Mm-cpn rls with ATP and AlFx
by single particle reconstruction, at 6.9 A resolution

#1: Depositted structure unit, Made by Jmol
#2: Superimposing with EM 3D map: EMDB-5246, Made by UCSF CHIMERA
Entry | |
| Summary | |
| Database / ID | PORTEIN DATA BANK (PDB) / 3izj |
|---|---|
| Title | Mm-cpn rls with ATP and AlFx |
| Descriptor | Chaperonin |
| Keywords | CHAPERONE, Mm-cpn, maripaludis, chaperonin |
| PDBj Mine pages | Summary, Structural Details, Experimental Details, Functional Details |
| Other databases | RCSB-PDB, PDBe, CATH, CE, FSSP, SCOP, VAST |
| Structure Visualization | |
| Movies | Movie Page#1: Depositted structure unit, Made by Jmol #2: Superimposing with EM 3D map: EMDB-5246, Made by UCSF CHIMERA |
| Structure viewers | Yorodumi, jV4, Jmol, Biological unit (Images, jV) |
| Related Structure Data | |
| Related Entries |
Fit: target map of fitting |
| Similar strucutres (beta) |
List of similar structure data about Omokage system |
Article | |
| Citation - primary | |
| Article | Cell(Cambridge,Mass.), Vol. 144, Page: 240 - 252, Year: 2011, |
|---|---|
| Title | Dual Action of ATP Hydrolysis Couples Lid Closure to Substrate Release into the Group II Chaperonin Chamber. |
| Authors | Douglas, N.R., Reissmann, S., Zhang, J., Chen, B., Jakana, J., Kumar, R., Chiu, W., Frydman, J. |
| Links | DOI: 10.1016/j.cell.2010.12.017 |
Components | |
| ID 1 : Chaperonin GroEL (Thermosome, HSP60 family) | |
| Image | ![]() ![]() |
|---|---|
| Description | Chaperonin |
| Type | polypeptide(L) |
| Formula weight | 55119.980 Da |
| Number of molecules | 16 |
| ID | 1 |
| Source | Method: Isolated from a genetically manipulated source Gene: hsp60, MMP1515, ID:39152, Methanococcus maripaludisHost: ID:562, Escherichia coli |
| Links | UniProt: Q877G8, Sequence view |
Sample | |
| Assembly | |
| Aggregation state | PARTICLE |
|---|---|
| Composition | 16-mer |
| Experimental Mass | 0.9 |
| Theoretical Mass | 0.9 |
| Name | Mm-cpn rls with ATP and AlFx |
| Num components | 2 |
| Entity assembly | |
| Assembly-ID | 1 |
| Name | Methanococcus maripaludis chaperonin |
| Type | PROTEIN |
| Experiment | |
| Reconstruction method | SINGLE PARTICLE |
| Specimen type | VITREOUS ICE (CRYO EM) |
| Vitrification | |
| Cryogen name | ETHANE |
| Humidity | 100 |
| Instrument | vitribot |
| Experiment | |
| Method | ELECTRON MICROSCOPY |
Electron Microscopy | |
| Imaging | |
| Microscope | Model: JEM3200FSC |
|---|---|
| Electron gun | |
| Electron source | FIELD EMISSION GUN |
| Accelerating voltage | 200 kV |
| Illumination mode | FLOOD BEAM |
| Lens | |
| Mode | BRIGHT FIELD |
| Detector distance | 0.0 |
| Specimen holder | |
| Specimen holder | Model: GATAN LIQUID NITROGEN, Type: Gatan side entry |
| Tilt angle | Min: 0.0 degrees, Max: 0.0 degrees |
| Detector | |
| Type | Gatan 4Kx4K CCD camera |
Processing | |
| 2D projection selection | |
| Software name | Rosetta |
|---|---|
| Single particle entity | |
| Symmetry type | DIHEDRAL |
| 3D reconstruction | |
| Resolution | 6.9 A |
| Resolution method | FSC at 0.5 cut-off |
| Software | EMAN |
| 3D fitting | |
| Refinement Space | REAL |
| Software name | Rosetta |
| Refine hist | |
| Cycle id | LAST |
| Refine id | ELECTRON MICROSCOPY |
| Total atoms | 61440 |
| Protein atoms | 61440 |
Download | |||
| PDB format | |||
| All | pdb3izj.ent.gz pdb3izj.ent (uncompressed file) | ||
|---|---|---|---|
| Header only | pdb3izj.ent.gz | ||
| mmCIF format | |||
| mmCIF | 3izj.cif.gz | ||
| XML format | |||
| All | 3izj.xml.gz | ||
| No-atom | 3izj-noatom.xml.gz | ||
| Ext-atom | 3izj-extatom.xml.gz | ||
| Movie files | |||
| movie #1 |
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| movie #2 |
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