3D Electron Microscopy (3D-EM) Data Navigator [English /
EM Navigator is...
External links / softwares
Omokage (Overall morphology comparing system for EM data)
Omokage is structure comparison system using vector quantization.
It calculates similarities of the overall shapes, rather than detailed structures.
It is not accurate comparison.
The documentatin is under construction.
It is beta (under testing).
List of similar structures
The lists are sorted by Omokage scores.
Diagram page (Omokage map)
The diagram is indicating the relationships of the structure similarities.
It is generated by multidimensional scaling of Omokage scores.
The green boxes indicates EMDB data, and the blue boxes are PDB data. The image and title are appeared when a boxe is clicked.
The diagram can be moved by mouse dragging, and zoomed in/out by the "zoom" slider.
When you input a EMDB/PDB ID code in the "ID" box, the corresponding data will be focused.
When you input words in the "Keywords" box, the data related to the keywords are colored.