wu S, Leonard JD, Narlikar GJ, Cheng Y

EMDB-9356:
Cryo-EM structure of singly-bound SNF2h-nucleosome complex with SNF2h bound at the flanking DNA proximal side
Method: single particle / : Armache JP, Gamarra N, Johnson SL, Leonard JD, Wu S, Narlikar GN

EMDB-0652:
Structural basis of Dot1L stimulation by histone H2B lysine 120 ubiquitination. 3.5A reconstruction of Dot1L on H2BK120Ub nucleosome
Method: single particle / : Valencia-Sanchez MI, De Ioannes P, Wang M, Vasilyev N, Chen R, Nudler E, Armache JP, Armache KJ

EMDB-0653:
Structural basis of Dot1L stimulation by histone H2B lysine 120 ubiquitination. 4.6A reconstruction of Dot1L on H2BK120Ub nucleosome
Method: single particle / : Valencia-Sanchez MI, De Ioannes P, Wang M, Vasilyev N, Chen R, Nudler E, Armache JP, Armache KJ

EMDB-0654:
Structural basis of Dot1L stimulation by histone H2B lysine 120 ubiquitination. 5.2A reconstruction of Dot1L on H2BK120Ub nucleosome
Method: single particle / : Valencia-Sanchez MI, De Ioannes P, Wang M, Vasilyev N, Chen R, Nudler E, Armache JP, Armache KJ

EMDB-0655:
Structural basis of Dot1L stimulation by histone H2B lysine 120 ubiquitination. 4.9A reconstruction of Dot1L on unmodified nucleosome
Method: single particle / : Valencia-Sanchez MI, De Ioannes P, Wang M, Vasilyev N, Chen R, Nudler E, Armache JP, Armache KJ

EMDB-8956:
Structure of AtTPC1(DDE) reconstituted in saposin A with cat06 Fab
Method: single particle / : Green EM, Kintzer AF, Stroud RM, Cheng Y

EMDB-8957:
Structure of AtTPC1(DDE) reconstituted in saposin A
Method: single particle / : Green EM, Kintzer AF, Stroud RM, Cheng Y

EMDB-8958:
Structure of AtTPC1(DDE) in state 1
Method: single particle / : Green EM, Kintzer AF, Stroud RM, Cheng Y

EMDB-8960:
Structure of AtTPC1(DDE) in state 2
Method: single particle / : Green EM, Kintzer AF, Stroud RM, Cheng Y

EMDB-3302:
Structure of the Salipro-POT complex at 6.48 A
Method: single particle / : Frauenfeld J, Loeving R, Armache JP, Sonnen A, Guettou F, Moberg P, Zhu L, Jegerschoeld C, Flayhan A, Briggs J, Garoff H, Loew C, Cheng Y, Nordlund P

EMDB-6267:
Human TRPA1 ion channel with agonist AITC
Method: single particle / : Paulsen CE, Armache JP, Gao Y, Cheng Y, Julius D

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more