PENTAMERIC MODEL OF THE BACTERIOPHAGE PHI29 PROHEAD RNA
by electron microscopy, at 20 A resolution

Entry | |
| Summary | |
| Database / ID | PORTEIN DATA BANK (PDB) / 1foq |
|---|---|
| Title | PENTAMERIC MODEL OF THE BACTERIOPHAGE PHI29 PROHEAD RNA |
| Descriptor | BACTERIOPHAGE PHI29 PROHEAD RNA |
| Keywords | RNA, dsRNA oligomeric model, Prohead RNA, Bacteriophage phi29 |
| Authors | Simpson, A.A., Tao, Y., Leiman, P.G., Badasso, M.O., He, Y., Jardine, P.J., Olson, N.H., Morais, M.C., Grimes, S., Anderson, D.L., Baker, T.S., Rossmann, M.G. |
| Date | Deposition: 2000-08-28, Release: 2000-12-22 |
| PDBj Mine pages | Summary, Structural Details, Experimental Details, Functional Details |
| Other databases | RCSB-PDB, PDBe, CATH, CE, FSSP, SCOP, VAST |
| Structure Visualization | |
| Movies | Movie Page#1: Depositted structure unit, Made by Jmol |
| Structure viewers | Yorodumi, jV4, Jmol, Biological unit (Images, jV) |
| Related Structure Data | |
| Related Entries |
Cite: data citing same article |
| Similar strucutres (beta) |
List of similar structure data about Omokage system |
Article | |
| Citation - primary | |
| Article | Nature, Vol. 408, Issue 6813, Page 745-50, Year 2000 |
|---|---|
| Title | Structure of the bacteriophage phi29 DNA packaging motor. |
| Authors | A A Simpson, Y Tao, P G Leiman, M O Badasso, Y He, P J Jardine, N H Olson, M C Morais, S Grimes, D L Anderson, T S Baker, M G Rossmann Department of Biological Sciences, Purdue University, West Lafayette, Indiana 47907-1392, USA. |
| Keywords | Adenosine Triphosphatases (chemistry, 3.6.1.-), Bacillus Phages (chemistry), Capsid (chemistry), Cryoelectron Microscopy, Crystallography, X-Ray, DNA, Viral (chemistry), Models, Molecular, Molecular Motor Proteins (chemistry), Nucleic Acid Conformation, RNA, Viral (chemistry) |
| Links | PubMed: 11130079, DOI: 10.1038/35047129 |
Components | |
| ID 1 : BACTERIOPHAGE PHI29 PROHEAD RNA | |
| Image | ![]() ![]() |
|---|---|
| Description | BACTERIOPHAGE PHI29 PROHEAD RNA |
| Type | polymer |
| Fragment | 1-120 BASE FRAGMENT |
| Mutation | BASES 5, 18-20, 106, 109 AND 118-120 ARE NOT IN THE MODEL |
| Formula weight | 38418.828 Da |
| Number of molecules | 5 |
| Source | Method: Isolated from a natural source Genus: Phi29-like viruses NCBI taxonomy: ID:10756Organism scientific: Bacillus phage phi29 |
| Links | GenBank: X05973, Sequence view |
Sample |
Electron Microscopy |
Processing | |
| Refine | |
| Ls d res high | 20.0 A |
|---|---|
| ID | 1 |
| Refine hist | |
| D res high | 20.0 |
| Total atoms | 11550 |
| Nucleic acid atoms | 11550 |
Download | |||
| PDB format | |||
| All | pdb1foq.ent.gz pdb1foq.ent (uncompressed file) | ||
|---|---|---|---|
| Header only | pdb1foq.ent.gz | ||
| mmCIF format | |||
| mmCIF | 1foq.cif.gz | ||
| XML format | |||
| All | 1foq.xml.gz | ||
| No-atom | 1foq-noatom.xml.gz | ||
| Ext-atom | 1foq-extatom.xml.gz | ||
| Movie files | |||
| movie #1 |
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