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Yorodumi- PDB-1ctf: STRUCTURE OF THE C-TERMINAL DOMAIN OF THE RIBOSOMAL PROTEIN L7/L1... -
+Open data
-Basic information
Entry | Database: PDB / ID: 1ctf | ||||||
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Title | STRUCTURE OF THE C-TERMINAL DOMAIN OF THE RIBOSOMAL PROTEIN L7/L12 FROM ESCHERICHIA COLI AT 1.7 ANGSTROMS | ||||||
Components | RIBOSOMAL PROTEIN L7/L12Ribosome | ||||||
Keywords | RIBOSOMAL PROTEIN | ||||||
Function / homology | Function and homology information ribosome binding / large ribosomal subunit / cytoplasmic translation / cytosolic large ribosomal subunit / structural constituent of ribosome / translation / mRNA binding / protein homodimerization activity / cytosol / cytoplasm Similarity search - Function | ||||||
Biological species | Escherichia coli (E. coli) | ||||||
Method | X-RAY DIFFRACTION / Resolution: 1.7 Å | ||||||
Authors | Leijonmarck, M. / Liljas, A. | ||||||
Citation | Journal: J Mol Biol / Year: 1987 Title: Structure of the C-terminal domain of the ribosomal protein L7/L12 from Escherichia coli at 1.7 A. Authors: M Leijonmarck / A Liljas / Abstract: The structure of a C-terminal fragment of the ribosomal protein L7/L12 from Escherichia coli has been refined using crystallographic data to 1.7 A resolution. The R-value is 17.4%. Six residues at ...The structure of a C-terminal fragment of the ribosomal protein L7/L12 from Escherichia coli has been refined using crystallographic data to 1.7 A resolution. The R-value is 17.4%. Six residues at the N terminus are too disordered in the structure to be localized. These residues are probably part of a hinge in the complete L7/L12 molecule. The possibility that a 2-fold crystallographic axis is a molecular 2-fold axis is discussed. A patch of invariant residues on the surface of the dimer is probably involved in functional interactions with elongation factors. #1: Journal: Structural Aspects of Recognition and Assembly in Biological Macromolecules Year: 1981 Title: Structural Studies on the Protein L7(Slash)L12 from E. Coli Ribosomes Authors: Leijonmarck, M. / Pettersson, I. / Liljas, A. #2: Journal: Nature / Year: 1980 Title: Crystal Structure of a Ribosomal Component at 2.6 Angstroms Resolution Authors: Leijonmarck, M. / Eriksson, S. / Liljas, A. #3: Journal: FEBS Lett. / Year: 1978 Title: Isolation and Crystallization of Stable Domains of the Protein L7(Slash)L12 from Escherichia Coli Ribosomes Authors: Liljas, A. / Eriksson, S. / Donner, D. / Kurland, C.G. | ||||||
History |
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-Structure visualization
Structure viewer | Molecule: MolmilJmol/JSmol |
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-Downloads & links
-Download
PDBx/mmCIF format | 1ctf.cif.gz | 24.6 KB | Display | PDBx/mmCIF format |
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PDB format | pdb1ctf.ent.gz | 16 KB | Display | PDB format |
PDBx/mmJSON format | 1ctf.json.gz | Tree view | PDBx/mmJSON format | |
Others | Other downloads |
-Validation report
Arichive directory | https://data.pdbj.org/pub/pdb/validation_reports/ct/1ctf ftp://data.pdbj.org/pub/pdb/validation_reports/ct/1ctf | HTTPS FTP |
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-Related structure data
Similar structure data |
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-Links
-Assembly
Deposited unit |
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1 |
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Unit cell |
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Atom site foot note | 1: THE ELECTRON DENSITY FOR RESIDUE LYS 59 IS POORLY DEFINED FROM CD TO NZ. 2: THE ELECTRON DENSITY FOR RESIDUES LYS 81, LYS 108, LYS 120 IS POORLY DEFINED FROM CG TO NZ. 3: RESIDUE PRO 91 IS A CIS PROLINE. | |||||||||
Components on special symmetry positions |
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-Components
#1: Protein | Mass: 7573.641 Da / Num. of mol.: 1 Source method: isolated from a genetically manipulated source Source: (gene. exp.) Escherichia coli (E. coli) / References: UniProt: P0A7K2 |
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#2: Chemical | ChemComp-SO4 / |
#3: Water | ChemComp-HOH / |
-Experimental details
-Experiment
Experiment | Method: X-RAY DIFFRACTION |
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-Sample preparation
Crystal | Density Matthews: 2.12 Å3/Da / Density % sol: 41.9 % |
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Crystal grow | *PLUS Method: other / Details: Leijonmarck, M., (1980) Nature, 286, 824. |
-Data collection
Radiation | Scattering type: x-ray |
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Radiation wavelength | Relative weight: 1 |
Reflection | *PLUS Highest resolution: 1.69 Å / Num. all: 8688 / Num. obs: 7863 / Rmerge(I) obs: 0.018 |
-Processing
Software | Name: CORELS / Classification: refinement | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Refinement | Highest resolution: 1.7 Å /
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Refinement step | Cycle: LAST / Highest resolution: 1.7 Å
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Refine LS restraints |
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Refinement | *PLUS Lowest resolution: 6.02 Å / Rfactor all: 0.196 / Rfactor obs: 0.174 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Solvent computation | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Displacement parameters | *PLUS | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Refine LS restraints | *PLUS
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