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Open data
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Basic information
Entry | ![]() | |||||||||
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Title | GK monomer complexes with catalytic intermediate | |||||||||
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![]() | L-proline biosynthesis / filamentous enzyme / ![]() | |||||||||
Function / homology | ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() Similarity search - Function | |||||||||
Biological species | ![]() ![]() ![]() | |||||||||
Method | ![]() ![]() | |||||||||
![]() | Zhang T / Guo CJ / Liu JL | |||||||||
Funding support | ![]()
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![]() | ![]() Title: GK monomer complexes with catalytic intermediate Authors: Zhang T / Guo CJ / Liu JL | |||||||||
History |
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Structure visualization
Supplemental images |
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Downloads & links
-EMDB archive
Map data | ![]() | 40.4 MB | ![]() | |
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Header (meta data) | ![]() ![]() | 13.9 KB 13.9 KB | Display Display | ![]() |
FSC (resolution estimation) | ![]() | 8.6 KB | Display | ![]() |
Images | ![]() | 67.5 KB | ||
Filedesc metadata | ![]() | 5.6 KB | ||
Others | ![]() ![]() | 40.7 MB 40.7 MB | ||
Archive directory | ![]() ![]() | HTTPS FTP |
-Related structure data
Related structure data | ![]() 8j0eMC M: atomic model generated by this map C: citing same article ( |
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Similar structure data | Similarity search - Function & homology ![]() |
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Links
EMDB pages | ![]() ![]() |
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Related items in Molecule of the Month |
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Map
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Voxel size | X=Y=Z: 1.06 Å | ||||||||||||||||||||
Density |
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Symmetry | Space group: 1 | ||||||||||||||||||||
Details | EMDB XML:
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-Supplemental data
-Half map: #1
File | emd_35900_half_map_1.map | ||||||||||||
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Projections & Slices |
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Density Histograms |
-Half map: #2
File | emd_35900_half_map_2.map | ||||||||||||
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Projections & Slices |
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Density Histograms |
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Sample components
-Entire : Arabidopsis thaliana P5CSB incubated with all substrates.
Entire | Name: Arabidopsis thaliana P5CSB incubated with all substrates. |
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Components |
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-Supramolecule #1: Arabidopsis thaliana P5CSB incubated with all substrates.
Supramolecule | Name: Arabidopsis thaliana P5CSB incubated with all substrates. type: complex / ID: 1 / Parent: 0 / Macromolecule list: #1 |
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Source (natural) | Organism: ![]() ![]() ![]() |
-Macromolecule #1: Delta-1-pyrroline-5-carboxylate synthase B
Macromolecule | Name: Delta-1-pyrroline-5-carboxylate synthase B / type: protein_or_peptide / ID: 1 / Number of copies: 4 / Enantiomer: LEVO / EC number: ![]() |
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Source (natural) | Organism: ![]() ![]() ![]() |
Molecular weight | Theoretical: 78.97732 KDa |
Recombinant expression | Organism: ![]() ![]() ![]() |
Sequence | String: MTEIDRSRAF AKDVKRIVVK VGTAVVTGKG GRLALGRLGA ICEQLAELNS DGFEVILVSS GAVGLGRQRL RYRQLVNSSF ADLQKPQME LDGKACAGVG QSSLMAYYET MFDQLDVTVA QMLVTDSSFR DKDFRKQLSE TVKAMLRMRV IPVFNENDAI S TRRAPYKD ...String: MTEIDRSRAF AKDVKRIVVK VGTAVVTGKG GRLALGRLGA ICEQLAELNS DGFEVILVSS GAVGLGRQRL RYRQLVNSSF ADLQKPQME LDGKACAGVG QSSLMAYYET MFDQLDVTVA QMLVTDSSFR DKDFRKQLSE TVKAMLRMRV IPVFNENDAI S TRRAPYKD STGIFWDNDS LAALLSLELK ADLLILLSDV EGLYTGPPSD STSKLIHTFI KEKHQDEITF GEKSKLGRGG MT AKVKAAV NAAYGGVPVI ITSGYAAENI SKVLRGLRVG TLFHQDAHLW APVVDTTSRD MAVAARESSR KLQALSSEDR KQI LHDIAN ALEVNEKTIK AENDLDVAAA QEAGYEESLV ARLVMKPGKI SSLAASVRQL AEMEDPIGRV LKKTQVADDL ILEK TSSPI GVLLIVFESR PDALVQIASL AIRSGNGLLL KGGKEARRSN AILHKVITDA IPETVGGKLI GLVTSREEIP DLLKL DDVI DLVIPRGSNK LVSQIKNSTK IPVLGHADGI CHVYVDKSGK LDMAKRIVSD AKLDYPAACN AMETLLVHKD LEQNGF LDD LIYVLQTKGV TLYGGPRASA KLNIPETKSF HHEYSSKACT VEIVEDVYGA IDHIHQHGSA HTDCIVTEDS EVAEIFL RQ VDSAAVFHNA STRFSDGFRF GLGAEVGIST SRIHARGPVG VEGLLTTRWI MRGKGQVVDG DNGIVYTHKD LPVLQRTE A VENGI UniProtKB: Delta-1-pyrroline-5-carboxylate synthase B |
-Macromolecule #2: (2~{R})-5-[[[[(2~{R},3~{S},4~{S},5~{R})-5-(6-aminopurin-9-yl)-3,4...
Macromolecule | Name: (2~{R})-5-[[[[(2~{R},3~{S},4~{S},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-2-azanyl-5-oxidanylidene-pentanoic acid type: ligand / ID: 2 / Number of copies: 1 / Formula: TKC |
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Molecular weight | Theoretical: 636.295 Da |
-Macromolecule #3: MAGNESIUM ION
Macromolecule | Name: MAGNESIUM ION / type: ligand / ID: 3 / Number of copies: 1 / Formula: MG |
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Molecular weight | Theoretical: 24.305 Da |
-Experimental details
-Structure determination
Method | ![]() |
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Aggregation state | filament |
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Sample preparation
Buffer | pH: 8 |
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Vitrification | Cryogen name: ETHANE |
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Electron microscopy
Microscope | FEI TITAN KRIOS |
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Electron beam | Acceleration voltage: 300 kV / Electron source: ![]() |
Electron optics | Illumination mode: FLOOD BEAM / Imaging mode: BRIGHT FIELD![]() |
Image recording | Film or detector model: GATAN K3 (6k x 4k) / Average electron dose: 60.0 e/Å2 |
Experimental equipment | ![]() Model: Titan Krios / Image courtesy: FEI Company |