[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing all 47 items for (author: aiken & c)

EMDB-11899:
HIV-1 Gag immature lattice. GagdeltaMASP1T8I with IP-6
Method: subtomogram averaging / : Mendonca L, Zhang P

EMDB-11894:
HIV-1 Gag immature lattice. GagdeltaMASP1T8I
Method: subtomogram averaging / : Mendonca L, Zhang P

EMDB-11897:
HIV-1 Gag immature lattice. GagSP1T8I
Method: subtomogram averaging / : Mendonca L, Zhang P

PDB-7ash:
HIV-1 Gag immature lattice. GagdeltaMASP1T8I
Method: subtomogram averaging / : Mendonca L, Zhang P

PDB-7asl:
HIV-1 Gag immature lattice. GagSP1T8I
Method: subtomogram averaging / : Mendonca L, Zhang P

EMDB-12287:
HIV-1 Gag T8I NC-RNA layer
Method: subtomogram averaging / : Mendonca L, Zhang P

EMDB-10239:
Structure of the native full-length HIV-1 capsid protein A92E in helical assembly (-12,11)
Method: helical / : Ni T, Gerard S, Zhao G, Ning J, Zhang P

EMDB-10240:
Structure of the native full-length HIV-1 capsid protein A92E in helical assembly (-13,11)
Method: helical / : Ni T, Gerard S, Zhao G, Ning J, Zhang P

EMDB-10246:
Structure of the native full-length HIV-1 capsid protein in helical assembly (-13,12)
Method: helical / : Ni T, Gerard S, Zhao G, Ning J, Zhang P

PDB-6slq:
Structure of the native full-length HIV-1 capsid protein A92E in helical assembly (-12,11)
Method: helical / : Ni T, Gerard S, Zhao G, Ning J, Zhang P

PDB-6slu:
Structure of the native full-length HIV-1 capsid protein A92E in helical assembly (-13,11)
Method: helical / : Ni T, Gerard S, Zhao G, Ning J, Zhang P

PDB-6smu:
Structure of the native full-length HIV-1 capsid protein in helical assembly (-13,12)
Method: helical / : Ni T, Gerard S, Zhao G, Ning J, Zhang P

EMDB-10226:
Structure of the native full-length HIV-1 capsid protein in helical assembly (-13,8)
Method: helical / : Ni T, Gerard S, Zhao G, Ning J, Zhang P

EMDB-10228:
Structure of the native full-length HIV-1 capsid protein A92E in helical assembly (-13,12)
Method: helical / : Ni T, Gerard S, Zhao G, Ning J, Zhang P

EMDB-10229:
Structure of the native full-length HIV-1 capsid protein in helical assembly (-13,8)
Method: helical / : Ni T, Gerard S, Zhao G, Ning J, Zhang P

PDB-6skk:
Structure of the native full-length HIV-1 capsid protein in helical assembly (-13,8)
Method: helical / : Ni T, Gerard S, Zhao G, Ning J, Zhang P

PDB-6skm:
Structure of the native full-length HIV-1 capsid protein A92E in helical assembly (-13,12)
Method: helical / : Ni T, Gerard S, Zhao G, Ning J, Zhang P

PDB-6skn:
Structure of the native full-length HIV-1 capsid protein in helical assembly (-13,8)
Method: helical / : Ni T, Gerard S, Zhao G, Ning J, Zhang P

EMDB-10738:
Structure of the native full-length HIV-1 capsid protein in complex with Cyclophilin A from helical assembly (-8,13)
Method: single particle / : Ni T, Gerard S, Zhao G, Ning J, Zhang P

EMDB-10739:
Structure of the native full-length HIV-1 capsid protein in complex with Cyclophilin A from helical assembly (-13,8)
Method: single particle / : Ni T, Gerard S, Zhao G, Ning J, Zhang P

EMDB-10740:
Structure of the native full-length HIV-1 capsid protein in complex with Cyclophilin A from helical assembly (-13,7)
Method: single particle / : Ni T, Gerard S, Zhao G, Ning J, Zhang P

EMDB-10741:
Structure of the native full-length HIV-1 capsid protein in complex with Cyclophilin A from helical assembly (-7,13)
Method: single particle / : Ni T, Gerard S, Zhao G, Ning J, Zhang P

EMDB-10742:
Structure of the native full-length HIV-1 capsid protein in complex with Cyclophilin A from helical assembly (-13,9)
Method: single particle / : Ni T, Gerard S, Zhao G, Ning J, Zhang P

EMDB-11176:
Structure of the native full-length HIV-1 capsid protein in complex with Cyclophilin A from helical assembly (-13,10)
Method: single particle / : Ni T, Gerard S, Zhao G, Ning J, Zhang P

PDB-6y9v:
Structure of the native full-length HIV-1 capsid protein in complex with Cyclophilin A from helical assembly (-8,13)
Method: single particle / : Ni T, Gerard S, Zhao G, Ning J, Zhang P

PDB-6y9w:
Structure of the native full-length HIV-1 capsid protein in complex with Cyclophilin A from helical assembly (-13,8)
Method: single particle / : Ni T, Gerard S, Zhao G, Ning J, Zhang P

PDB-6y9x:
Structure of the native full-length HIV-1 capsid protein in complex with Cyclophilin A from helical assembly (-13,7)
Method: single particle / : Ni T, Gerard S, Zhao G, Ning J, Zhang P

PDB-6y9y:
Structure of the native full-length HIV-1 capsid protein in complex with Cyclophilin A from helical assembly (-7,13)
Method: single particle / : Ni T, Gerard S, Zhao G, Ning J, Zhang P

PDB-6y9z:
Structure of the native full-length HIV-1 capsid protein in complex with Cyclophilin A from helical assembly (-13,9)
Method: single particle / : Ni T, Gerard S, Zhao G, Ning J, Zhang P

PDB-6zdj:
Structure of the native full-length HIV-1 capsid protein in complex with Cyclophilin A from helical assembly (-13,10)
Method: single particle / : Ni T, Gerard S, Zhao G, Ning J, Zhang P

EMDB-10816:
Focused refinement cryo-EM structure of the yeast mitochondrial complex I sub-stoichiometric sulfur transferase subunit
Method: single particle / : Hirst J, Grba D

PDB-6yj5:
Focused refinement cryo-EM structure of the yeast mitochondrial complex I sub-stoichiometric sulfur transferase subunit
Method: single particle / : Hirst J, Grba D

EMDB-8582:
Structure of the HIV-1 Capsid Protein and spacer peptide 1 by Cryo-EM
Method: helical / : Zhang P, Randall S

PDB-5up4:
Structure of the HIV-1 Capsid Protein and spacer peptide 1 by Cryo-EM
Method: helical / : Perilla JR, Schirra R, Zhang P, Schulten K

EMDB-8403:
sub-tomogram average of in vitro assembled HIV-1 Gag VLPs
Method: subtomogram averaging / : Himes BA, Zhang P

EMDB-8404:
Single particle helical reconstruction of protease cleavage product from HIV-1 Gag VLPs
Method: helical / : Fu X, Zhang P

EMDB-3075:
Cyclophilin A Stabilizes HIV-1 Capsid through a Novel Non-canonical Binding Site
Method: helical / : Liu C, Perilla JR, Ning J, Lu M, Hou G, Ramalhu R, Bedwell GJ, Ahn J, Shi J, Gronenborn AM, Prevelige Jr PE, Rousso I, Aiken C, Polenova T, Schulten K, Zhang P

EMDB-3076:
Cyclophilin A Stabilize HIV-1 Capsid through a Novel Non-canonical Binding Site
Method: helical / : Liu C, Perilla JR, Ning J, Lu M, Hou G, Ramalhu R, Bedwell GJ, Ahn J, Shi J, Gronenborn AM, Prevelige Jr PE, Rousso I, Aiken C, Polenova T, Schulten K, Zhang P

PDB-5fjb:
Cyclophilin A Stabilize HIV-1 Capsid through a Novel Non- canonical Binding Site
Method: helical / : Liu C, Perilla JR, Ning J, Lu M, Hou G, Ramalhu R, Bedwell GJ, Ahn J, Shi J, Gronenborn AM, Prevelige Jr PE, Rousso I, Aiken C, Polenova T, Schulten K, Zhang P

PDB-3j4f:
Structure of HIV-1 capsid protein by cryo-EM
Method: helical / : Zhao G, Perilla JR, Meng X, Schulten K, Zhang P

EMDB-5582:
Cryo-EM structure of HIV-1 capsid assembly
Method: helical / : Zhao G, Perilla JR, Yufenyuy E, Meng X, Chen B, Ning J, Ahn J, Gronenborn AM, Schulten K, Aiken C, Zhang P

EMDB-5639:
Cryo-electron tomography reconstruction of native HIV-1 core
Method: electron tomography / : Zhao G, Perilla JR, Yufenyuy E, Meng X, Chen B, Ning J, Ahn J, Gronenborn AM, Schulten K, Aiken C, Zhang P

PDB-3j34:
Structure of HIV-1 Capsid Protein by Cryo-EM
Method: helical / : Zhao G, Perilla JR, Yufenyuy E, Meng X, Chen B, Ning J, Ahn J, Gronenborn AM, Schulten K, Aiken C, Zhang P

PDB-3j3q:
Atomic-level structure of the entire HIV-1 capsid
Method: electron tomography / : Perilla JR, Zhao G, Zhang P, Schulten KJ

PDB-3j3y:
Atomic-level structure of the entire HIV-1 capsid (186 hexamers + 12 pentamers)
Method: electron tomography / : Perilla JR, Zhao G, Zhang P, Schulten KJ

EMDB-5523:
Protease Cleavage Leads to Formation of Mature Trimer Interface in HIV-1 Capsid
Method: helical / : Meng X, Zhao G, Yufenyuy E, Ke D, Ning J, DeLucia M, Ahn J, Gronenborn AM, Aiken C, Zhang P

EMDB-5136:
CryoEM Structure of Tubular Assembly of HIV-1 CA and Evidence for a Novel Interface
Method: helical / : Byeon IL, Meng X, Jung J, Zhao G, Ahn J, Concel J, Aiken C, Gronenborn AM, Zhang P

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more