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Mm-cpn rls with ATP and AlFx

by single particle reconstruction, at 6.9 A resolution

Movie

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#1: Depositted structure unit, Made by Jmol

#2: Superimposing with EM 3D map: EMDB-5246, Made by UCSF CHIMERA

Entry
Summary
Database / IDPORTEIN DATA BANK (PDB) / 3izj
TitleMm-cpn rls with ATP and AlFx
DescriptorChaperonin
KeywordsCHAPERONE, Mm-cpn, maripaludis, chaperonin
PDBj Mine pagesSummary, Structural Details, Experimental Details, Functional Details
Other databasesRCSB-PDB, PDBe, CATH, CE, FSSP, SCOP, VAST
Structure Visualization
MoviesMovie Page

#1: Depositted structure unit, Made by Jmol

#2: Superimposing with EM 3D map: EMDB-5246, Made by UCSF CHIMERA

Structure viewersYorodumi, jV4, Jmol, Biological unit (Images, jV)
Related Structure Data
Related Entries

Fit: target map of fitting

Similar strucutres (beta)
List of similar structure data about Omokage system
Article
Citation - primary
ArticleCell(Cambridge,Mass.), Vol. 144, Page: 240 - 252, Year: 2011,
TitleDual Action of ATP Hydrolysis Couples Lid Closure to Substrate Release into the Group II Chaperonin Chamber.
AuthorsDouglas, N.R., Reissmann, S., Zhang, J., Chen, B., Jakana, J., Kumar, R., Chiu, W., Frydman, J.
LinksDOI: 10.1016/j.cell.2010.12.017
Components
ID 1 : Chaperonin GroEL (Thermosome, HSP60 family)
Image
DescriptionChaperonin
Typepolypeptide(L)
Formula weight55119.980 Da
Number of molecules16
ID1
SourceMethod: Isolated from a genetically manipulated source
Gene: hsp60, MMP1515, ID:39152, Methanococcus maripaludis
Host: ID:562, Escherichia coli

LinksUniProt: Q877G8, Sequence view
Sample
Assembly
Aggregation statePARTICLE
Composition16-mer
Experimental Mass0.9
Theoretical Mass0.9
NameMm-cpn rls with ATP and AlFx
Num components2
Entity assembly
Assembly-ID1
NameMethanococcus maripaludis chaperonin
TypePROTEIN
Experiment
Reconstruction methodSINGLE PARTICLE
Specimen typeVITREOUS ICE (CRYO EM)
Vitrification
Cryogen nameETHANE
Humidity100
Instrumentvitribot
Experiment
MethodELECTRON MICROSCOPY
Electron Microscopy
Imaging
MicroscopeModel: JEM3200FSC
Electron gun
Electron sourceFIELD EMISSION GUN
Accelerating voltage200 kV
Illumination modeFLOOD BEAM
Lens
ModeBRIGHT FIELD
Detector distance0.0
Specimen holder
Specimen holderModel: GATAN LIQUID NITROGEN, Type: Gatan side entry
Tilt angleMin: 0.0 degrees, Max: 0.0 degrees
Detector
TypeGatan 4Kx4K CCD camera
Processing
2D projection selection
Software nameRosetta
Single particle entity
Symmetry typeDIHEDRAL
3D reconstruction
Resolution6.9 A
Resolution methodFSC at 0.5 cut-off
SoftwareEMAN
3D fitting
Refinement SpaceREAL
Software nameRosetta
Refine hist
Cycle idLAST
Refine idELECTRON MICROSCOPY
Total atoms61440
Protein atoms61440
Download
PDB format
Allpdb3izj.ent.gz
pdb3izj.ent (uncompressed file)
Header onlypdb3izj.ent.gz
mmCIF format
mmCIF3izj.cif.gz
XML format
All3izj.xml.gz
No-atom3izj-noatom.xml.gz
Ext-atom3izj-extatom.xml.gz
Movie files
movie #1
.mp4 (H.264/MPEG-4 AVC format), 3.5 MB
.webm (WebM/VP8 format), 4.7 MB
movie #2
.mp4 (H.264/MPEG-4 AVC format), 3.8 MB
.webm (WebM/VP8 format), 5.8 MB