[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 118 items for (author: aibara & s)

EMDB-13981:
Human mitochondrial ribosome in complex with mRNA, A/A-, P/P- and E/E-tRNAs at 2.63 A resolution
Method: single particle / : Singh V, Itoh Y, Andrell J, Aibara S, Amunts A

PDB-7qi5:
Human mitochondrial ribosome in complex with mRNA, A/A-, P/P- and E/E-tRNAs at 2.63 A resolution
Method: single particle / : Singh V, Itoh Y, Amunts A

EMDB-13982:
Human mitochondrial ribosome in complex with mRNA, A/P- and P/E-tRNAs at 2.98 A resolution
Method: single particle / : Singh V, Itoh Y, Amunts A, Aibara S

PDB-7qi6:
Human mitochondrial ribosome in complex with mRNA, A/P- and P/E-tRNAs at 2.98 A resolution
Method: single particle / : Singh V, Itoh Y, Amunts A

EMDB-13980:
Human mitochondrial ribosome at 2.2 A resolution
Method: single particle / : Singh V, Itoh Y, Andrell J, Aibara S, Amunts A

PDB-7qi4:
Human mitochondrial ribosome at 2.2 A resolution (bound to partly built tRNAs and mRNA)
Method: single particle / : Singh V, Itoh Y, Amunts A

EMDB-13129:
RNA Polymerase II dimer (Class 1)
Method: single particle / : Aibara S, Dienemann C, Cramer P

EMDB-13130:
RNA Polymerase II dimer (Class 2)
Method: single particle / : Aibara S, Dienemann C, Cramer P

EMDB-13131:
RNA Polymerase II dimer (Class 3)
Method: single particle / : Aibara S, Dienemann C, Cramer P

EMDB-13132:
RNA polymerase II monomer without nucleic acid
Method: single particle / : Aibara S, Dienemann C, Cramer P

PDB-7ozn:
RNA Polymerase II dimer (Class 1)
Method: single particle / : Aibara S, Dienemann C, Cramer P

PDB-7ozo:
RNA Polymerase II dimer (Class 2)
Method: single particle / : Aibara S, Dienemann C, Cramer P

PDB-7ozp:
RNA Polymerase II dimer (Class 3)
Method: single particle / : Aibara S, Dienemann C, Cramer P

EMDB-12877:
Human mitochondrial ribosome in complex with P/E-tRNA
Method: single particle / : Aibara S, Singh V, Modelska A, Amunts A

PDB-7og4:
Human mitochondrial ribosome in complex with P/E-tRNA
Method: single particle / : Aibara S, Singh V, Modelska A, Amunts A

EMDB-12719:
Yeast RNA polymerase II transcription pre-initiation complex with initial transcription bubble
Method: single particle / : Schilbach S, Aibara S, Dienemann C, Grabbe F, Cramer P

EMDB-12720:
Yeast RNA polymerase II transcription pre-initiation complex (consensus)
Method: single particle / : Schilbach S, Aibara S, Dienemann C, Grabbe F, Cramer P

EMDB-12721:
Yeast TFIIH in the contracted state within the pre-initiation complex
Method: single particle / : Schilbach S, Aibara S, Dienemann C, Grabbe F, Cramer P

EMDB-12722:
Yeast TFIIH in the expanded state within the pre-initiation complex
Method: single particle / : Schilbach S, Aibara S, Dienemann C, Grabbe F, Cramer P

EMDB-12723:
Focused refinement of the upstream complex region of a RNA polymerase II transcription pre-initiation assembly
Method: single particle / : Schilbach S, Aibara S, Dienemann C, Grabbe F, Cramer P

EMDB-12724:
Focused refinement of RNA polymerase II (10-subunit) - TFIIB - TFIIF region of a transcription pre-initiation assembly
Method: single particle / : Schilbach S, Aibara S, Dienemann C, Grabbe F, Cramer P

EMDB-12725:
Focused refinement of RNA polymerase II (10-subunit) - TFIIB region of a transcription pre-initiation assembly
Method: single particle / : Schilbach S, Aibara S, Dienemann C, Grabbe F, Cramer P

EMDB-12743:
Yeast RNA polymerase II transcription pre-initiation complex with closed promoter DNA
Method: single particle / : Schilbach S, Aibara S, Dienemann C, Grabbe F, Cramer P

EMDB-12744:
Yeast RNA polymerase II transcription pre-initiation complex with closed distorted promoter DNA
Method: single particle / : Schilbach S, Aibara S, Dienemann C, Grabbe F, Cramer P

EMDB-12745:
Yeast RNA polymerase II transcription pre-initiation complex with open promoter DNA
Method: single particle / : Schilbach S, Aibara S, Dienemann C, Grabbe F, Cramer P

PDB-7o4i:
Yeast RNA polymerase II transcription pre-initiation complex with initial transcription bubble
Method: single particle / : Schilbach S, Aibara S, Dienemann C, Grabbe F, Cramer P

PDB-7o4j:
Yeast RNA polymerase II transcription pre-initiation complex (consensus)
Method: single particle / : Schilbach S, Aibara S, Dienemann C, Grabbe F, Cramer P

PDB-7o4k:
Yeast TFIIH in the contracted state within the pre-initiation complex
Method: single particle / : Schilbach S, Aibara S, Dienemann C, Grabbe F, Cramer P

PDB-7o4l:
Yeast TFIIH in the expanded state within the pre-initiation complex
Method: single particle / : Schilbach S, Aibara S, Dienemann C, Grabbe F, Cramer P

PDB-7o72:
Yeast RNA polymerase II transcription pre-initiation complex with closed promoter DNA
Method: single particle / : Schilbach S, Aibara S, Dienemann C, Grabbe F, Cramer P

PDB-7o73:
Yeast RNA polymerase II transcription pre-initiation complex with closed distorted promoter DNA
Method: single particle / : Schilbach S, Aibara S, Dienemann C, Grabbe F, Cramer P

PDB-7o75:
Yeast RNA polymerase II transcription pre-initiation complex with open promoter DNA
Method: single particle / : Schilbach S, Aibara S, Dienemann C, Grabbe F, Cramer P

EMDB-12087:
Cryo-EM structure of mammalian RNA polymerase II in complex with human RPAP2
Method: single particle / : Fianu I, Dienemann C, Aibara S, Schilbach S, Cramer P

PDB-7b7u:
Cryo-EM structure of mammalian RNA polymerase II in complex with human RPAP2
Method: single particle / : Fianu I, Dienemann C, Aibara S, Schilbach S, Cramer P

EMDB-12609:
Human Mediator with RNA Polymerase II Stalk
Method: single particle / : Rengachari S, Schilbach S, Aibara S, Cramer P

EMDB-12610:
Human Mediator with RNA Polymerase II Pre-initiation complex
Method: single particle / : Rengachari S, Schilbach S, Aibara S, Cramer P

EMDB-12611:
RNA polymerase II core pre-initiation complex with closed promoter DNA in proximal position
Method: single particle / : Aibara S, Schilbach S, Cramer P

EMDB-12612:
RNA polymerase II core pre-initiation complex with closed promoter DNA in distal position
Method: single particle / : Aibara S, Schilbach S, Cramer P

EMDB-12613:
RNA polymerase II core pre-initiation complex with open promoter DNA
Method: single particle / : Aibara S, Schilbach S, Cramer P

EMDB-12614:
XPB-containing part of TFIIH in a post-translocated state (with ADP-BeF3)
Method: single particle / : Aibara S, Schilbach S, Cramer P

EMDB-12615:
TFIIH in a pre-translocated state (without ADP-BeF3)
Method: single particle / : Aibara S, Schilbach S, Cramer P

EMDB-12616:
TFIIH in a post-translocated state (with ADP-BeF3)
Method: single particle / : Aibara S, Schilbach S, Cramer P

EMDB-12617:
RNA polymerase II pre-initiation complex with closed promoter DNA in proximal position
Method: single particle / : Aibara S, Schilbach S, Cramer P

EMDB-12618:
RNA polymerase II pre-initiation complex with closed promoter DNA in distal position
Method: single particle / : Aibara S, Schilbach S, Cramer P

EMDB-12619:
RNA polymerase II pre-initiation complex with open promoter DNA
Method: single particle / : Aibara S, Schilbach S, Cramer P

EMDB-12620:
Focused refinement of the core RNA polymerase II pre-initiation complex in a consensus CC state (without ADP-BeF3)
Method: single particle / : Aibara S, Schilbach S, Cramer P

EMDB-12621:
Focused refinement of the core RNA polymerase II pre-initiation complex in a consensus OC state (with ADP-BeF3)
Method: single particle / : Aibara S, Schilbach S, Cramer P

EMDB-12622:
Focused refinement of the upstream complex for the RNA polymerase II pre-initiation complex in a consensus CC state (without ADP-BeF3)
Method: single particle / : Aibara S, Schilbach S, Cramer P

EMDB-12623:
Focused refinement of the upstream complex for the RNA polymerase II pre-initiation complex in a consensus OC state (with ADP-BeF3)
Method: single particle / : Aibara S, Schilbach S, Cramer P

EMDB-12624:
Focused refinement of XPB containing part of TFIIH in pre-translocated state (without ADP-BeF3)
Method: single particle / : Aibara S, Schilbach S, Cramer P

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more