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Localization of the large subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

by single particle reconstruction, at 8.8 A resolution

Movie

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Entry
Summary
Database / IDPORTEIN DATA BANK (PDB) / 3izs
TitleLocalization of the large subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
Descriptor60S ribosomal protein rpL1 (L1p)
60S ribosomal protein rpL2 (L2p)
60S ribosomal protein rpL3 (L3p)
60S ribosomal protein rpL11 (L5p)
60S ribosomal protein rpL6 (L6e)
60S ribosomal protein rpL9 (L6p)
60S ribosomal protein rpL8 (L7ae)
60S ribosomal protein rpL10 (L10e)
60S acidic ribosomal protein rpP0 (L10P)
60S ribosomal protein rpL12 (L11p)
60S ribosomal protein rpL16 (L13p)
60S ribosomal protein rpL14 (L14e)
60S ribosomal protein rpL23 (L14p)
60S ribosomal protein rpL15 (L15e)
60S ribosomal protein rpL28 (L15p)
60S ribosomal protein rpL18 (L18e)
60S ribosomal protein rpL19 (L19e)
60S ribosomal protein rpL21 (L21e)
60S ribosomal protein rpL22 (L22e)
60S ribosomal protein rpL17 (L22p)
60S ribosomal protein rpL25 (L23p)
60S ribosomal protein rpL24 (L24e)
60S ribosomal protein rpL26 (L24p)
60S ribosomal protein rpL27 (L27e)
60S ribosomal protein rpL29 (L29e)
60S ribosomal protein rpL35 (L29p)
60S ribosomal protein rpL30 (L30e)
60S ribosomal protein rpL7 (L30p)
60S ribosomal protein rpL31 (L31e)
60S ribosomal protein pL32 (L32e)
60S ribosomal protein rpL34 (L34e)
60S ribosomal protein rpL33 (L35ae)
60S ribosomal protein rpL36 (L36e)
60S ribosomal protein rpL43 (L37ae)
60S ribosomal protein rpL37 (L37e)
60S ribosomal protein rpL38 (L38e)
60S ribosomal protein rpL39 (L39e)
60S ribosomal protein rpL40 (L40e)
60S ribosomal protein rpL41 (L41e)
60S ribosomal protein rpL42 (L44e)
60S acidic ribosomal protein rpP11 (P1)
60S acidic ribosomal protein (P2)
60S ribosomal protein rpL5 (L18p)
60S ribosomal protein rpL4 (L4p)
60S ribosomal protein rpL13 (L13e)
60S ribosomal protein rpL20 (L18ae)

KeywordsRIBOSOME, eukaryotic ribosome, homology modeling, de novo modeling, ribosomal proteins, novel ribosomal proteins
AuthorsArmache, J.-P., Jarasch, A., Anger, A.M., Villa, E., Becker, T., Bhushan, S., Jossinet, F., Habeck, M., Dindar, G., Franckenberg, S., Marquez, V., Mielke, T., Thomm, M., Berninghausen, O., Beatrix, B., Soeding, J., Westhof, E., Wilson, D.N., Beckmann, R.
DateDeposition: 2010-12-06, Release: 2010-12-15
PDBj Mine pagesSummary, Structural Details, Experimental Details, Functional Details
Other databasesRCSB-PDB, PDBe, CATH, CE, FSSP, SCOP, VAST
Structure Visualization
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#1: Depositted structure unit, Made by Jmol

#2: Superimposing with simplified surface model of EM map, EMDB-1669, Made by Jmol

#3: Superimposing with simplified surface model of EM map, EMDB-1811, Made by Jmol

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#5: With PDB-3izb, PDB-3izd, PDB-3ize, PDB-3izf, Made by Jmol

#6: Superimposing with EM 3D map: EMDB-1811 (with PDB-3izb, PDB-3izd, PDB-3ize, PDB-3izf), Made by UCSF CHIMERA

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Article
Citation - primary
ArticleProc. Natl. Acad. Sci. U.S.A., Vol. 107, Issue 46, Page 19748-53, Year 2010
TitleCryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution.
AuthorsJean-Paul Armache, Alexander Jarasch, Andreas M Anger, Elizabeth Villa, Thomas Becker, Shashi Bhushan, Fabrice Jossinet, Michael Habeck, Gülcin Dindar, Sibylle Franckenberg, Viter Marquez, Thorsten Mielke, Michael Thomm, Otto Berninghausen, Birgitta Beatrix, Johannes Söding, Eric Westhof, Daniel N Wilson, Roland Beckmann
Gene Center, Department of Biochemistry, Ludwig-Maximilians-Universität München, Feodor-Lynen-Strasse 25, 81377 Munich, Germany.
KeywordsCryoelectron Microscopy, Crystallography, X-Ray, Escherichia coli (metabolism), Eukaryotic Cells (metabolism), Humans, Models, Molecular, Protein Biosynthesis, RNA, Ribosomal (ultrastructure), Ribosomes (chemistry), Saccharomyces cerevisiae (metabolism), Triticum (metabolism)
LinksDOI: 10.1073/pnas.1009999107, PubMed: 20980660, PMC: PMC2993355
Citation - 1
ArticleProc. Natl. Acad. Sci. U.S.A., Vol. 107, Issue 46, Page 19754-9, Year 2010
TitleLocalization of eukaryote-specific ribosomal proteins in a 5.5-Å cryo-EM map of the 80S eukaryotic ribosome.
AuthorsJean-Paul Armache, Alexander Jarasch, Andreas M Anger, Elizabeth Villa, Thomas Becker, Shashi Bhushan, Fabrice Jossinet, Michael Habeck, Gülcin Dindar, Sibylle Franckenberg, Viter Marquez, Thorsten Mielke, Michael Thomm, Otto Berninghausen, Birgitta Beatrix, Johannes Söding, Eric Westhof, Daniel N Wilson, Roland Beckmann
Gene Center, Department of Biochemistry, Ludwig-Maximilians-Universität München, Feodor-Lynen-Strasse 25, 81377 Munich, Germany.
KeywordsCryoelectron Microscopy, Eukaryotic Cells (metabolism), Evolution, Molecular, Models, Molecular, Protein Transport, RNA, Ribosomal (chemistry), Ribosomal Proteins (metabolism), Ribosomes (metabolism), Saccharomyces cerevisiae (metabolism), Species Specificity, Triticum (metabolism)
LinksDOI: 10.1073/pnas.1010005107, PubMed: 20974910, PMC: PMC2993421
Components
ID 1 : 60S ribosomal protein rpL1 (L1p)
Image
Description60S ribosomal protein rpL1 (L1p)
Typepolypeptide(L)
Formula weight24524.955 Da
Number of molecules1
ID1
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae

LinksUniProt: P53030, Sequence view
ID 2 : 60S ribosomal protein rpL2 (L2p)
Image
Description60S ribosomal protein rpL2 (L2p)
Typepolypeptide(L)
Formula weight27463.789 Da
Number of molecules1
ID2
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: P05736, Sequence view
ID 3 : 60S ribosomal protein rpL3 (L3p)
Image
Description60S ribosomal protein rpL3 (L3p)
Typepolypeptide(L)
Formula weight43908.301 Da
Number of molecules1
ID3
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: P14126, Sequence view
ID 4 : 60S ribosomal protein rpL4 (L4p)
Image
Description60S ribosomal protein rpL4 (L4p)
Typepolypeptide(L)
Formula weight39159.520 Da
Number of molecules1
ID4
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: P10664, Sequence view
ID 5 : 60S ribosomal protein rpL11 (L5p)
Image
Description60S ribosomal protein rpL11 (L5p)
Typepolypeptide(L)
Formula weight19755.850 Da
Number of molecules1
ID5
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: P0C0W9, Sequence view
ID 6 : 60S ribosomal protein rpL6 (L6e)
Image
Description60S ribosomal protein rpL6 (L6e)
Typepolypeptide(L)
Formula weight20000.750 Da
Number of molecules1
ID6
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: Q02326, Sequence view
ID 7 : 60S ribosomal protein rpL9 (L6p)
Image
Description60S ribosomal protein rpL9 (L6p)
Typepolypeptide(L)
Formula weight21605.229 Da
Number of molecules1
ID7
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: P05738, Sequence view
ID 8 : 60S ribosomal protein rpL8 (L7ae)
Image
Description60S ribosomal protein rpL8 (L7ae)
Typepolypeptide(L)
Formula weight28176.047 Da
Number of molecules1
ID8
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: P17076, Sequence view
ID 9 : 60S acidic ribosomal protein rpP0 (L10P)
Image
Description60S acidic ribosomal protein rpP0 (L10P)
Typepolypeptide(L)
Formula weight33749.387 Da
Number of molecules1
ID9
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: P05317, Sequence view
ID 10 : 60S ribosomal protein rpL12 (L11p)
Image
Description60S ribosomal protein rpL12 (L11p)
Typepolypeptide(L)
Formula weight17850.779 Da
Number of molecules1
ID10
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: P17079, Sequence view
ID 11 : 60S ribosomal protein rpL16 (L13p)
Image
Description60S ribosomal protein rpL16 (L13p)
Typepolypeptide(L)
Formula weight22247.422 Da
Number of molecules1
ID11
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: P26784, Sequence view
ID 12 : 60S ribosomal protein rpL14 (L14e)
Image
Description60S ribosomal protein rpL14 (L14e)
Typepolypeptide(L)
Formula weight15195.209 Da
Number of molecules1
ID12
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: D6VXT1, Sequence view
ID 13 : 60S ribosomal protein rpL23 (L14p)
Image
Description60S ribosomal protein rpL23 (L14p)
Typepolypeptide(L)
Formula weight14494.048 Da
Number of molecules1
ID13
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: P04451, Sequence view
ID 14 : 60S ribosomal protein rpL15 (L15e)
Image
Description60S ribosomal protein rpL15 (L15e)
Typepolypeptide(L)
Formula weight24482.586 Da
Number of molecules1
ID14
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: P05748, Sequence view
ID 15 : 60S ribosomal protein rpL28 (L15p)
Image
Description60S ribosomal protein rpL28 (L15p)
Typepolypeptide(L)
Formula weight16761.809 Da
Number of molecules1
ID15
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: P02406, Sequence view
ID 16 : 60S ribosomal protein rpL18 (L18e)
Image
Description60S ribosomal protein rpL18 (L18e)
Typepolypeptide(L)
Formula weight20609.439 Da
Number of molecules1
ID16
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: P07279, Sequence view
ID 17 : 60S ribosomal protein rpL19 (L19e)
Image
Description60S ribosomal protein rpL19 (L19e)
Typepolypeptide(L)
Formula weight21762.518 Da
Number of molecules1
ID17
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: P05735, Sequence view
ID 18 : 60S ribosomal protein rpL21 (L21e)
Image
Description60S ribosomal protein rpL21 (L21e)
Typepolypeptide(L)
Formula weight18279.408 Da
Number of molecules1
ID18
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: Q02753, Sequence view
ID 19 : 60S ribosomal protein rpL22 (L22e)
Image
Description60S ribosomal protein rpL22 (L22e)
Typepolypeptide(L)
Formula weight13711.495 Da
Number of molecules1
ID19
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: P05749, Sequence view
ID 20 : 60S ribosomal protein rpL17 (L22p)
Image
Description60S ribosomal protein rpL17 (L22p)
Typepolypeptide(L)
Formula weight19007.799 Da
Number of molecules1
ID20
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: P05740, Sequence view
ID 21 : 60S ribosomal protein rpL25 (L23p)
Image
Description60S ribosomal protein rpL25 (L23p)
Typepolypeptide(L)
Formula weight15787.753 Da
Number of molecules1
ID21
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: P04456, Sequence view
ID 22 : 60S ribosomal protein rpL24 (L24e)
Image
Description60S ribosomal protein rpL24 (L24e)
Typepolypeptide(L)
Formula weight17661.887 Da
Number of molecules1
ID22
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: P04449, Sequence view
ID 23 : 60S ribosomal protein rpL26 (L24p)
Image
Description60S ribosomal protein rpL26 (L24p)
Typepolypeptide(L)
Formula weight13837.408 Da
Number of molecules1
ID23
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: P05743, Sequence view
ID 24 : 60S ribosomal protein rpL27 (L27e)
Image
Description60S ribosomal protein rpL27 (L27e)
Typepolypeptide(L)
Formula weight15568.534 Da
Number of molecules1
ID24
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: P0C2H6, Sequence view
ID 25 : 60S ribosomal protein rpL29 (L29e)
Image
Description60S ribosomal protein rpL29 (L29e)
Typepolypeptide(L)
Formula weight6691.956 Da
Number of molecules1
ID25
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: P05747, Sequence view
ID 26 : 60S ribosomal protein rpL35 (L29p)
Image
Description60S ribosomal protein rpL35 (L29p)
Typepolypeptide(L)
Formula weight13942.775 Da
Number of molecules1
ID26
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: P39741, Sequence view
ID 27 : 60S ribosomal protein rpL30 (L30e)
Image
Description60S ribosomal protein rpL30 (L30e)
Typepolypeptide(L)
Formula weight11430.469 Da
Number of molecules1
ID27
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: P14120, Sequence view
ID 28 : 60S ribosomal protein rpL7 (L30p)
Image
Description60S ribosomal protein rpL7 (L30p)
Typepolypeptide(L)
Formula weight27686.523 Da
Number of molecules1
ID28
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: P05737, Sequence view
ID 29 : 60S ribosomal protein rpL31 (L31e)
Image
Description60S ribosomal protein rpL31 (L31e)
Typepolypeptide(L)
Formula weight12980.284 Da
Number of molecules1
ID29
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: P0C2H8, Sequence view
ID 30 : 60S ribosomal protein pL32 (L32e)
Image
Description60S ribosomal protein pL32 (L32e)
Typepolypeptide(L)
Formula weight14809.576 Da
Number of molecules1
ID30
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: P38061, Sequence view
ID 31 : 60S ribosomal protein rpL34 (L34e)
Image
Description60S ribosomal protein rpL34 (L34e)
Typepolypeptide(L)
Formula weight13343.865 Da
Number of molecules1
ID31
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: P87262, Sequence view
ID 32 : 60S ribosomal protein rpL33 (L35ae)
Image
Description60S ribosomal protein rpL33 (L35ae)
Typepolypeptide(L)
Formula weight12177.240 Da
Number of molecules1
ID32
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: P05744, Sequence view
ID 33 : 60S ribosomal protein rpL36 (L36e)
Image
Description60S ribosomal protein rpL36 (L36e)
Typepolypeptide(L)
Formula weight11151.353 Da
Number of molecules1
ID33
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: P05745, Sequence view
ID 34 : 60S ribosomal protein rpL43 (L37ae)
Image
Description60S ribosomal protein rpL43 (L37ae)
Typepolypeptide(L)
Formula weight10113.017 Da
Number of molecules1
ID34
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: P49631, Sequence view
ID 35 : 60S ribosomal protein rpL37 (L37e)
Image
Description60S ribosomal protein rpL37 (L37e)
Typepolypeptide(L)
Formula weight9877.457 Da
Number of molecules1
ID35
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: P49166, Sequence view
ID 36 : 60S ribosomal protein rpL38 (L38e)
Image
Description60S ribosomal protein rpL38 (L38e)
Typepolypeptide(L)
Formula weight8845.649 Da
Number of molecules1
ID36
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: P49167, Sequence view
ID 37 : 60S ribosomal protein rpL39 (L39e)
Image
Description60S ribosomal protein rpL39 (L39e)
Typepolypeptide(L)
Formula weight6358.690 Da
Number of molecules1
ID37
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: P04650, Sequence view
ID 38 : 60S ribosomal protein rpL40 (L40e)
Image
Description60S ribosomal protein rpL40 (L40e)
Typepolypeptide(L)
Formula weight6032.358 Da
Number of molecules1
ID38
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: P0CH08, Sequence view
ID 39 : 60S ribosomal protein rpL41 (L41e)
Image
Description60S ribosomal protein rpL41 (L41e)
Typepolypeptide(L)
Formula weight3354.272 Da
Number of molecules1
ID39
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: P05746, Sequence view
ID 40 : 60S ribosomal protein rpL42 (L44e)
Image
Description60S ribosomal protein rpL42 (L44e)
Typepolypeptide(L)
Formula weight12246.758 Da
Number of molecules1
ID40
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: P02405, Sequence view
ID 41 : Unknown protein
Image
DescriptionUnknown protein
Typepolypeptide(L)
Formula weight1805.229 Da
Number of molecules2
ID41
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksSequence view
ID 42 : Unknown protein
Image
DescriptionUnknown protein
Typepolypeptide(L)
Formula weight1294.596 Da
Number of molecules1
ID42
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksSequence view
ID 43 : 60S acidic ribosomal protein rpP11 (P1)
Image
Description60S acidic ribosomal protein rpP11 (P1)
Typepolypeptide(L)
Formula weight10928.913 Da
Number of molecules2
ID43
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: P05318, Sequence view
ID 44 : 60S acidic ribosomal protein (P2)
Image
Description60S acidic ribosomal protein (P2)
Typepolypeptide(L)
Formula weight10752.819 Da
Number of molecules2
ID44
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: P05319, Sequence view
ID 45 : 60S ribosomal protein rpL5 (L18p)
Image
Description60S ribosomal protein rpL5 (L18p)
Typepolypeptide(L)
Formula weight33793.121 Da
Number of molecules1
ID45
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: P26321, Sequence view
ID 46 : 60S ribosomal protein rpL13 (L13e)
Image
Description60S ribosomal protein rpL13 (L13e)
Typepolypeptide(L)
Formula weight14485.900 Da
Number of molecules1
ID46
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksSequence view
ID 47 : 60S ribosomal protein rpL20 (L18ae)
Image
Description60S ribosomal protein rpL20 (L18ae)
Typepolypeptide(L)
Formula weight20148.832 Da
Number of molecules1
ID47
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: Q0JJA0, Sequence view
ID 48 : 60S ribosomal protein rpL10 (L10e)
Image
Description60S ribosomal protein rpL10 (L10e)
Typepolypeptide(L)
Formula weight25410.660 Da
Number of molecules1
ID48
SourceMethod: Isolated from a natural source
Common name: yeast
NCBI taxonomy: ID:4932
Organism scientific: Saccharomyces cerevisiae
LinksUniProt: P41805, Sequence view
Sample
Assembly
Aggregation statePARTICLE
Experiment
Reconstruction methodSINGLE PARTICLE
Specimen typeVITREOUS ICE (CRYO EM)
Sample preparation
pH7.5
Experiment
MethodELECTRON MICROSCOPY
Electron Microscopy
Processing
Single particle entity
Symmetry typeASYMMETRIC
3D reconstruction
Resolution8.8 A
Refine hist
Cycle idLAST
Refine idELECTRON MICROSCOPY
Total atoms53637
Protein atoms53637
Download
PDB format
Allpdb3izs.ent.gz
pdb3izs.ent (uncompressed file)
Header onlypdb3izs.ent.gz
mmCIF format
mmCIF3izs.cif.gz
XML format
All3izs.xml.gz
No-atom3izs-noatom.xml.gz
Ext-atom3izs-extatom.xml.gz
Movie files
movie #1
.mp4 (H.264/MPEG-4 AVC format), 2.6 MB
.webm (WebM/VP8 format), 3.5 MB
movie #2
.mp4 (H.264/MPEG-4 AVC format), 3.3 MB
.webm (WebM/VP8 format), 4.3 MB
movie #3
.mp4 (H.264/MPEG-4 AVC format), 3.3 MB
.webm (WebM/VP8 format), 4.2 MB
movie #4
.mp4 (H.264/MPEG-4 AVC format), 2.9 MB
.webm (WebM/VP8 format), 3.8 MB
movie #5
.mp4 (H.264/MPEG-4 AVC format), 2.9 MB
.webm (WebM/VP8 format), 3.8 MB
movie #6
.mp4 (H.264/MPEG-4 AVC format), 3.7 MB
.webm (WebM/VP8 format), 5.4 MB