[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 39 items for (author: arakawa & a)

EMDB-37850:
Cryo-EM structure of native H. thermoluteolus TH-1 GroEL
Method: single particle / : Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S

EMDB-37853:
Cryo-EM structure of H. thermoluteolus GroEL-GroES2 football complex
Method: single particle / : Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S

EMDB-37862:
Cryo-EM structure of H. thermophilus GroEL-GroES2 asymmetric football complex
Method: single particle / : Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S

EMDB-37863:
Cryo-EM structure of H. thermophilus GroEL-GroES bullet complex
Method: single particle / : Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S

PDB-8wu4:
Cryo-EM structure of native H. thermoluteolus TH-1 GroEL
Method: single particle / : Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S

PDB-8wuc:
Cryo-EM structure of H. thermoluteolus GroEL-GroES2 football complex
Method: single particle / : Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S

PDB-8wuw:
Cryo-EM structure of H. thermophilus GroEL-GroES2 asymmetric football complex
Method: single particle / : Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S

PDB-8wux:
Cryo-EM structure of H. thermophilus GroEL-GroES bullet complex
Method: single particle / : Liao Z, Gopalasingam CC, Kameya M, Gerle C, Shigematsu H, Ishii M, Arakawa T, Fushinobu S

EMDB-30915:
Apo spike protein of SARS-CoV2
Method: single particle / : Liu Y, Soh WT, Kishikawa J, Hirose M, Kato T, Okada M, Arase H

EMDB-30916:
SARS-CoV2 spike protein with Fab fragment of enhancing antibody 8D2
Method: single particle / : Liu Y, Soh WT, Kishikawa J, Hirose M, Kato T, Okada M, Arase H

EMDB-30917:
SARS-CoV2 spike protein with Fab fragment of enhancing antibody (8D2)-1
Method: single particle / : Liu Y, Soh WT, Kishikawa J, Hirose M, Kato T, Okada M, Arase H

EMDB-30918:
SARS-CoV2 spike protein with Fab fragment of enhancing antibody (8D2)-2
Method: single particle / : Liu Y, Soh WT, Kishikawa J, Hirose M, Kato T, Okada M, Arase H

EMDB-30919:
SARS-CoV2 spike protein with Fab fragment of enhancing antibody (8D2)-3
Method: single particle / : Liu Y, Soh WT, Kishikawa J, Hirose M, Kato T, Okada M, Arase H

EMDB-30920:
SARS-CoV2 spike protein with Fab fragment of enhancing antibody (8D2)-4
Method: single particle / : Liu Y, Soh WT, Kishikawa J, Hirose M, Kato T, Okada M, Arase H

EMDB-30921:
SARS-CoV2 spike protein with Fab fragment of enhancing antibody (2940)-1
Method: single particle / : Liu Y, Soh WT, Kishikawa J, Hirose M, Kato T, Okada M, Arase H

EMDB-30922:
SARS-CoV2 spike protein with Fab fragment of enhancing antibody (2940)-2
Method: single particle / : Liu Y, Soh WT, Kishikawa J, Hirose M, Kato T, Okada M, Arase H

PDB-7dzw:
Apo spike protein from SARS-CoV2
Method: single particle / : Liu Y, Soh WT, Li S, Kishikawa J, Hirose M, Kato T, Standley D, Okada M, Arase H

PDB-7dzx:
Spike protein from SARS-CoV2 with Fab fragment of enhancing antibody 8D2
Method: single particle / : Liu Y, Soh WT, Li S, Kishikawa J, Hirose M, Kato T, Standley D, Okada M, Arase H

PDB-7dzy:
Spike protein from SARS-CoV2 with Fab fragment of enhancing antibody 2490
Method: single particle / : Liu Y, Soh WT, Li S, Kishikawa J, Hirose M, Kato T, Standley D, Okada M, Arase H

EMDB-21484:
Cryo-EM structure of Sth1-Arp7-Arp9-Rtt102 bound to the nucleosome in ADP Beryllium Fluoride state
Method: single particle / : Leschziner AE, Baker RW

EMDB-21489:
cryo-EM structure of Sth1-Arp7-Arp9-Rtt102
Method: single particle / : Leschziner AE, Baker RW

EMDB-21493:
cryo-EM map of Sth1-Arp7-Arp9-Rtt102 in the ADP BeF3 state bound to the nucleosome with a peeled DNA conformation
Method: single particle / : Leschziner AE, Baker RW

PDB-6vz4:
Cryo-EM structure of Sth1-Arp7-Arp9-Rtt102 bound to the nucleosome in ADP Beryllium Fluoride state
Method: single particle / : Leschziner AE, Baker RW

PDB-6vzg:
Cryo-EM structure of Sth1-Arp7-Arp9-Rtt102
Method: single particle / : Leschziner AE, Baker RW

EMDB-30362:
2.05 angstrom resolution structure determination of sulfur oxygenase reductase using 200kV cryo-EM
Method: single particle / : Moriya T, Naruhiko A, Sato Y, Arakawa T, Kawasaki M, Yamada C, Fushinobu S, Senda T

EMDB-30073:
Cryo-EM structure of sulfur oxygenase reductase from Sulfurisphaera tokodaii
Method: single particle / : Sato Y, Adachi N

PDB-6m3x:
Cryo-EM structure of sulfur oxygenase reductase from Sulfurisphaera tokodaii
Method: single particle / : Sato Y, Adachi N, Moriya T, Arakawa T, Kawasaki M, Yamada C, Senda T, Fushinobu S

PDB-5fwp:
Atomic cryoEM structure of Hsp90-Cdc37-Cdk4 complex
Method: single particle / : Verba KA, Wang RYR, Arakawa A, Liu Y, Yokoyama S, Agard DA

PDB-5fwk:
Atomic cryoEM structure of Hsp90-Cdc37-Cdk4 complex
Method: single particle / : Verba KA, Wang RYR, Arakawa A, Liu Y, Yokoyama S, Agard DA

PDB-5fwl:
Atomic cryoEM structure of Hsp90-Cdc37-Cdk4 complex
Method: single particle / : Verba KA, Wang RYR, Arakawa A, Liu Y, Yokoyama S, Agard DA

PDB-5fwm:
Atomic cryoEM structure of Hsp90-Cdc37-Cdk4 complex
Method: single particle / : Verba KA, Wang RYR, Arakawa A, Liu Y, Yokoyama S, Agard DA

EMDB-3337:
Atomic cryoEM structure of Hsp90/Cdc37/Cdk4 complex
Method: single particle / : Verba KA, Wang RYR, Arakawa A, Liu Y, Shirouzu M, Yokoyama S, Agard DA

EMDB-3338:
Atomic cryoEM structure of Hsp90/Cdc37/Cdk4 complex
Method: single particle / : Verba KA, Wang RYR, Arakawa A, Liu Y, Shirouzu M, Yokoyama S, Agard DA

EMDB-3339:
Atomic cryoEM structure of Hsp90/Cdc37/Cdk4 complex
Method: single particle / : Verba KA, Wang RYR, Arakawa A, Liu Y, Shirouzu M, Yokoyama S, Agard DA

EMDB-3340:
Atomic cryoEM structure of Hsp90/Cdc37/Cdk4 complex
Method: single particle / : Verba KA, Wang RYR, Arakawa A, Liu Y, Shirouzu M, Yokoyama S, Agard DA

EMDB-3341:
Atomic cryoEM structure of Hsp90/Cdc37/Cdk4 complex
Method: single particle / : Verba KA, Wang RYR, Arakawa A, Liu Y, Shirouzu M, Yokoyama S, Agard DA

EMDB-3342:
Atomic cryoEM structure of Hsp90/Cdc37/Cdk4 complex
Method: single particle / : Verba KA, Wang RYR, Arakawa A, Liu Y, Shirouzu M, Yokoyama S, Agard DA

EMDB-3343:
Atomic cryoEM structure of Hsp90/Cdc37/Cdk4 complex
Method: single particle / : Verba KA, Wang RYR, Arakawa A, Liu Y, Shirouzu M, Yokoyama S, Agard DA

EMDB-3344:
Atomic cryoEM structure of Hsp90/Cdc37/Cdk4 complex
Method: single particle / : Verba KA, Wang RYR, Arakawa A, Liu Y, Shirouzu M, Yokoyama S, Agard DA

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242)：Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more